MGE detailed information
MGE type: Conjugative plasmid MGE length: 86167 bp
Accession: NZ_CP116096 Location: 1..86167 Organism: Escherichia coli strain DETEC-S560 Replicon: plasmid pDETEC69
Accession: NZ_CP116096 Location: 1..86167 Organism: Escherichia coli strain DETEC-S560 Replicon: plasmid pDETEC69
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC78_RS24585 (455) | 455..1486 | + | 1032 | WP_024176529.1 | plasmid replication initiator RepA | - |
| PIC78_RS24590 (2556) | 2556..3065 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| PIC78_RS24595 (3121) | 3121..3723 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| PIC78_RS24600 (4278) | 4278..5540 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PIC78_RS24605 (5796) | 5796..6671 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PIC78_RS24610 (6718) | 6718..7062 | - | 345 | Protein_5 | WbuC family cupin fold metalloprotein | - |
| PIC78_RS24615 (7005) | 7005..8399 | + | 1395 | WP_023150520.1 | protein YagA | - |
| PIC78_RS24620 (8898) | 8898..9200 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIC78_RS24625 (9197) | 9197..9823 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIC78_RS24630 (10011) | 10011..11282 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| PIC78_RS24635 (11282) | 11282..11719 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC78_RS24640 (11716) | 11716..11964 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIC78_RS24645 (12382) | 12382..13284 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| PIC78_RS24650 (13288) | 13288..13374 | + | 87 | Protein_13 | hypothetical protein | - |
| PIC78_RS24655 (13379) | 13379..13714 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| PIC78_RS24660 (14052) | 14052..15032 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| PIC78_RS24665 (15035) | 15035..15457 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| PIC78_RS24670 (15461) | 15461..15772 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| PIC78_RS24675 (15848) | 15848..16531 | + | 684 | WP_000086127.1 | DNA methylase | - |
| PIC78_RS24680 (16532) | 16532..16753 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| PIC78_RS24685 (16683) | 16683..17201 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| PIC78_RS24690 (17246) | 17246..18016 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| PIC78_RS24695 (18429) | 18429..18854 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| PIC78_RS24700 (18901) | 18901..19323 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| PIC78_RS24705 (19320) | 19320..19511 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| PIC78_RS24710 (19649) | 19649..19912 | + | 264 | WP_158213465.1 | hypothetical protein | - |
| PIC78_RS24715 (20296) | 20296..20823 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| PIC78_RS24720 (20881) | 20881..21114 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| PIC78_RS24725 (21173) | 21173..23131 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC78_RS24730 (23184) | 23184..23618 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| PIC78_RS24735 (23615) | 23615..24334 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| PIC78_RS24740 (24331) | 24331..24927 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| PIC78_RS24745 (25389) | 25389..25889 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| PIC78_RS24750 (26618) | 26618..27052 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| PIC78_RS24755 (27146) | 27146..27412 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| PIC78_RS24760 (27589) | 27589..27978 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIC78_RS24765 (27975) | 27975..28877 | + | 903 | WP_186205079.1 | ISNCY family transposase ISRor2 | VF |
| PIC78_RS24770 (28939) | 28939..29145 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| PIC78_RS24775 (29176) | 29176..29427 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| PIC78_RS24780 (30007) | 30007..30855 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| PIC78_RS24785 (30941) | 30941..31276 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| PIC78_RS24790 (31510) | 31510..31842 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PIC78_RS24795 (31853) | 31853..34552 | + | 2700 | WP_012783930.1 | hypothetical protein | Relaxase |
| PIC78_RS24800 (34589) | 34589..36880 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| PIC78_RS24805 (36873) | 36873..37943 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| PIC78_RS24810 (37962) | 37962..39170 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (39350) | 39350..39407 | - | 58 | NuclAT_1 | - | - |
| - (39350) | 39350..39407 | - | 58 | NuclAT_1 | - | - |
| - (39350) | 39350..39407 | - | 58 | NuclAT_1 | - | - |
| - (39350) | 39350..39407 | - | 58 | NuclAT_1 | - | - |
| PIC78_RS24815 (39477) | 39477..40562 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (40771) | 40771..40831 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40771) | 40771..40831 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40771) | 40771..40831 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40771) | 40771..40831 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| PIC78_RS24820 (40883) | 40883..41035 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| PIC78_RS24825 (41107) | 41107..41358 | - | 252 | WP_271287794.1 | hypothetical protein | - |
| PIC78_RS24830 (41859) | 41859..41954 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PIC78_RS24835 (42019) | 42019..42195 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| PIC78_RS24840 (42587) | 42587..42796 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| PIC78_RS24845 (42868) | 42868..43530 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC78_RS24850 (43601) | 43601..45769 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| PIC78_RS24855 (45866) | 45866..46450 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| PIC78_RS24860 (46479) | 46479..47681 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| PIC78_RS24865 (47648) | 47648..48262 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| PIC78_RS24870 (48262) | 48262..51306 | - | 3045 | WP_271287792.1 | IncI1-type conjugal transfer protein TraU | - |
| PIC78_RS24875 (51396) | 51396..52196 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| PIC78_RS24880 (52180) | 52180..52368 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| PIC78_RS24885 (52432) | 52432..52836 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| PIC78_RS24890 (52887) | 52887..53414 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PIC78_RS24895 (53414) | 53414..54118 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| PIC78_RS24900 (54118) | 54118..55407 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| PIC78_RS24905 (55410) | 55410..56393 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| PIC78_RS24910 (56404) | 56404..57096 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PIC78_RS24915 (57093) | 57093..57440 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PIC78_RS24920 (57458) | 57458..61225 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| PIC78_RS24925 (61315) | 61315..61866 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| PIC78_RS24930 (61881) | 61881..62171 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| PIC78_RS24935 (62168) | 62168..63316 | - | 1149 | WP_271287793.1 | putative protein YggR | VF |
| PIC78_RS24940 (63313) | 63313..64131 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| PIC78_RS24945 (64128) | 64128..64586 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PIC78_RS24950 (64980) | 64980..65564 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PIC78_RS24955 (65624) | 65624..66826 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PIC78_RS24960 (66912) | 66912..67736 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| PIC78_RS24965 (67887) | 67887..69041 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| PIC78_RS24970 (69040) | 69040..69393 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| PIC78_RS24975 (70174) | 70174..71598 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| PIC78_RS24980 (71598) | 71598..72254 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PIC78_RS24985 (72239) | 72239..72799 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PIC78_RS24990 (72809) | 72809..73423 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| PIC78_RS24995 (73441) | 73441..74538 | - | 1098 | WP_001492931.1 | hypothetical protein | VF |
| PIC78_RS25000 (74551) | 74551..76104 | - | 1554 | WP_001492932.1 | hypothetical protein | VF |
| PIC78_RS25005 (76115) | 76115..76567 | - | 453 | WP_012783945.1 | hypothetical protein | VF |
| PIC78_RS25010 (76554) | 76554..77849 | - | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| PIC78_RS25015 (77842) | 77842..79524 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PIC78_RS25020 (79538) | 79538..79975 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PIC78_RS25025 (79975) | 79975..81042 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| PIC78_RS25030 (81666) | 81666..81962 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| PIC78_RS25035 (82129) | 82129..82383 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| PIC78_RS25040 (82545) | 82545..83096 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| PIC78_RS25045 (83269) | 83269..83952 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| PIC78_RS25050 (84206) | 84206..84739 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| PIC78_RS25055 (85181) | 85181..85468 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| PIC78_RS25060 (85506) | 85506..85664 | - | 159 | Protein_95 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|