MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 120881 bp
Accession: NZ_CP114789 Location: 1..120881 Organism: Roseibium sp. Sym1 Replicon: plasmid unnamed3
Accession: NZ_CP114789 Location: 1..120881 Organism: Roseibium sp. Sym1 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6760_RS32335 | 432..713 | + | 282 | WP_062492108.1 | hypothetical protein | - |
| O6760_RS32340 | 1103..1357 | + | 255 | WP_062492109.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| O6760_RS32345 | 1329..1778 | + | 450 | WP_152512500.1 | hypothetical protein | - |
| O6760_RS32350 | 1793..2026 | + | 234 | WP_152508075.1 | hypothetical protein | - |
| O6760_RS32355 | 2027..2473 | + | 447 | WP_152508076.1 | hypothetical protein | - |
| O6760_RS32360 | 2488..2940 | - | 453 | WP_152508077.1 | MucR family transcriptional regulator | - |
| O6760_RS32365 | 3580..4830 | + | 1251 | WP_152512499.1 | IS110 family transposase ISMpa1 | Transposase |
| O6760_RS32370 | 5410..5865 | + | 456 | WP_062492122.1 | hypothetical protein | - |
| O6760_RS32375 | 5869..6714 | + | 846 | WP_062492124.1 | methyltransferase | - |
| O6760_RS32380 | 7490..9298 | - | 1809 | WP_152508056.1 | phosphomethylpyrimidine synthase ThiC | - |
| O6760_RS32385 | 9785..10978 | + | 1194 | WP_088665297.1 | hypothetical protein | VF |
| O6760_RS32390 | 10982..11983 | + | 1002 | WP_152508057.1 | plasmid partitioning protein RepB | - |
| O6760_RS32395 | 12207..13463 | + | 1257 | WP_062492133.1 | plasmid replication protein RepC | - |
| O6760_RS32400 | 13578..13820 | + | 243 | WP_082809967.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| O6760_RS32405 | 13817..14224 | + | 408 | WP_062492135.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| O6760_RS32410 | 14449..14655 | + | 207 | WP_062492137.1 | antitoxin VbhA family protein | - |
| O6760_RS32415 | 14720..15610 | + | 891 | Protein_17 | Fic family protein | - |
| O6760_RS32420 | 15707..16438 | + | 732 | WP_228148177.1 | BID domain-containing protein | - |
| O6760_RS32425 | 16714..17058 | + | 345 | WP_062492226.1 | DUF736 family protein | - |
| O6760_RS32430 | 17363..17650 | + | 288 | WP_062492139.1 | hypothetical protein | - |
| O6760_RS32435 | 17808..19712 | - | 1905 | WP_265733584.1 | hypothetical protein | VF |
| O6760_RS32440 | 19657..19914 | - | 258 | WP_062492143.1 | conjugal transfer protein TraD | - |
| O6760_RS32445 | 19961..20212 | - | 252 | WP_062492145.1 | TraC family protein | - |
| O6760_RS32450 | 20524..21666 | - | 1143 | WP_152508066.1 | hypothetical protein | - |
| O6760_RS32455 | 21883..25260 | + | 3378 | WP_152508012.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| O6760_RS32460 | 25296..25814 | + | 519 | WP_088665296.1 | conjugative transfer signal peptidase TraF | - |
| O6760_RS32465 | 25849..26973 | + | 1125 | WP_062492230.1 | conjugal transfer protein TraB | - |
| O6760_RS32470 | 26978..27604 | + | 627 | WP_062492152.1 | TraH family protein | - |
| O6760_RS32475 | 27601..27969 | + | 369 | WP_062492154.1 | thermonuclease family protein | - |
| O6760_RS32480 | 27966..28190 | - | 225 | WP_062492156.1 | helix-turn-helix transcriptional regulator | - |
| O6760_RS32485 | 28505..29221 | - | 717 | WP_152508014.1 | hypothetical protein | - |
| O6760_RS32490 | 29222..32074 | - | 2853 | WP_209171745.1 | N-6 DNA methylase | - |
| O6760_RS32495 | 32102..32296 | - | 195 | WP_062492162.1 | hypothetical protein | - |
| O6760_RS32500 | 32893..33855 | + | 963 | WP_088665295.1 | radical SAM protein | - |
| O6760_RS32505 | 33852..34436 | + | 585 | WP_062492232.1 | 3'-5' exonuclease | - |
| O6760_RS32510 | 34433..35017 | + | 585 | WP_152508015.1 | AAA family ATPase | - |
| O6760_RS32515 | 35082..36512 | + | 1431 | WP_062492166.1 | HD domain-containing protein | - |
| O6760_RS32520 | 36880..37725 | - | 846 | WP_152508016.1 | DUF1194 domain-containing protein | - |
| O6760_RS32525 | 37753..38133 | - | 381 | WP_152508017.1 | YkvA family protein | - |
| O6760_RS32530 | 38475..39899 | - | 1425 | WP_152508018.1 | ISNCY family transposase ISRel10 | Transposase |
| O6760_RS32535 | 40082..41077 | - | 996 | WP_077294751.1 | IS30 family transposase ISRssp4 | Transposase |
| O6760_RS32540 | 41240..42118 | - | 879 | WP_152508043.1 | Ribokinase | VF |
| O6760_RS32545 | 42125..42997 | - | 873 | WP_152508042.1 | MurR/RpiR family transcriptional regulator | - |
| O6760_RS32550 | 42994..43968 | - | 975 | WP_152508041.1 | ABC transporter permease | - |
| O6760_RS32555 | 43974..45494 | - | 1521 | WP_152508040.1 | Ribose import ATP-binding protein RbsA | VF |
| O6760_RS32560 | 45563..46609 | - | 1047 | WP_152508039.1 | substrate-binding domain-containing protein | - |
| O6760_RS32565 | 46640..47629 | - | 990 | WP_152508038.1 | TIM barrel protein | - |
| O6760_RS32570 | 47731..48243 | - | 513 | Protein_48 | NAD(P)H-dependent oxidoreductase | - |
| O6760_RS32575 | 48201..48839 | - | 639 | WP_050474501.1 | CDGSH iron-sulfur domain-containing protein | - |
| O6760_RS32580 | 48949..50148 | - | 1200 | WP_050474500.1 | 3-oxoadipyl-CoA thiolase | - |
| O6760_RS32585 | 50173..51099 | - | 927 | WP_152508037.1 | FAD-binding protein | - |
| O6760_RS32590 | 51101..51862 | - | 762 | WP_050474498.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| O6760_RS32595 | 51931..52686 | - | 756 | WP_050474497.1 | Cyclopentanol dehydrogenase | VF |
| O6760_RS32600 | 52779..54416 | - | 1638 | WP_050474496.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| O6760_RS32605 | 54534..55436 | - | 903 | WP_050474495.1 | Monoterpene epsilon-lactone hydrolase | VF |
| O6760_RS32610 | 55629..57704 | - | 2076 | WP_050474494.1 | FAD-dependent oxidoreductase | - |
| O6760_RS32615 | 57713..59197 | - | 1485 | WP_228866873.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| O6760_RS32620 | 59343..60134 | + | 792 | WP_050474493.1 | IclR family transcriptional regulator | - |
| O6760_RS32625 | 60149..61312 | + | 1164 | WP_050474492.1 | acyl-CoA dehydrogenase family protein | - |
| O6760_RS32630 | 61330..62484 | + | 1155 | WP_152508055.1 | iron-containing alcohol dehydrogenase | - |
| O6760_RS32635 | 62484..63686 | + | 1203 | WP_152508036.1 | CoA transferase | - |
| O6760_RS32640 | 63740..64621 | + | 882 | WP_209171763.1 | HTH-type transcriptional activator RhaR | VF |
| O6760_RS32645 | 64878..65078 | + | 201 | WP_269586482.1 | hypothetical protein | - |
| O6760_RS32650 | 65162..66925 | - | 1764 | WP_152508035.1 | arsenical pump-driving ATPase | - |
| O6760_RS32655 | 67140..68237 | + | 1098 | WP_152508034.1 | Fic family protein | - |
| O6760_RS32660 | 68370..68717 | + | 348 | WP_074556315.1 | IS66 family transposase ISAli15 | Transposase |
| O6760_RS32665 | 68714..69061 | + | 348 | WP_152508033.1 | IS66 family transposase ISAzs18 | Transposase |
| O6760_RS32670 | 69121..69645 | + | 525 | WP_152508032.1 | IS66 family transposase ISPre3 | Transposase |
| O6760_RS32675 | 69635..70153 | - | 519 | WP_077294832.1 | thermonuclease family protein | - |
| O6760_RS32680 | 70313..70849 | - | 537 | WP_077294835.1 | Rrf2 family transcriptional regulator | - |
| O6760_RS32685 | 70855..72198 | - | 1344 | WP_152508030.1 | plasmid replication protein RepC | - |
| O6760_RS32690 | 72847..73860 | + | 1014 | WP_152508029.1 | hypothetical protein | VF |
| O6760_RS32695 | 73850..74209 | + | 360 | WP_152508028.1 | TrbC/VirB2 family protein | - |
| O6760_RS32700 | 74202..74498 | + | 297 | WP_077294672.1 | conjugal transfer protein TrbD | - |
| O6760_RS32705 | 74501..76948 | + | 2448 | WP_152508027.1 | conjugal transfer protein TrbE | - |
| O6760_RS32710 | 76926..77720 | + | 795 | WP_152508026.1 | P-type conjugative transfer protein TrbJ | - |
| O6760_RS32715 | 77725..77967 | + | 243 | WP_152508025.1 | hypothetical protein | - |
| O6760_RS32720 | 77988..79205 | + | 1218 | WP_152508024.1 | P-type conjugative transfer protein TrbL | - |
| O6760_RS32725 | 79221..79883 | + | 663 | WP_062492203.1 | conjugal transfer protein TrbF | - |
| O6760_RS32730 | 79949..80746 | + | 798 | WP_228866879.1 | P-type conjugative transfer protein TrbG | - |
| O6760_RS32735 | 80749..81213 | + | 465 | WP_209171762.1 | conjugal transfer protein TrbH | - |
| O6760_RS32740 | 81226..82569 | + | 1344 | WP_152508021.1 | hypothetical protein | VF |
| O6760_RS32745 | 82855..83334 | - | 480 | WP_152508020.1 | hypothetical protein | - |
| O6760_RS32750 | 83522..85306 | - | 1785 | WP_152508019.1 | HAMP domain-containing methyl-accepting chemotaxis protein | - |
| O6760_RS32755 | 85995..86910 | - | 916 | Protein_85 | DMT family transporter | - |
| O6760_RS32760 | 87514..88197 | + | 684 | WP_152508044.1 | SOS response-associated peptidase | - |
| O6760_RS32765 | 88222..88521 | + | 300 | WP_152508045.1 | I78 family peptidase inhibitor | - |
| O6760_RS32770 | 88628..88969 | + | 342 | WP_152508046.1 | hypothetical protein | - |
| O6760_RS32775 | 89540..89704 | + | 165 | WP_173014038.1 | hypothetical protein | - |
| O6760_RS32780 | 89782..90414 | - | 633 | WP_152508047.1 | zeta toxin family protein | - |
| O6760_RS32785 | 90427..90588 | - | 162 | WP_269586488.1 | hypothetical protein | - |
| O6760_RS32790 | 90768..91115 | + | 348 | WP_152508048.1 | hypothetical protein | - |
| O6760_RS32795 | 91480..91998 | - | 519 | WP_152508049.1 | helix-turn-helix transcriptional regulator | - |
| O6760_RS32800 | 92676..95645 | - | 2970 | WP_072495413.1 | Tn3 family transposase TnpA_ISAcsp1 | Transposase |
| O6760_RS32805 | 95661..96266 | - | 606 | WP_055971942.1 | Tn3 family transposase TnpR_ISMpo10 | Transposase |
| O6760_RS32810 | 96624..97127 | - | 504 | WP_077294877.1 | L,D-transpeptidase | - |
| O6760_RS32815 | 97777..99960 | + | 2184 | WP_077294820.1 | heavy metal translocating P-type ATPase | - |
| O6760_RS32820 | 100311..101063 | + | 753 | WP_062492085.1 | heparan-alpha-glucosaminide N-acetyltransferase | - |
| O6760_RS32825 | 101103..102083 | - | 981 | WP_209171781.1 | murein L,D-transpeptidase family protein | - |
| O6760_RS32830 | 102332..102916 | - | 585 | WP_082809966.1 | DedA family protein | - |
| O6760_RS32835 | 103458..104075 | + | 618 | WP_152508051.1 | transglutaminase-like cysteine peptidase | - |
| O6760_RS32840 | 104240..104983 | - | 744 | WP_269586483.1 | phosphonate ABC transporter, permease protein PhnE | - |
| O6760_RS32845 | 104983..105753 | - | 771 | WP_269586484.1 | Phosphate-import ATP-binding protein PhnC | VF |
| O6760_RS32850 | 105750..106607 | - | 858 | WP_269586485.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| O6760_RS32855 | 106607..108460 | - | 1854 | WP_269586486.1 | cytochrome c peroxidase | - |
| O6760_RS32860 | 108580..109035 | + | 456 | WP_040450248.1 | Transcriptional regulator MntR | VF |
| O6760_RS32865 | 109405..109794 | + | 390 | WP_269586487.1 | hypothetical protein | - |
| O6760_RS32870 | 109923..111041 | + | 1119 | WP_152508068.1 | IS110 family transposase ISMtsp6 | Transposase |
| O6760_RS32875 | 111358..111795 | + | 438 | WP_152508069.1 | IS66 family transposase IS66 | Transposase |
| O6760_RS32880 | 111792..112139 | + | 348 | WP_152508070.1 | IS66 family transposase IS66 | Transposase |
| O6760_RS32885 | 112236..113831 | + | 1596 | WP_228866888.1 | IS66 family transposase IS66 | Transposase |
| O6760_RS32890 | 113828..114472 | + | 645 | WP_152508072.1 | plasmid pRiA4b ORF-3 family protein | - |
| O6760_RS32895 | 114518..115018 | + | 501 | WP_209171743.1 | phosphatase PAP2 family protein | - |
| O6760_RS32900 | 115306..117309 | - | 2004 | WP_062492224.1 | hypothetical protein | VF |
| O6760_RS32905 | 117424..118077 | - | 654 | WP_062492099.1 | thioredoxin domain-containing protein | - |
| O6760_RS32910 | 118612..118938 | + | 327 | WP_077294808.1 | DUF1636 family protein | - |
| O6760_RS32915 | 118941..119465 | - | 525 | WP_062492102.1 | hypothetical protein | - |
| O6760_RS32920 | 119543..120007 | - | 465 | Protein_118 | CbtA family protein | - |
| O6760_RS32925 | 120067..120363 | - | 297 | WP_062492104.1 | conjugal transfer protein TrbD | - |
| O6760_RS32930 | 120356..120715 | - | 360 | WP_152508073.1 | TrbC/VirB2 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|