MGE detailed information
MGE type: Prophage MGE length: 55293 bp
Accession: NZ_CP116044 Location: 384601..439893 Organism: Escherichia coli strain STEC1575 Replicon: chromosome
Accession: NZ_CP116044 Location: 384601..439893 Organism: Escherichia coli strain STEC1575 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA55_RS01760 (379992) | 379992..380489 | + | 498 | WP_001297295.1 | chorismate lyase | - |
| PHA55_RS01765 (380502) | 380502..381374 | + | 873 | WP_000455228.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| PHA55_RS01770 (381529) | 381529..383952 | - | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| PHA55_RS01775 (384123) | 384123..384491 | + | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| PHA55_RS01780 (384601) | 384601..385209 | + | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| PHA55_RS01785 (385282) | 385282..386607 | + | 1326 | WP_001301116.1 | MATE family efflux transporter DinF | - |
| PHA55_RS01790 (386723) | 386723..386932 | + | 210 | WP_001030593.1 | CsbD family protein | - |
| PHA55_RS01795 (386974) | 386974..387489 | - | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| PHA55_RS01800 (387807) | 387807..388088 | + | 282 | Protein_332 | DUF2713 domain-containing protein | - |
| PHA55_RS01805 (388116) | 388116..388823 | + | 708 | WP_015364382.1 | DUF2713 family protein | - |
| PHA55_RS01810 (389186) | 389186..389287 | + | 102 | Protein_334 | tRNA-dihydrouridine synthase | - |
| PHA55_RS01815 (389596) | 389596..390069 | + | 474 | WP_059242328.1 | DUF4065 domain-containing protein | Antitoxin Detail |
| PHA55_RS01820 (390092) | 390092..390640 | + | 549 | WP_053878051.1 | hypothetical protein | Toxin Detail |
| PHA55_RS01825 (390674) | 390674..390946 | - | 273 | WP_001093911.1 | pyocin activator PrtN family protein | - |
| PHA55_RS01830 (390983) | 390983..391555 | - | 573 | WP_097455382.1 | 3'-5' exonuclease | - |
| PHA55_RS01835 (391555) | 391555..392517 | - | 963 | WP_271287488.1 | ead/Ea22-like family protein | - |
| PHA55_RS01840 (392583) | 392583..392891 | - | 309 | Protein_340 | hypothetical protein | - |
| PHA55_RS01845 (392884) | 392884..393138 | - | 255 | WP_027661982.1 | hypothetical protein | - |
| PHA55_RS01850 (393135) | 393135..393374 | - | 240 | WP_000476211.1 | hypothetical protein | - |
| PHA55_RS01855 (393367) | 393367..393570 | - | 204 | WP_000111289.1 | hypothetical protein | - |
| PHA55_RS01860 (393567) | 393567..393929 | - | 363 | WP_097455379.1 | hypothetical protein | - |
| PHA55_RS01865 (393920) | 393920..394456 | - | 537 | WP_271287489.1 | 5'-deoxynucleotidase | - |
| PHA55_RS01870 (394585) | 394585..395409 | - | 825 | WP_097455378.1 | YfdQ family protein | - |
| PHA55_RS01875 (395475) | 395475..395837 | - | 363 | WP_000135680.1 | protein YfdP | - |
| PHA55_RS01880 (396549) | 396549..397241 | - | 693 | WP_001345148.1 | helix-turn-helix transcriptional regulator | - |
| PHA55_RS01885 (397339) | 397339..397599 | + | 261 | WP_001191669.1 | helix-turn-helix transcriptional regulator | - |
| PHA55_RS01890 (397592) | 397592..398143 | + | 552 | WP_023138546.1 | protein YmfL | - |
| PHA55_RS01895 (398289) | 398289..398468 | + | 180 | WP_001341559.1 | DUF4222 domain-containing protein | - |
| PHA55_RS01900 (398398) | 398398..399291 | + | 894 | WP_271287490.1 | Rha family phage regulatory protein | - |
| PHA55_RS01905 (399288) | 399288..399512 | + | 225 | WP_000620696.1 | hypothetical protein | - |
| PHA55_RS01910 (399509) | 399509..400327 | + | 819 | WP_271287491.1 | helix-turn-helix domain-containing protein | - |
| PHA55_RS01915 (400324) | 400324..400818 | + | 495 | WP_072127929.1 | PerC family transcriptional regulator | - |
| PHA55_RS01920 (400818) | 400818..401471 | + | 654 | WP_021535259.1 | phage N-6-adenine-methyltransferase | - |
| PHA55_RS01925 (401468) | 401468..401794 | + | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| PHA55_RS01930 (401791) | 401791..402180 | + | 390 | WP_137587996.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PHA55_RS01935 (402200) | 402200..403009 | + | 810 | WP_024246862.1 | KilA-N domain-containing protein | - |
| PHA55_RS01940 (403017) | 403017..404006 | + | 990 | WP_001360050.1 | DUF968 domain-containing protein | - |
| PHA55_RS01945 (404020) | 404020..404772 | + | 753 | WP_194499684.1 | antitermination protein | - |
| PHA55_RS01950 (405053) | 405053..405478 | + | 426 | WP_000115362.1 | hypothetical protein | - |
| PHA55_RS01955 (405702) | 405702..405899 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| PHA55_RS01960 (406036) | 406036..406749 | + | 714 | WP_097449976.1 | helix-turn-helix domain-containing protein | - |
| PHA55_RS01980 (407119) | 407119..408078 | + | 960 | WP_097449975.1 | Shiga toxin subunit A | VF |
| PHA55_RS01985 (408090) | 408090..408359 | + | 270 | WP_000738076.1 | Shiga toxin subunit B | VF |
| PHA55_RS01990 (408547) | 408547..408870 | - | 324 | WP_096129430.1 | anti-adapter protein IraM | - |
| PHA55_RS01995 (409136) | 409136..409351 | + | 216 | WP_097449974.1 | class II holin family protein | - |
| PHA55_RS02000 (409356) | 409356..409700 | + | 345 | WP_271287492.1 | YdfR family protein | - |
| PHA55_RS02005 (409666) | 409666..409938 | - | 273 | WP_161620918.1 | hypothetical protein | - |
| PHA55_RS02010 (410117) | 410117..410509 | + | 393 | WP_097449971.1 | putative holin | - |
| PHA55_RS02015 (410499) | 410499..410774 | + | 276 | WP_161619110.1 | phage holin family protein | - |
| PHA55_RS02020 (410777) | 410777..411154 | + | 378 | WP_089606971.1 | M15 family metallopeptidase | - |
| PHA55_RS02025 (411225) | 411225..411506 | + | 282 | WP_161620342.1 | hypothetical protein | - |
| PHA55_RS02030 (411638) | 411638..411751 | + | 114 | WP_001305859.1 | hypothetical protein | - |
| PHA55_RS02035 (412526) | 412526..413071 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| PHA55_RS02040 (413046) | 413046..414971 | + | 1926 | WP_260589788.1 | phage terminase large subunit family protein | - |
| PHA55_RS02045 (414968) | 414968..415174 | + | 207 | WP_000198149.1 | gpW family protein | - |
| PHA55_RS02050 (415171) | 415171..416772 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| PHA55_RS02055 (416753) | 416753..418072 | + | 1320 | WP_000123248.1 | S49 family peptidase | - |
| PHA55_RS02060 (418082) | 418082..418414 | + | 333 | WP_001358225.1 | head decoration protein | - |
| PHA55_RS02065 (418470) | 418470..419495 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| PHA55_RS02070 (419537) | 419537..419932 | + | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| PHA55_RS02075 (419944) | 419944..420297 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| PHA55_RS02080 (420309) | 420309..420887 | + | 579 | WP_000975081.1 | phage tail protein | - |
| PHA55_RS02085 (420884) | 420884..421279 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| PHA55_RS02090 (421287) | 421287..422027 | + | 741 | WP_001358372.1 | phage tail protein | - |
| PHA55_RS02095 (422043) | 422043..422465 | + | 423 | WP_000479142.1 | phage minor tail protein G | - |
| PHA55_RS02100 (422447) | 422447..422881 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| PHA55_RS02105 (422874) | 422874..425453 | + | 2580 | WP_260589787.1 | phage tail tape measure protein | - |
| PHA55_RS02110 (425450) | 425450..425779 | + | 330 | WP_000847373.1 | phage tail protein | - |
| PHA55_RS02115 (425779) | 425779..426477 | + | 699 | WP_001152639.1 | phage minor tail protein L | - |
| PHA55_RS02120 (426483) | 426483..427226 | + | 744 | WP_000194783.1 | C40 family peptidase | - |
| PHA55_RS02125 (427223) | 427223..427795 | + | 573 | WP_000847669.1 | tail assembly protein | - |
| PHA55_RS02130 (427856) | 427856..431353 | + | 3498 | WP_271287493.1 | host specificity protein J | - |
| PHA55_RS02135 (431424) | 431424..432023 | + | 600 | WP_001233090.1 | Outer membrane protein X | VF |
| PHA55_RS02140 (432078) | 432078..432464 | + | 387 | Protein_397 | prophage tail fiber N-terminal domain-containing protein | - |
| PHA55_RS02145 (433974) | 433974..434219 | + | 246 | WP_271287494.1 | hypothetical protein | - |
| PHA55_RS02150 (434337) | 434337..434585 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| PHA55_RS02155 (434647) | 434647..435744 | - | 1098 | WP_000332269.1 | hypothetical protein ; Integrase | Integrase |
| PHA55_RS02160 (435833) | 435833..436870 | + | 1038 | WP_000543841.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| PHA55_RS02165 (437004) | 437004..437246 | + | 243 | WP_000891389.1 | envelope stress response protein PspG | - |
| PHA55_RS02170 (437412) | 437412..438395 | - | 984 | WP_000235522.1 | Quinone oxidoreductase 1 | VF |
| PHA55_RS02175 (438478) | 438478..439893 | + | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| PHA55_RS02180 (439946) | 439946..441025 | + | 1080 | WP_001147324.1 | alanine racemase | - |
| PHA55_RS02185 (441278) | 441278..442471 | + | 1194 | WP_000486964.1 | aromatic amino acid transaminase | - |
| PHA55_RS02190 (442693) | 442693..442944 | - | 252 | WP_000275035.1 | hypothetical protein | - |
| PHA55_RS02195 (442974) | 442974..443196 | - | 223 | Protein_408 | hypothetical protein | - |
| PHA55_RS02200 (443598) | 443598..444311 | + | 714 | WP_001307512.1 | acid phosphatase AphA | - |
| PHA55_RS02205 (444422) | 444422..444838 | + | 417 | WP_000270372.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|