MGE detailed information
MGE type: Genomic_island MGE length: 20355 bp
Accession: NZ_CP116071 Location: 3987046..4007400 Organism: Escherichia coli strain DETEC-S589 Replicon: chromosome
Accession: NZ_CP116071 Location: 3987046..4007400 Organism: Escherichia coli strain DETEC-S589 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC30_RS19910 (3982411) | 3982411..3982869 | - | 459 | WP_001291988.1 | xanthine phosphoribosyltransferase | - |
| PIC30_RS19915 (3983130) | 3983130..3984587 | + | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| PIC30_RS19920 (3984644) | 3984644..3985258 | - | 615 | WP_000602123.1 | peptide chain release factor H | - |
| PIC30_RS19925 (3985255) | 3985255..3986394 | - | 1140 | WP_000521577.1 | RNA ligase RtcB family protein | - |
| PIC30_RS19930 (3986584) | 3986584..3987036 | - | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| PIC30_RS19935 (3987046) | 3987046..3987444 | - | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| PIC30_RS19940 (3987447) | 3987447..3987740 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| PIC30_RS19945 (3987792) | 3987792..3988847 | - | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| PIC30_RS19950 (3988918) | 3988918..3989703 | - | 786 | WP_000207544.1 | hypothetical protein | VF |
| PIC30_RS19955 (3989675) | 3989675..3991387 | + | 1713 | Protein_3911 | Flagellar biosynthesis protein FlhA | VF |
| PIC30_RS19960 (3991466) | 3991466..3991624 | + | 159 | WP_014639450.1 | hypothetical protein | - |
| PIC30_RS19965 (3991707) | 3991707..3992204 | - | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| PIC30_RS19970 (3992380) | 3992380..3993129 | - | 750 | WP_000093934.1 | hypothetical protein | VF |
| PIC30_RS19975 (3993441) | 3993441..3994181 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| PIC30_RS19980 (3994152) | 3994152..3994919 | - | 768 | WP_001331866.1 | class II glutamine amidotransferase | - |
| PIC30_RS19985 (3995124) | 3995124..3995702 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| PIC30_RS19990 (3995942) | 3995942..3998386 | + | 2445 | WP_000973137.1 | Acyl-coenzyme A dehydrogenase | VF |
| PIC30_RS19995 (3998429) | 3998429..3998875 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| PIC30_RS20000 (3999056) | 3999056..3999826 | + | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| PIC30_RS20005 (3999877) | 3999877..4000071 | - | 195 | Protein_3921 | ISAs1 family transposase | - |
| PIC30_RS20010 (4000097) | 4000097..4000585 | - | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| PIC30_RS20015 (4000679) | 4000679..4001182 | - | 504 | WP_000227712.1 | hypothetical protein | - |
| PIC30_RS20020 (4001411) | 4001411..4002175 | - | 765 | Protein_3924 | ISAs1 family transposase ISEc1 | Transposase |
| PIC30_RS20025 (4002433) | 4002433..4002723 | - | 291 | WP_000513317.1 | hypothetical protein | - |
| PIC30_RS20030 (4002698) | 4002698..4004137 | - | 1440 | WP_214209378.1 | DUF4150 domain-containing protein | - |
| PIC30_RS20035 (4004220) | 4004220..4005176 | - | 957 | WP_225090612.1 | DUF2169 domain-containing protein | - |
| PIC30_RS20040 (4005283) | 4005283..4007265 | - | 1983 | WP_000053636.1 | Actin cross-linking toxin VgrG1 | VF |
| PIC30_RS20045 (4007486) | 4007486..4008004 | - | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| PIC30_RS20050 (4008714) | 4008714..4009217 | + | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| PIC30_RS20055 (4009240) | 4009240..4010724 | + | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| PIC30_RS20060 (4010729) | 4010729..4011154 | + | 426 | WP_000946068.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|