MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 50926 bp
Accession: NZ_CP115174 Location: 311322..362247 Organism: Sphingomonas sp. PAMB00755 Replicon: chromosome
Accession: NZ_CP115174 Location: 311322..362247 Organism: Sphingomonas sp. PAMB00755 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PBT88_RS01560 (PBT88_01560) | 311299..312981 | - | 1683 | WP_270079137.1 | recombinase family protein | - |
| PBT88_RS01565 (PBT88_01565) | 313003..313389 | - | 387 | WP_270077502.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PBT88_RS01570 (PBT88_01570) | 313383..313598 | - | 216 | WP_270077503.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| PBT88_RS01575 (PBT88_01575) | 313675..313869 | - | 195 | WP_270077504.1 | hypothetical protein | - |
| PBT88_RS01580 (PBT88_01580) | 313850..314092 | - | 243 | WP_270077505.1 | hypothetical protein ; Integrase | Integrase |
| PBT88_RS01585 (PBT88_01585) | 314474..315502 | - | 1029 | WP_270077506.1 | hypothetical protein | - |
| PBT88_RS01590 (PBT88_01590) | 316202..316819 | + | 618 | WP_270077507.1 | hypothetical protein | - |
| PBT88_RS01595 (PBT88_01595) | 316812..317390 | + | 579 | WP_270077508.1 | hypothetical protein | VF |
| PBT88_RS01600 (PBT88_01600) | 317463..317720 | - | 258 | WP_270077509.1 | conjugal transfer protein TraD | - |
| PBT88_RS01605 (PBT88_01605) | 317734..318060 | - | 327 | WP_270077510.1 | conjugal transfer protein TraD | - |
| PBT88_RS01610 (PBT88_01610) | 318232..321231 | + | 3000 | WP_270079138.1 | Ti-type conjugative transfer relaxase TraA | - |
| PBT88_RS01615 (PBT88_01615) | 321243..321764 | + | 522 | WP_270077511.1 | hypothetical protein | - |
| PBT88_RS01620 (PBT88_01620) | 321851..322246 | + | 396 | WP_270077512.1 | DUF559 domain-containing protein | - |
| PBT88_RS01625 (PBT88_01625) | 323129..323323 | + | 195 | WP_270077513.1 | hypothetical protein | - |
| PBT88_RS01630 (PBT88_01630) | 324328..325509 | + | 1182 | WP_270077161.1 | IS256 family transposase IS406 | Transposase |
| PBT88_RS01635 (PBT88_01635) | 325502..326197 | + | 696 | WP_270077514.1 | hypothetical protein | - |
| PBT88_RS01640 (PBT88_01640) | 326393..327763 | - | 1371 | WP_270077515.1 | M1 family aminopeptidase | - |
| PBT88_RS01645 (PBT88_01645) | 327883..328755 | - | 873 | WP_270077516.1 | alpha/beta hydrolase | - |
| PBT88_RS01650 (PBT88_01650) | 328983..329864 | - | 882 | WP_270077517.1 | subclass B3 metallo-beta-lactamase | - |
| PBT88_RS01655 (PBT88_01655) | 329967..330872 | + | 906 | WP_270077518.1 | HTH-type transcriptional activator AmpR | VF |
| PBT88_RS01660 (PBT88_01660) | 330905..331696 | + | 792 | WP_270077519.1 | DUF2807 domain-containing protein | - |
| PBT88_RS01665 (PBT88_01665) | 331729..332538 | + | 810 | WP_270077520.1 | DUF5694 domain-containing protein | - |
| PBT88_RS01670 (PBT88_01670) | 332750..333205 | - | 456 | WP_270077521.1 | MarR family transcriptional regulator | - |
| PBT88_RS01675 (PBT88_01675) | 333301..334047 | + | 747 | WP_270077522.1 | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | VF |
| PBT88_RS01680 (PBT88_01680) | 334271..334846 | - | 576 | WP_270077523.1 | NAD(P)-binding domain-containing protein | - |
| PBT88_RS01685 (PBT88_01685) | 334946..335659 | - | 714 | WP_270077524.1 | Cyclic-di-GMP-binding biofilm dispersal mediator protein | VF |
| PBT88_RS01690 (PBT88_01690) | 335731..336351 | + | 621 | WP_270077525.1 | TetR/AcrR family transcriptional regulator | - |
| PBT88_RS01695 (PBT88_01695) | 336499..336657 | - | 159 | WP_270077526.1 | hypothetical protein | - |
| PBT88_RS01705 (PBT88_01705) | 338945..339427 | + | 483 | Protein_331 | IS256 family transposase ISGdi8 | Transposase |
| PBT88_RS01710 (PBT88_01710) | 340351..341538 | - | 1188 | WP_270077528.1 | IS256 family transposase ISRle12 | Transposase |
| PBT88_RS01715 (PBT88_01715) | 341565..342881 | + | 1317 | WP_270077529.1 | reverse transcriptase domain-containing protein | - |
| PBT88_RS01720 (PBT88_01720) | 343045..344346 | - | 1302 | WP_270077530.1 | IS110 family transposase ISMpa1 | Transposase |
| PBT88_RS01725 (PBT88_01725) | 344675..345385 | + | 711 | Protein_335 | IS256 family transposase ISGdi8 | Transposase |
| PBT88_RS01730 (PBT88_01730) | 345520..346803 | - | 1284 | WP_270077531.1 | MFS transporter | - |
| PBT88_RS01735 (PBT88_01735) | 346836..347030 | - | 195 | WP_270077532.1 | hypothetical protein | - |
| PBT88_RS01740 (PBT88_01740) | 347007..347762 | + | 756 | WP_270077533.1 | LysR substrate-binding domain-containing protein | - |
| PBT88_RS01745 (PBT88_01745) | 348199..348606 | + | 408 | WP_270077534.1 | hypothetical protein | - |
| PBT88_RS01750 (PBT88_01750) | 348848..350644 | + | 1797 | WP_270077535.1 | peptidase M61 | - |
| PBT88_RS01755 (PBT88_01755) | 350966..351814 | + | 849 | WP_270077536.1 | IS91 family transposase ISMno24 | Transposase |
| PBT88_RS01760 (PBT88_01760) | 351874..352275 | + | 402 | WP_270077537.1 | IS5 family transposase ISPko5 | Transposase |
| PBT88_RS01765 (PBT88_01765) | 352529..352741 | - | 213 | Protein_343 | ATP-binding protein | - |
| PBT88_RS01770 (PBT88_01770) | 352898..353680 | - | 783 | WP_270077538.1 | helix-turn-helix transcriptional regulator | - |
| PBT88_RS01775 (PBT88_01775) | 353832..354860 | + | 1029 | WP_270077539.1 | medium chain dehydrogenase/reductase family protein | - |
| PBT88_RS01780 (PBT88_01780) | 354903..355715 | + | 813 | WP_270077540.1 | alpha/beta fold hydrolase | - |
| PBT88_RS01785 (PBT88_01785) | 355842..356897 | - | 1056 | WP_270077541.1 | MBL fold metallo-hydrolase | - |
| PBT88_RS01790 (PBT88_01790) | 356943..357545 | + | 603 | WP_270077542.1 | TetR/AcrR family transcriptional regulator | - |
| PBT88_RS01795 (PBT88_01795) | 357763..357954 | - | 192 | WP_270077543.1 | hypothetical protein | VF |
| PBT88_RS01800 (PBT88_01800) | 358217..358432 | + | 216 | WP_270077544.1 | hypothetical protein | - |
| PBT88_RS01805 (PBT88_01805) | 358486..358800 | + | 315 | WP_270077545.1 | hypothetical protein | - |
| PBT88_RS01810 (PBT88_01810) | 358929..359645 | - | 717 | WP_270077546.1 | helix-turn-helix domain-containing protein | - |
| PBT88_RS01815 (PBT88_01815) | 359747..360616 | + | 870 | WP_270077547.1 | Quinone oxidoreductase 2 | VF |
| PBT88_RS01820 (PBT88_01820) | 360603..360920 | + | 318 | Protein_354 | IS21 family transposase ISSsp4 | Transposase |
| PBT88_RS01825 (PBT88_01825) | 361041..361439 | - | 399 | WP_270077548.1 | hypothetical protein | - |
| PBT88_RS01830 (PBT88_01830) | 361432..361896 | + | 465 | WP_270077549.1 | group II intron maturase-specific domain-containing protein | - |
| PBT88_RS01835 (PBT88_01835) | 362656..363276 | + | 621 | WP_270077550.1 | RNA polymerase sigma factor | - |
| PBT88_RS01840 (PBT88_01840) | 363239..364183 | + | 945 | WP_270077551.1 | DUF4880 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|