Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2244206..2244474 | Replicon | chromosome |
| Accession | NZ_CP116071 | ||
| Organism | Escherichia coli strain DETEC-S589 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2244334..2244436 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2244206..2244474 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC30_RS10880 | 2240760..2241422 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PIC30_RS10885 | 2241445..2242101 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC30_RS10890 | 2242203..2242433 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC30_RS10895 | 2242572..2242946 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIC30_RS10900 | 2242950..2243822 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| PIC30_RS10905 | 2243835..2244176 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2244206..2244474 | - | 269 | - | - | Antitoxin |
| - | 2244334..2244436 | + | 103 | - | - | Toxin |
| PIC30_RS10910 | 2244571..2245227 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| PIC30_RS10915 | 2245228..2245419 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PIC30_RS10920 | 2245524..2245760 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PIC30_RS10925 | 2245878..2247317 | - | 1440 | WP_271287419.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2169375..2260315 | 90940 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267784 NZ_CP116071:2244334-2244436 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT267784 NZ_CP116071:c2244474-2244206 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
