MGE detailed information
MGE type: Conjugative plasmid MGE length: 89022 bp
Accession: NZ_CP116073 Location: 1..89022 Organism: Escherichia coli strain DETEC-S589 Replicon: plasmid pDETEC78
Accession: NZ_CP116073 Location: 1..89022 Organism: Escherichia coli strain DETEC-S589 Replicon: plasmid pDETEC78
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC30_RS26550 (PIC30_26550) | 495..1367 | + | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| PIC30_RS26555 (PIC30_26555) | 2062..2220 | + | 159 | WP_271287429.1 | hypothetical protein | - |
| PIC30_RS26560 (PIC30_26560) | 2275..2544 | + | 270 | WP_032291093.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| PIC30_RS26565 (PIC30_26565) | 2544..2822 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PIC30_RS26570 (PIC30_26570) | 2862..3710 | + | 849 | WP_032291092.1 | 3'-5' exonuclease | - |
| PIC30_RS26575 (PIC30_26575) | 4026..4535 | - | 510 | WP_032291091.1 | hypothetical protein | - |
| PIC30_RS26580 (PIC30_26580) | 4591..5193 | - | 603 | WP_032291854.1 | ProQ/FINO family protein | - |
| PIC30_RS26585 (PIC30_26585) | 5546..6892 | + | 1347 | WP_001132021.1 | protein YagA | - |
| PIC30_RS26590 (PIC30_26590) | 7427..7729 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIC30_RS26595 (PIC30_26595) | 7726..8352 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIC30_RS26600 (PIC30_26600) | 8564..9824 | - | 1261 | Protein_10 | Y-family DNA polymerase | - |
| PIC30_RS26605 (PIC30_26605) | 9824..10261 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC30_RS26610 (PIC30_26610) | 10258..10506 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIC30_RS26615 (PIC30_26615) | 10924..11826 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| PIC30_RS26620 (PIC30_26620) | 11830..11916 | + | 87 | Protein_14 | hypothetical protein | - |
| PIC30_RS26625 (PIC30_26625) | 11921..12256 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| PIC30_RS26630 (PIC30_26630) | 12594..13574 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| PIC30_RS26635 (PIC30_26635) | 13577..13999 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| PIC30_RS26640 (PIC30_26640) | 14003..14314 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| PIC30_RS26645 (PIC30_26645) | 14390..15073 | + | 684 | WP_000086127.1 | DNA methylase | - |
| PIC30_RS26650 (PIC30_26650) | 15074..15295 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| PIC30_RS26655 (PIC30_26655) | 15225..15743 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| PIC30_RS26660 (PIC30_26660) | 15788..16558 | + | 771 | WP_089438460.1 | hypothetical protein | - |
| PIC30_RS26665 (PIC30_26665) | 16974..17399 | + | 426 | WP_001198900.1 | antirestriction protein | - |
| PIC30_RS26670 (PIC30_26670) | 17446..17868 | + | 423 | WP_000271688.1 | DUF1380 family protein | - |
| PIC30_RS26675 (PIC30_26675) | 17865..18056 | + | 192 | WP_001493747.1 | hypothetical protein | - |
| PIC30_RS26680 (PIC30_26680) | 18070..18441 | + | 372 | WP_072105516.1 | hypothetical protein | - |
| PIC30_RS26685 (PIC30_26685) | 18825..19352 | + | 528 | WP_021532391.1 | single-stranded DNA-binding protein | - |
| PIC30_RS26690 (PIC30_26690) | 19410..19643 | + | 234 | WP_096842724.1 | DUF905 domain-containing protein | - |
| PIC30_RS26695 (PIC30_26695) | 19702..21660 | + | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC30_RS26700 (PIC30_26700) | 21715..22149 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| PIC30_RS26705 (PIC30_26705) | 22146..22865 | + | 720 | WP_063118035.1 | plasmid SOS inhibition protein A | - |
| PIC30_RS26710 (PIC30_26710) | 22862..23458 | + | 597 | WP_000977998.1 | hypothetical protein | - |
| PIC30_RS26715 (PIC30_26715) | 23920..24420 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| PIC30_RS26720 (PIC30_26720) | 24560..24913 | - | 354 | WP_072105519.1 | hypothetical protein | - |
| PIC30_RS26725 (PIC30_26725) | 25153..25587 | + | 435 | WP_000218857.1 | hypothetical protein | - |
| PIC30_RS26730 (PIC30_26730) | 25680..25946 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| PIC30_RS26735 (PIC30_26735) | 26123..26512 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIC30_RS26740 (PIC30_26740) | 26509..27399 | + | 891 | WP_000038343.1 | Recombination-promoting nuclease RpnA | VF |
| PIC30_RS26745 (PIC30_26745) | 27399..27644 | + | 246 | WP_001260882.1 | hypothetical protein | - |
| PIC30_RS26750 (PIC30_26750) | 27675..27926 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| PIC30_RS26755 (PIC30_26755) | 28506..29354 | + | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| PIC30_RS26760 (PIC30_26760) | 29440..29775 | - | 336 | WP_000157090.1 | hypothetical protein | - |
| PIC30_RS26765 (PIC30_26765) | 30008..30340 | + | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| PIC30_RS26770 (PIC30_26770) | 30352..33072 | + | 2721 | WP_000991405.1 | Protein TraI | Relaxase |
| PIC30_RS26775 (PIC30_26775) | 33293..35593 | - | 2301 | WP_013307869.1 | F-type conjugative transfer protein TrbC | - |
| PIC30_RS26780 (PIC30_26780) | 35574..36698 | - | 1125 | WP_000152382.1 | DsbC family protein | - |
| PIC30_RS26785 (PIC30_26785) | 36695..37993 | - | 1299 | WP_001402878.1 | IncI1-type conjugal transfer protein TrbA | - |
| PIC30_RS26790 | 38790..38885 | + | 96 | WP_001363141.1 | DinQ-like type I toxin DqlB | - |
| PIC30_RS26795 (PIC30_26795) | 38948..39124 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| PIC30_RS26800 (PIC30_26800) | 39274..39741 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| PIC30_RS26805 (PIC30_26805) | 39900..40523 | + | 624 | WP_001155247.1 | helix-turn-helix domain-containing protein | - |
| PIC30_RS26810 (PIC30_26810) | 40721..40936 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| PIC30_RS26815 (PIC30_26815) | 40940..41308 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| PIC30_RS26820 (PIC30_26820) | 41599..41841 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| PIC30_RS26825 (PIC30_26825) | 42171..42323 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| PIC30_RS26830 (PIC30_26830) | 42461..44047 | - | 1587 | WP_000004564.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| PIC30_RS26835 (PIC30_26835) | 44321..44974 | - | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC30_RS26840 (PIC30_26840) | 45062..47227 | - | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| PIC30_RS26845 (PIC30_26845) | 47302..47871 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| PIC30_RS26850 (PIC30_26850) | 47868..49073 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| PIC30_RS26855 (PIC30_26855) | 49031..49651 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| PIC30_RS26860 (PIC30_26860) | 49651..52695 | - | 3045 | WP_013307872.1 | conjugal transfer nucleotide-binding protein | - |
| PIC30_RS26865 (PIC30_26865) | 52990..53808 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| PIC30_RS26870 (PIC30_26870) | 53723..53974 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| PIC30_RS26875 (PIC30_26875) | 54031..54429 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| PIC30_RS26880 (PIC30_26880) | 54476..55006 | - | 531 | WP_000987023.1 | conjugal transfer protein TraQ | - |
| PIC30_RS26885 (PIC30_26885) | 55003..55716 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| PIC30_RS26890 (PIC30_26890) | 55713..57050 | - | 1338 | WP_013307873.1 | conjugal transfer protein TraO | - |
| PIC30_RS26895 (PIC30_26895) | 57054..58028 | - | 975 | WP_000547383.1 | hypothetical protein | VF |
| PIC30_RS26900 (PIC30_26900) | 58039..58734 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| PIC30_RS26905 (PIC30_26905) | 58746..59096 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| PIC30_RS26910 (PIC30_26910) | 59113..63174 | - | 4062 | WP_013307874.1 | DUF5710 domain-containing protein | - |
| PIC30_RS26915 (PIC30_26915) | 63528..64109 | - | 582 | WP_025750394.1 | hypothetical protein | - |
| PIC30_RS26920 (PIC30_26920) | 64117..64572 | - | 456 | Protein_74 | IS5 family transposase | - |
| PIC30_RS26925 (PIC30_26925) | 64607..65482 | - | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| PIC30_RS26930 (PIC30_26930) | 65732..66994 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PIC30_RS26935 (PIC30_26935) | 67406..67696 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| PIC30_RS26940 (PIC30_26940) | 67693..68841 | - | 1149 | WP_013307876.1 | putative protein YggR | VF |
| PIC30_RS26945 (PIC30_26945) | 68825..69661 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| PIC30_RS26950 (PIC30_26950) | 69658..70116 | - | 459 | WP_025750398.1 | DotD/TraH family lipoprotein | - |
| PIC30_RS26955 (PIC30_26955) | 70220..71422 | - | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| PIC30_RS26960 (PIC30_26960) | 71524..72345 | - | 822 | WP_001681675.1 | hypothetical protein | - |
| PIC30_RS26965 (PIC30_26965) | 72558..73682 | - | 1125 | WP_013307880.1 | site-specific integrase | - |
| PIC30_RS26970 (PIC30_26970) | 74006..74161 | - | 156 | WP_001358489.1 | hypothetical protein | - |
| PIC30_RS26975 (PIC30_26975) | 74170..74541 | + | 372 | WP_194813329.1 | pilus assembly protein | - |
| PIC30_RS26980 (PIC30_26980) | 74863..75213 | + | 351 | WP_224671099.1 | phage tail protein | - |
| PIC30_RS26985 (PIC30_26985) | 75218..76540 | - | 1323 | WP_052993642.1 | hypothetical protein | VF |
| PIC30_RS26990 (PIC30_26990) | 76558..77184 | - | 627 | WP_013307883.1 | prepilin peptidase | - |
| PIC30_RS26995 (PIC30_26995) | 77200..77685 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| PIC30_RS27000 (PIC30_27000) | 77730..78266 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| PIC30_RS27005 (PIC30_27005) | 78328..79422 | - | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| PIC30_RS27010 (PIC30_27010) | 79424..80932 | - | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| PIC30_RS27015 (PIC30_27015) | 81035..81493 | - | 459 | WP_000095887.1 | hypothetical protein | VF |
| PIC30_RS27020 (PIC30_27020) | 81483..82778 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| PIC30_RS27025 (PIC30_27025) | 82799..84418 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| PIC30_RS27030 (PIC30_27030) | 84450..84887 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| PIC30_RS27035 (PIC30_27035) | 84891..85961 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| PIC30_RS27040 (PIC30_27040) | 86202..86522 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| PIC30_RS27045 (PIC30_27045) | 86638..86880 | - | 243 | WP_021515452.1 | PilI type IV pilus biogenesis protein | - |
| PIC30_RS27050 (PIC30_27050) | 86961..87104 | - | 144 | WP_000176500.1 | hypothetical protein | - |
| PIC30_RS27055 (PIC30_27055) | 87371..88033 | - | 663 | WP_005082527.1 | hypothetical protein | - |
| PIC30_RS27060 (PIC30_27060) | 88173..88679 | - | 507 | WP_005082529.1 | transcription termination/antitermination NusG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|