MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82828 bp
Accession: NZ_CP115778 Location: 1..82828 Organism: Paracoccus albus strain SCSIO 80058 Replicon: plasmid p3
Accession: NZ_CP115778 Location: 1..82828 Organism: Paracoccus albus strain SCSIO 80058 Replicon: plasmid p3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAF20_RS18245 (PAF20_18245) | 79..1437 | + | 1359 | WP_190285508.1 | AAA family ATPase | - |
| PAF20_RS18250 (PAF20_18250) | 1434..2450 | + | 1017 | WP_271073652.1 | ParB N-terminal domain-containing protein | - |
| PAF20_RS18255 (PAF20_18255) | 2671..3951 | + | 1281 | WP_271073653.1 | plasmid replication protein RepC | - |
| PAF20_RS18260 (PAF20_18260) | 3964..5079 | - | 1116 | WP_271073654.1 | tyrosine-type recombinase/integrase | - |
| PAF20_RS18265 (PAF20_18265) | 5205..6089 | + | 885 | WP_271073655.1 | DUF1403 family protein | - |
| PAF20_RS18270 (PAF20_18270) | 6092..6688 | + | 597 | WP_271073656.1 | SMC-Scp complex subunit ScpB | - |
| PAF20_RS18275 (PAF20_18275) | 6822..7286 | + | 465 | WP_271073657.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| PAF20_RS18280 (PAF20_18280) | 7283..7858 | + | 576 | WP_009179450.1 | PIN domain-containing protein | Toxin Detail |
| PAF20_RS18285 (PAF20_18285) | 7911..8627 | - | 717 | WP_009179413.1 | SprT family zinc-dependent metalloprotease | - |
| PAF20_RS18290 (PAF20_18290) | 8624..11848 | - | 3225 | WP_271073658.1 | type I restriction endonuclease subunit R | - |
| PAF20_RS18295 (PAF20_18295) | 11845..13572 | - | 1728 | WP_271073659.1 | TIGR04141 family sporadically distributed protein | - |
| PAF20_RS18300 (PAF20_18300) | 13572..14774 | - | 1203 | WP_271073660.1 | restriction endonuclease subunit S | - |
| PAF20_RS18305 (PAF20_18305) | 14767..16284 | - | 1518 | WP_271073661.1 | type I restriction-modification system subunit M | - |
| PAF20_RS18310 (PAF20_18310) | 16281..16874 | - | 594 | WP_039983903.1 | restriction endonuclease subunit S | - |
| PAF20_RS18315 (PAF20_18315) | 17271..18188 | - | 918 | WP_271073662.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| PAF20_RS18320 (PAF20_18320) | 18178..19008 | - | 831 | WP_271073663.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| PAF20_RS18325 (PAF20_18325) | 19255..19857 | - | 603 | WP_271073664.1 | plasmid pRiA4b ORF-3 family protein | - |
| PAF20_RS18330 (PAF20_18330) | 20763..21101 | + | 339 | WP_207020756.1 | DUF736 family protein | - |
| PAF20_RS18335 (PAF20_18335) | 21742..21918 | + | 177 | WP_231580204.1 | hypothetical protein | - |
| PAF20_RS18340 (PAF20_18340) | 22331..23053 | + | 723 | WP_271073665.1 | helix-turn-helix domain-containing protein | - |
| PAF20_RS18345 (PAF20_18345) | 23046..24974 | + | 1929 | WP_271073666.1 | T-DNA border endonuclease VirD2 | Relaxase |
| PAF20_RS18350 (PAF20_18350) | 24989..26902 | + | 1914 | WP_271073667.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PAF20_RS18355 (PAF20_18355) | 26972..27700 | - | 729 | WP_271073668.1 | hypothetical protein | - |
| PAF20_RS18360 (PAF20_18360) | 27948..28739 | - | 792 | WP_271073669.1 | WYL domain-containing protein | - |
| PAF20_RS18365 (PAF20_18365) | 28812..29948 | + | 1137 | WP_271073670.1 | exonuclease SbcCD subunit D | - |
| PAF20_RS18370 (PAF20_18370) | 29945..33025 | + | 3081 | WP_271073671.1 | SMC family ATPase | - |
| PAF20_RS18375 (PAF20_18375) | 33419..33667 | + | 249 | WP_065331062.1 | hypothetical protein | - |
| PAF20_RS18380 (PAF20_18380) | 33777..34718 | + | 942 | WP_271073672.1 | toll/interleukin-1 receptor domain-containing protein | - |
| PAF20_RS18385 (PAF20_18385) | 34898..35419 | + | 522 | WP_271073673.1 | hypothetical protein | - |
| PAF20_RS18390 (PAF20_18390) | 35559..36548 | - | 990 | WP_271073674.1 | Type IV secretion system protein VirB11 | VF |
| PAF20_RS18395 (PAF20_18395) | 36548..37969 | - | 1422 | WP_271073675.1 | Protein virB10 | VF |
| PAF20_RS18400 (PAF20_18400) | 37972..38694 | - | 723 | WP_065818625.1 | Type IV secretion system protein virB9 | VF |
| PAF20_RS18405 (PAF20_18405) | 38700..39380 | - | 681 | WP_065818624.1 | Type IV secretion system protein PtlE | VF |
| PAF20_RS18410 (PAF20_18410) | 39398..40411 | - | 1014 | WP_065818623.1 | hypothetical protein | VF |
| PAF20_RS18415 (PAF20_18415) | 40412..40837 | - | 426 | WP_083213174.1 | hypothetical protein | - |
| PAF20_RS18420 (PAF20_18420) | 40846..41613 | - | 768 | WP_065818621.1 | type IV secretion system protein | - |
| PAF20_RS18425 (PAF20_18425) | 41610..42722 | - | 1113 | WP_207020716.1 | lytic transglycosylase domain-containing protein | - |
| PAF20_RS18430 (PAF20_18430) | 42719..42928 | - | 210 | WP_207020715.1 | hypothetical protein | - |
| PAF20_RS18435 (PAF20_18435) | 42925..45354 | - | 2430 | WP_271073625.1 | Type IV secretion system protein virB4 | VF |
| PAF20_RS18440 (PAF20_18440) | 45293..45571 | - | 279 | WP_271073626.1 | VirB3 family type IV secretion system protein | - |
| PAF20_RS18445 (PAF20_18445) | 45701..45982 | - | 282 | WP_009574106.1 | TrbC/VirB2 family protein | - |
| PAF20_RS18450 (PAF20_18450) | 45999..46556 | - | 558 | WP_271073676.1 | lytic transglycosylase domain-containing protein | - |
| PAF20_RS18455 (PAF20_18455) | 46636..46950 | - | 315 | WP_080458281.1 | hypothetical protein | - |
| PAF20_RS18460 (PAF20_18460) | 47083..47661 | + | 579 | WP_207020712.1 | hypothetical protein | - |
| PAF20_RS18465 (PAF20_18465) | 47655..47855 | - | 201 | WP_207020711.1 | hypothetical protein | - |
| PAF20_RS18470 (PAF20_18470) | 47932..48102 | - | 171 | WP_240504174.1 | helix-turn-helix transcriptional regulator | - |
| PAF20_RS18475 (PAF20_18475) | 48412..49071 | - | 660 | WP_271073627.1 | TetR/AcrR family transcriptional regulator | - |
| PAF20_RS18480 (PAF20_18480) | 49095..50258 | - | 1164 | WP_271073628.1 | ABC transporter substrate-binding protein | - |
| PAF20_RS18485 (PAF20_18485) | 50279..52090 | - | 1812 | WP_271073629.1 | long-chain fatty acid--CoA ligase | - |
| PAF20_RS18490 (PAF20_18490) | 52123..52893 | - | 771 | WP_271073630.1 | ABC transporter ATP-binding protein | - |
| PAF20_RS18495 (PAF20_18495) | 52890..53657 | - | 768 | WP_271073631.1 | ABC transporter ATP-binding protein | - |
| PAF20_RS18500 (PAF20_18500) | 53654..54733 | - | 1080 | WP_271073632.1 | branched-chain amino acid ABC transporter permease | - |
| PAF20_RS18505 (PAF20_18505) | 54737..55618 | - | 882 | WP_271073633.1 | branched-chain amino acid ABC transporter permease | - |
| PAF20_RS18510 (PAF20_18510) | 55615..56730 | - | 1116 | WP_271073634.1 | CaiB/BaiF CoA-transferase family protein | - |
| PAF20_RS18515 (PAF20_18515) | 56735..57508 | - | 774 | WP_271073635.1 | putative oxidoreductase | VF |
| PAF20_RS18520 (PAF20_18520) | 57517..58653 | - | 1137 | WP_271073636.1 | Caffeyl-CoA reductase-Etf complex subunit CarC | VF |
| PAF20_RS18525 (PAF20_18525) | 58663..59901 | - | 1239 | WP_271073637.1 | thiolase family protein | - |
| PAF20_RS18530 (PAF20_18530) | 59914..60702 | - | 789 | WP_271073638.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PAF20_RS18535 (PAF20_18535) | 60991..61311 | + | 321 | Protein_58 | IS256 family transposase ISMtsp13 | Transposase |
| PAF20_RS18540 (PAF20_18540) | 61607..62992 | - | 1386 | WP_271073639.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| PAF20_RS18545 (PAF20_18545) | 63019..63600 | - | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| PAF20_RS18550 (PAF20_18550) | 63719..64381 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| PAF20_RS18555 (PAF20_18555) | 64555..65613 | - | 1059 | WP_271073640.1 | MBL fold metallo-hydrolase | - |
| PAF20_RS18560 (PAF20_18560) | 66101..66727 | - | 627 | Protein_63 | SMC-Scp complex subunit ScpB | - |
| PAF20_RS18565 (PAF20_18565) | 66729..67580 | - | 852 | WP_271073677.1 | DUF1403 family protein | - |
| PAF20_RS18570 (PAF20_18570) | 67749..68888 | + | 1140 | WP_271073641.1 | tyrosine-type recombinase/integrase | - |
| PAF20_RS18575 (PAF20_18575) | 69369..71534 | + | 2166 | WP_271073642.1 | ParB/RepB/Spo0J family partition protein | - |
| PAF20_RS18580 (PAF20_18580) | 71661..72041 | + | 381 | WP_271073643.1 | DUF3768 domain-containing protein | - |
| PAF20_RS18585 (PAF20_18585) | 72158..72454 | + | 297 | WP_067264293.1 | hypothetical protein | - |
| PAF20_RS18590 (PAF20_18590) | 72534..72917 | + | 384 | WP_271073644.1 | hypothetical protein | - |
| PAF20_RS18595 (PAF20_18595) | 72919..73395 | + | 477 | WP_271073645.1 | hypothetical protein | - |
| PAF20_RS18600 (PAF20_18600) | 73502..74137 | + | 636 | WP_271073646.1 | hypothetical protein | - |
| PAF20_RS18605 (PAF20_18605) | 74652..79049 | + | 4398 | WP_271073647.1 | strawberry notch family protein | - |
| PAF20_RS18610 (PAF20_18610) | 79046..80092 | + | 1047 | WP_271073648.1 | toprim domain-containing protein | - |
| PAF20_RS18615 (PAF20_18615) | 80391..81302 | + | 912 | WP_271073649.1 | DUF2493 domain-containing protein | - |
| PAF20_RS18620 (PAF20_18620) | 81424..81759 | - | 336 | WP_271073650.1 | hypothetical protein | - |
| PAF20_RS18625 (PAF20_18625) | 82357..82695 | + | 339 | WP_271073651.1 | DUF736 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|