MGE detailed information
MGE type: Conjugative plasmid MGE length: 90981 bp
Accession: NZ_CP116090 Location: 1..90981 Organism: Escherichia coli strain DETEC-S565 Replicon: plasmid pDETEC73
Accession: NZ_CP116090 Location: 1..90981 Organism: Escherichia coli strain DETEC-S565 Replicon: plasmid pDETEC73
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC22_RS24410 (455) | 455..1486 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| PIC22_RS24415 (2182) | 2182..2322 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| PIC22_RS24420 (2555) | 2555..2974 | - | 420 | Protein_2 | hypothetical protein | - |
| PIC22_RS24425 (3146) | 3146..4345 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| PIC22_RS24430 (4355) | 4355..4543 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| PIC22_RS24435 (4558) | 4558..4752 | - | 195 | WP_271291623.1 | hypothetical protein | - |
| PIC22_RS24440 (4808) | 4808..5410 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| PIC22_RS24445 (5965) | 5965..7227 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PIC22_RS24450 (7483) | 7483..8358 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PIC22_RS24455 (8405) | 8405..8749 | - | 345 | Protein_9 | WbuC family cupin fold metalloprotein | - |
| PIC22_RS24460 (8692) | 8692..10086 | + | 1395 | WP_023150520.1 | protein YagA | - |
| PIC22_RS24465 (10593) | 10593..10895 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIC22_RS24470 (10892) | 10892..11518 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIC22_RS24475 (11706) | 11706..12966 | - | 1261 | Protein_13 | Y-family DNA polymerase | - |
| PIC22_RS24480 (12966) | 12966..13403 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC22_RS24485 (13400) | 13400..13648 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIC22_RS24490 (14066) | 14066..14968 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| PIC22_RS24495 (14972) | 14972..15058 | + | 87 | Protein_17 | hypothetical protein | - |
| PIC22_RS24500 (15063) | 15063..15398 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| PIC22_RS24505 (15736) | 15736..16716 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| PIC22_RS24510 (16719) | 16719..17141 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| PIC22_RS24515 (17145) | 17145..17456 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| PIC22_RS24520 (17532) | 17532..18215 | + | 684 | WP_000086127.1 | DNA methylase | - |
| PIC22_RS24525 (18216) | 18216..18437 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| PIC22_RS24530 (18367) | 18367..18885 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| PIC22_RS24535 (18930) | 18930..19700 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| PIC22_RS24540 (20113) | 20113..20538 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| PIC22_RS24545 (20585) | 20585..21007 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| PIC22_RS24550 (21004) | 21004..21195 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| PIC22_RS24555 (21333) | 21333..21596 | + | 264 | WP_158213465.1 | hypothetical protein | - |
| PIC22_RS24560 (21980) | 21980..22507 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| PIC22_RS24565 (22565) | 22565..22798 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| PIC22_RS24570 (22857) | 22857..24815 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC22_RS24575 (24868) | 24868..25302 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| PIC22_RS24580 (25299) | 25299..26018 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| PIC22_RS24585 (26015) | 26015..26611 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| PIC22_RS24590 (27073) | 27073..27573 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| PIC22_RS24595 (28302) | 28302..28442 | + | 141 | Protein_37 | post-segregation killing protein PndC | - |
| PIC22_RS24600 (28635) | 28635..30176 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| PIC22_RS24605 (30191) | 30191..30937 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| PIC22_RS24610 (31023) | 31023..31322 | + | 300 | Protein_40 | post-segregation killing protein PndC | - |
| PIC22_RS24615 (31416) | 31416..31682 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| PIC22_RS24620 (31859) | 31859..32248 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIC22_RS24625 (32245) | 32245..33147 | + | 903 | WP_023150544.1 | ISNCY family transposase ISRor2 | VF |
| PIC22_RS24630 (33209) | 33209..33415 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| PIC22_RS24635 (33446) | 33446..33697 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| PIC22_RS24640 (34277) | 34277..35125 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| PIC22_RS24645 (35211) | 35211..35546 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| PIC22_RS24650 (35780) | 35780..36112 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PIC22_RS24655 (36123) | 36123..38822 | + | 2700 | WP_012783930.1 | hypothetical protein | Relaxase |
| PIC22_RS24660 (38859) | 38859..41150 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| PIC22_RS24665 (41143) | 41143..42213 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| PIC22_RS24670 (42232) | 42232..43440 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (43620) | 43620..43677 | - | 58 | NuclAT_1 | - | - |
| - (43620) | 43620..43677 | - | 58 | NuclAT_1 | - | - |
| - (43620) | 43620..43677 | - | 58 | NuclAT_1 | - | - |
| - (43620) | 43620..43677 | - | 58 | NuclAT_1 | - | - |
| PIC22_RS24675 (43747) | 43747..44832 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (45041) | 45041..45101 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (45041) | 45041..45101 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (45041) | 45041..45101 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (45041) | 45041..45101 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| PIC22_RS24680 (45153) | 45153..45305 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| PIC22_RS24685 (45377) | 45377..45628 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| PIC22_RS24690 (46129) | 46129..46224 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PIC22_RS24695 (46289) | 46289..46465 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| PIC22_RS24700 (46857) | 46857..47066 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| PIC22_RS24705 (47138) | 47138..47800 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC22_RS24710 (47871) | 47871..50039 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| PIC22_RS24715 (50136) | 50136..50720 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| PIC22_RS24720 (50749) | 50749..51951 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| PIC22_RS24725 (51918) | 51918..52532 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| PIC22_RS24730 (52532) | 52532..55576 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| PIC22_RS24735 (55666) | 55666..56466 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| PIC22_RS24740 (56450) | 56450..56638 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| PIC22_RS24745 (56702) | 56702..57106 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| PIC22_RS24750 (57157) | 57157..57684 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PIC22_RS24755 (57684) | 57684..58388 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| PIC22_RS24760 (58388) | 58388..59677 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| PIC22_RS24765 (59680) | 59680..60663 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| PIC22_RS24770 (60674) | 60674..61366 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PIC22_RS24775 (61363) | 61363..61710 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PIC22_RS24780 (61728) | 61728..65495 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| PIC22_RS24785 (65585) | 65585..66136 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| PIC22_RS24790 (66151) | 66151..66441 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| PIC22_RS24795 (66438) | 66438..67586 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| PIC22_RS24800 (67583) | 67583..68401 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| PIC22_RS24805 (68398) | 68398..68856 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PIC22_RS24810 (69250) | 69250..69834 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PIC22_RS24815 (69894) | 69894..71096 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PIC22_RS24820 (71181) | 71181..72005 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| PIC22_RS24825 (72156) | 72156..73310 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| PIC22_RS24830 (74831) | 74831..75079 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| PIC22_RS24835 (75076) | 75076..76368 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| PIC22_RS24840 (76368) | 76368..77024 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PIC22_RS24845 (77009) | 77009..77569 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PIC22_RS24850 (77579) | 77579..78193 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| PIC22_RS24855 (78211) | 78211..79308 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| PIC22_RS24860 (79321) | 79321..80874 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| PIC22_RS24865 (80885) | 80885..81337 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| PIC22_RS24870 (81324) | 81324..82619 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| PIC22_RS24875 (82612) | 82612..84294 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PIC22_RS24880 (84308) | 84308..84745 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PIC22_RS24885 (84745) | 84745..85812 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| PIC22_RS24890 (86486) | 86486..86938 | - | 453 | WP_001535696.1 | hypothetical protein | - |
| PIC22_RS24895 (86981) | 86981..87235 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| PIC22_RS24900 (87503) | 87503..88069 | - | 567 | WP_000776428.1 | protein TraD | - |
| PIC22_RS24905 (88083) | 88083..88766 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| PIC22_RS24910 (89020) | 89020..89553 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| PIC22_RS24915 (89995) | 89995..90282 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| PIC22_RS24920 (90200) | 90200..90430 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|