MGE detailed information
MGE type: Prophage MGE length: 23828 bp
Accession: NZ_CP115665 Location: 4484020..4507847 Organism: Pseudomonas putida strain PD584 Replicon: chromosome
Accession: NZ_CP115665 Location: 4484020..4507847 Organism: Pseudomonas putida strain PD584 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PED37_RS20385 (PED37_20385) | 4479026..4480879 | + | 1854 | WP_010954903.1 | NADH-quinone oxidoreductase subunit L | - |
| PED37_RS20390 (PED37_20390) | 4480920..4482452 | + | 1533 | WP_010954904.1 | NADH-quinone oxidoreductase subunit M | - |
| PED37_RS20395 (PED37_20395) | 4482460..4483929 | + | 1470 | WP_010954905.1 | NADH-quinone oxidoreductase subunit NuoN | - |
| PED37_RS20400 (PED37_20400) | 4484020..4484283 | - | 264 | WP_010954906.1 | ogr/Delta-like zinc finger family protein | - |
| PED37_RS20405 (PED37_20405) | 4484463..4484840 | + | 378 | WP_010954907.1 | helix-turn-helix domain-containing protein | - |
| PED37_RS20410 (PED37_20410) | 4484837..4485199 | - | 363 | WP_010954908.1 | hypothetical protein | - |
| PED37_RS20415 (PED37_20415) | 4485192..4485539 | - | 348 | WP_010954909.1 | head completion/stabilization protein | - |
| PED37_RS20420 (PED37_20420) | 4485551..4485799 | - | 249 | WP_003251454.1 | Transcriptional activator protein LasR | VF |
| PED37_RS20425 (PED37_20425) | 4486020..4488092 | + | 2073 | WP_010954910.1 | TonB-dependent receptor | - |
| PED37_RS20430 (PED37_20430) | 4488196..4488756 | - | 561 | WP_003251456.1 | class I chromate reductase ChrR | - |
| PED37_RS20435 (PED37_20435) | 4488913..4489131 | + | 219 | WP_010954911.1 | hypothetical protein | - |
| PED37_RS20440 (PED37_20440) | 4489115..4491364 | - | 2250 | WP_049588234.1 | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | - |
| PED37_RS20445 (PED37_20445) | 4491492..4492250 | - | 759 | WP_010954912.1 | DNA polymerase III subunit epsilon | - |
| PED37_RS20450 (PED37_20450) | 4492301..4492747 | - | 447 | WP_003251460.1 | ribonuclease HI | - |
| PED37_RS20455 (PED37_20455) | 4492763..4493536 | - | 774 | WP_003251461.1 | methyltransferase domain-containing protein | - |
| PED37_RS20460 (PED37_20460) | 4493622..4494401 | + | 780 | WP_010954914.1 | hydroxyacylglutathione hydrolase | - |
| PED37_RS20465 (PED37_20465) | 4494502..4495932 | + | 1431 | WP_010954915.1 | Membrane-bound lytic murein transglycosylase D | VF |
| PED37_RS20470 (PED37_20470) | 4496153..4497982 | + | 1830 | WP_010954916.1 | extracellular solute-binding protein | - |
| PED37_RS20475 (PED37_20475) | 4497979..4499814 | + | 1836 | WP_010954917.1 | extracellular solute-binding protein | - |
| PED37_RS20480 (PED37_20480) | 4499816..4500889 | + | 1074 | WP_010954918.1 | microcin C ABC transporter permease YejB | - |
| PED37_RS20485 (PED37_20485) | 4500891..4501910 | + | 1020 | WP_010954919.1 | ABC transporter permease | - |
| PED37_RS20490 (PED37_20490) | 4501912..4503516 | + | 1605 | WP_010954920.1 | putative ABC transporter ATP-binding protein YejF | VF |
| PED37_RS20495 (PED37_20495) | 4503664..4504131 | + | 468 | WP_049588231.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| PED37_RS20500 (PED37_20500) | 4504128..4504703 | + | 576 | WP_010954922.1 | PIN domain-containing protein | Toxin Detail |
| PED37_RS20505 (PED37_20505) | 4504917..4507847 | + | 2931 | WP_049588229.1 | aminotransferase | - |
| PED37_RS20510 (PED37_20510) | 4507851..4509074 | - | 1224 | WP_010954925.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PED37_RS20515 (PED37_20515) | 4509165..4510070 | + | 906 | WP_010954926.1 | LysR family transcriptional regulator | - |
| PED37_RS20520 (PED37_20520) | 4510132..4510827 | - | 696 | WP_010954927.1 | response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA313, TA20571 | NC_002947 | 4671229..4695056 | 0 |