MGE detailed information
MGE type: Prophage MGE length: 90941 bp
Accession: NZ_CP116071 Location: 2169375..2260315 Organism: Escherichia coli strain DETEC-S589 Replicon: chromosome
Accession: NZ_CP116071 Location: 2169375..2260315 Organism: Escherichia coli strain DETEC-S589 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC30_RS10405 () | 2166423..2167394 | - | 972 | WP_000564725.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| PIC30_RS10410 () | 2167391..2168134 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| PIC30_RS10415 () | 2168175..2168570 | - | 396 | WP_001313931.1 | MAPEG family protein | - |
| PIC30_RS10420 () | 2168623..2169393 | - | 771 | WP_050516397.1 | DUF72 domain-containing protein | - |
| PIC30_RS10425 () | 2169375..2170688 | - | 1314 | WP_001553036.1 | Putative defective protein IntQ ; Integrase | Integrase |
| PIC30_RS10430 () | 2170744..2170980 | - | 237 | WP_000528718.1 | excisionase family protein | - |
| PIC30_RS10435 () | 2170989..2171135 | - | 147 | WP_001553034.1 | hypothetical protein | - |
| PIC30_RS10440 () | 2171139..2171381 | - | 243 | WP_000457737.1 | DUF4222 domain-containing protein | - |
| PIC30_RS10445 () | 2171466..2171843 | - | 378 | WP_001553033.1 | DUF551 domain-containing protein | - |
| PIC30_RS10450 () | 2171840..2172073 | - | 234 | WP_001405832.1 | hypothetical protein | - |
| PIC30_RS10455 () | 2172070..2172435 | - | 366 | WP_000014163.1 | ead/Ea22-like family protein | - |
| PIC30_RS10460 () | 2172422..2172655 | - | 234 | WP_000687969.1 | hypothetical protein | - |
| PIC30_RS10465 () | 2172652..2173221 | - | 570 | WP_001553032.1 | hypothetical protein | - |
| PIC30_RS10470 () | 2173218..2173967 | - | 750 | WP_001553031.1 | ORF6N domain-containing protein | - |
| PIC30_RS10475 () | 2174011..2174838 | - | 828 | WP_001553029.1 | SPFH domain-containing protein | - |
| PIC30_RS10480 () | 2175084..2175476 | - | 393 | WP_000566776.1 | hypothetical protein | - |
| PIC30_RS10485 () | 2175473..2175691 | - | 219 | WP_001336513.1 | hypothetical protein | - |
| PIC30_RS10490 () | 2175663..2175878 | - | 216 | WP_000002323.1 | hypothetical protein | - |
| PIC30_RS10495 () | 2175878..2176237 | - | 360 | WP_000148631.1 | hypothetical protein | - |
| PIC30_RS10500 () | 2176422..2176613 | - | 192 | WP_000632554.1 | hypothetical protein | - |
| PIC30_RS10505 () | 2176610..2176801 | - | 192 | WP_000781553.1 | hypothetical protein | - |
| PIC30_RS10510 () | 2176803..2177219 | - | 417 | WP_001617650.1 | helix-turn-helix transcriptional regulator | - |
| PIC30_RS10515 () | 2177316..2177972 | - | 657 | WP_000838346.1 | S24 family peptidase | - |
| PIC30_RS10520 () | 2178084..2178335 | + | 252 | WP_097494640.1 | hypothetical protein | - |
| PIC30_RS10525 () | 2178298..2178591 | + | 294 | WP_001553022.1 | hypothetical protein | - |
| PIC30_RS10530 () | 2178840..2179214 | + | 375 | WP_001553021.1 | hypothetical protein | - |
| PIC30_RS10535 () | 2179326..2180984 | + | 1659 | WP_001553020.1 | DEAD/DEAH box helicase | - |
| PIC30_RS10540 () | 2180986..2181954 | + | 969 | WP_000844628.1 | toprim domain-containing protein | - |
| PIC30_RS10545 () | 2181954..2182811 | + | 858 | WP_001553018.1 | hypothetical protein | - |
| PIC30_RS10550 () | 2182811..2183158 | + | 348 | WP_001553017.1 | antiterminator Q family protein | - |
| PIC30_RS10555 () | 2183389..2184117 | + | 729 | WP_001553016.1 | Pertussis toxin subunit 1 | VF |
| PIC30_RS10560 () | 2184250..2184675 | + | 426 | WP_001553015.1 | subtilase family AB5 toxin binding subunit | - |
| PIC30_RS10565 () | 2184734..2185126 | + | 393 | WP_001553014.1 | putative holin | - |
| PIC30_RS10570 () | 2185116..2185391 | + | 276 | WP_001553013.1 | phage holin family protein | - |
| PIC30_RS10575 () | 2185394..2185771 | + | 378 | WP_001553012.1 | M15 family metallopeptidase | - |
| PIC30_RS10580 () | 2186007..2186192 | + | 186 | WP_071702523.1 | Rz1 family lipoprotein | - |
| PIC30_RS10585 () | 2186278..2186502 | + | 225 | WP_000736383.1 | hypothetical protein | - |
| PIC30_RS10590 () | 2186859..2186999 | + | 141 | WP_000347013.1 | hypothetical protein | - |
| PIC30_RS10595 () | 2187132..2187317 | - | 186 | WP_001329960.1 | YlcI/YnfO family protein | - |
| PIC30_RS10600 () | 2187712..2188257 | + | 546 | WP_000867508.1 | terminase small subunit | - |
| PIC30_RS10605 () | 2188232..2190157 | + | 1926 | WP_021573260.1 | phage terminase large subunit family protein | - |
| PIC30_RS10610 () | 2190154..2190360 | + | 207 | WP_000198148.1 | gpW family protein | - |
| PIC30_RS10615 () | 2190357..2191958 | + | 1602 | WP_053002676.1 | phage portal protein | - |
| PIC30_RS10620 () | 2191939..2193258 | + | 1320 | WP_001552790.1 | S49 family peptidase | - |
| PIC30_RS10625 () | 2193268..2193600 | + | 333 | WP_001552791.1 | head decoration protein | - |
| PIC30_RS10630 () | 2193655..2194680 | + | 1026 | WP_001552792.1 | major capsid protein | - |
| PIC30_RS10635 () | 2194722..2195117 | + | 396 | WP_000158889.1 | DNA-packaging protein FI | - |
| PIC30_RS10640 () | 2195129..2195482 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| PIC30_RS10645 () | 2195494..2196072 | + | 579 | WP_001552793.1 | phage tail protein | - |
| PIC30_RS10650 () | 2196069..2196464 | + | 396 | WP_000683125.1 | phage minor tail U family protein | - |
| PIC30_RS10655 () | 2196472..2197212 | + | 741 | WP_001552794.1 | phage tail protein | - |
| PIC30_RS10660 () | 2197228..2197650 | + | 423 | WP_001552795.1 | phage minor tail protein G | - |
| PIC30_RS10665 () | 2197632..2198066 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| PIC30_RS10670 () | 2198059..2200620 | + | 2562 | WP_033554925.1 | phage tail tape measure protein | - |
| PIC30_RS10675 () | 2200617..2200946 | + | 330 | WP_000847332.1 | phage tail protein | - |
| PIC30_RS10680 () | 2200946..2201644 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| PIC30_RS10685 () | 2201650..2202393 | + | 744 | WP_016247779.1 | C40 family peptidase | - |
| PIC30_RS10690 () | 2202390..2202962 | + | 573 | WP_001552799.1 | tail assembly protein | - |
| PIC30_RS10695 () | 2203023..2206505 | + | 3483 | WP_247164779.1 | phage tail protein | - |
| PIC30_RS10700 () | 2206564..2208627 | + | 2064 | WP_247164780.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PIC30_RS10705 () | 2208624..2208902 | + | 279 | WP_001204579.1 | hypothetical protein | - |
| PIC30_RS10710 () | 2208912..2209205 | + | 294 | WP_000355700.1 | hypothetical protein | - |
| PIC30_RS10715 () | 2209224..2209343 | + | 120 | Protein_2093 | tail fiber assembly protein | - |
| PIC30_RS10720 () | 2209398..2210066 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| PIC30_RS10725 () | 2210216..2210428 | + | 213 | Protein_2095 | tail fiber assembly protein | - |
| PIC30_RS10730 () | 2210612..2212096 | - | 1485 | WP_001552997.1 | alpha/beta hydrolase | - |
| PIC30_RS10735 () | 2212283..2213236 | - | 954 | WP_021512184.1 | Protease 7 | VF |
| PIC30_RS10740 () | 2213734..2214318 | + | 585 | WP_001552996.1 | XRE family transcriptional regulator | - |
| PIC30_RS10745 () | 2214343..2214780 | - | 438 | WP_001552995.1 | acetyltransferase | - |
| PIC30_RS10750 () | 2215595..2215843 | - | 249 | WP_001552994.1 | DinI-like family protein | - |
| PIC30_RS10755 () | 2216106..2216201 | - | 96 | Protein_2101 | hypothetical protein | - |
| PIC30_RS10760 () | 2216198..2216764 | - | 567 | WP_000891620.1 | hydrolase | - |
| PIC30_RS10765 () | 2217074..2218846 | + | 1773 | WP_097494595.1 | aspartate--tRNA ligase | - |
| PIC30_RS10770 () | 2218839..2219291 | + | 453 | WP_077393227.1 | dihydroneopterin triphosphate diphosphatase | - |
| PIC30_RS10775 () | 2219320..2220060 | + | 741 | WP_000907234.1 | putative transcriptional regulatory protein YebC | VF |
| PIC30_RS10780 () | 2220095..2220616 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PIC30_RS10785 () | 2220618..2221220 | - | 603 | WP_001024939.1 | YebB family permuted papain-like enzyme | - |
| PIC30_RS10790 () | 2221292..2221357 | + | 66 | WP_072123646.1 | stress response small protein YobI | - |
| PIC30_RS10795 () | 2221496..2222107 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| PIC30_RS10800 () | 2222116..2223126 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PIC30_RS10805 () | 2223343..2224128 | - | 786 | WP_000571479.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PIC30_RS10810 () | 2224125..2224880 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| PIC30_RS10815 () | 2224959..2225891 | + | 933 | WP_001347089.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PIC30_RS10820 () | 2225907..2227229 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| PIC30_RS10825 () | 2227348..2228319 | + | 972 | WP_001296141.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PIC30_RS10830 () | 2228451..2229893 | - | 1443 | WP_271287418.1 | pyruvate kinase | - |
| PIC30_RS10835 () | 2230021..2230890 | - | 870 | WP_001056695.1 | DNA-binding transcriptional regulator HexR | - |
| PIC30_RS10840 () | 2231228..2232703 | + | 1476 | WP_000301724.1 | glucose-6-phosphate dehydrogenase | - |
| PIC30_RS10845 () | 2232938..2234749 | + | 1812 | WP_001069461.1 | phosphogluconate dehydratase | - |
| PIC30_RS10850 () | 2234786..2235427 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PIC30_RS10855 () | 2235483..2236661 | - | 1179 | WP_000173466.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PIC30_RS10860 () | 2236795..2237085 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| PIC30_RS10865 () | 2237152..2237508 | + | 357 | WP_001295500.1 | protein YebF | - |
| PIC30_RS10870 () | 2237835..2238494 | + | 660 | WP_000024728.1 | tellurite resistance TerB family protein | - |
| PIC30_RS10875 () | 2238703..2240763 | + | 2061 | WP_000936959.1 | oligopeptidase B | - |
| PIC30_RS10880 () | 2240760..2241422 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIC30_RS10885 () | 2241445..2242101 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC30_RS10890 () | 2242203..2242433 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC30_RS10895 () | 2242572..2242946 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIC30_RS10900 () | 2242950..2243822 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| PIC30_RS10905 () | 2243835..2244176 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2244206..2244474 | - | 269 | - | - | Antitoxin Detail |
| - | 2244334..2244436 | + | 103 | - | - | Toxin Detail |
| PIC30_RS10910 () | 2244571..2245227 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| PIC30_RS10915 () | 2245228..2245419 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIC30_RS10920 () | 2245524..2245760 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIC30_RS10925 () | 2245878..2247317 | - | 1440 | WP_271287419.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PIC30_RS10930 () | 2247397..2250030 | - | 2634 | WP_001332098.1 | Intermembrane transport protein YebT | VF |
| PIC30_RS10935 () | 2249999..2251282 | - | 1284 | WP_001207278.1 | membrane integrity lipid transport subunit YebS | - |
| PIC30_RS10940 () | 2251412..2251909 | + | 498 | WP_001029108.1 | L-methionine (R)-S-oxide reductase | - |
| PIC30_RS10945 () | 2252006..2252704 | + | 699 | WP_000431376.1 | RNA chaperone ProQ | - |
| PIC30_RS10950 () | 2252724..2254772 | + | 2049 | WP_001055805.1 | carboxy terminal-processing peptidase | - |
| PIC30_RS10955 () | 2254964..2255845 | + | 882 | WP_061336141.1 | protease HtpX | - |
| PIC30_RS10960 () | 2255891..2257264 | - | 1374 | WP_001296135.1 | MFS transporter | - |
| PIC30_RS10965 () | 2257441..2258232 | + | 792 | WP_001262188.1 | DNA-binding transcriptional regulator KdgR | - |
| PIC30_RS10970 () | 2258376..2258615 | - | 240 | WP_001211011.1 | YobH family protein | - |
| PIC30_RS10975 () | 2258774..2258917 | + | 144 | WP_000714545.1 | PhoP/PhoQ regulator MgrB | - |
| PIC30_RS10980 () | 2258992..2259279 | + | 288 | WP_001006866.1 | YebO family protein | - |
| PIC30_RS10985 () | 2259950..2260093 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| PIC30_RS10990 () | 2260106..2260315 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PIC30_RS10995 () | 2260481..2261290 | + | 810 | WP_000010136.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PIC30_RS11000 () | 2261287..2261853 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| PIC30_RS11005 () | 2262282..2262740 | - | 459 | WP_000156257.1 | DUF986 family protein | - |
| PIC30_RS11010 () | 2262795..2263646 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| PIC30_RS11015 () | 2263659..2264459 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|