MGE detailed information
MGE type: Prophage MGE length: 65909 bp
Accession: NZ_CP113537 Location: 1962794..2028702 Organism: Salmonella enterica strain YZY Replicon: chromosome
Accession: NZ_CP113537 Location: 1962794..2028702 Organism: Salmonella enterica strain YZY Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXV04_RS09290 () | 1958532..1958984 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| OXV04_RS09295 () | 1959014..1959754 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| OXV04_RS09300 () | 1959791..1960312 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| OXV04_RS09305 () | 1960314..1960913 | - | 600 | WP_000716749.1 | YebB family permuted papain-like enzyme | - |
| OXV04_RS09310 () | 1961122..1961814 | + | 693 | WP_000227320.1 | hypothetical protein | - |
| OXV04_RS09315 () | 1962174..1962785 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| OXV04_RS09320 () | 1962794..1963804 | + | 1011 | WP_000568508.1 | hypothetical protein | VF |
| OXV04_RS09325 () | 1963883..1964668 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| OXV04_RS09330 () | 1964665..1965420 | - | 756 | WP_000203013.1 | hypothetical protein | VF |
| OXV04_RS09335 () | 1965499..1966443 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| OXV04_RS09340 () | 1966459..1967778 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| OXV04_RS09345 () | 1967895..1968866 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| OXV04_RS09350 () | 1968939..1970381 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| OXV04_RS09355 () | 1970505..1971374 | - | 870 | WP_020898861.1 | MurR/RpiR family transcriptional regulator | - |
| OXV04_RS09360 () | 1971716..1973191 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| OXV04_RS09365 () | 1973426..1975237 | + | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| OXV04_RS09370 () | 1975275..1975916 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| OXV04_RS09375 () | 1976016..1977194 | - | 1179 | WP_000173428.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| OXV04_RS09380 () | 1977325..1977615 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| OXV04_RS09385 () | 1977683..1978036 | + | 354 | WP_001042119.1 | protein YebF | - |
| OXV04_RS09390 () | 1978130..1978789 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| OXV04_RS09395 () | 1979002..1981053 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| OXV04_RS09400 () | 1981090..1981788 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| OXV04_RS09405 () | 1981812..1982468 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| OXV04_RS09410 () | 1982576..1982806 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| OXV04_RS09415 () | 1982944..1983318 | + | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| OXV04_RS09420 () | 1983319..1984194 | + | 876 | WP_000979699.1 | copper homeostasis membrane protein CopD | - |
| OXV04_RS09425 () | 1984211..1984564 | + | 354 | WP_126524015.1 | YebY family protein | - |
| - | 1984666..1984809 | - | 144 | - | - | Antitoxin Detail |
| - | 1984704..1984807 | + | 104 | - | - | Toxin Detail |
| OXV04_RS09430 () | 1984938..1985588 | - | 651 | Protein_1841 | hypothetical protein ; Integrase | Integrase |
| OXV04_RS09435 () | 1985599..1985904 | + | 306 | WP_206519696.1 | hypothetical protein | - |
| OXV04_RS09440 () | 1985861..1986064 | + | 204 | Protein_1843 | phage tail protein | - |
| OXV04_RS09445 () | 1986236..1986391 | + | 156 | Protein_1844 | phage tail protein | - |
| OXV04_RS09450 () | 1986497..1986829 | + | 333 | WP_061383450.1 | DUF1353 domain-containing protein | - |
| OXV04_RS09455 () | 1986878..1986987 | + | 110 | Protein_1846 | tail fiber assembly protein | - |
| OXV04_RS09460 () | 1987515..1987703 | - | 189 | Protein_1847 | tail fiber assembly protein | - |
| OXV04_RS09465 () | 1987699..1988469 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| OXV04_RS09470 () | 1988539..1988637 | + | 99 | Protein_1849 | DUF4113 domain-containing protein | - |
| OXV04_RS09475 () | 1988960..1989088 | + | 129 | Protein_1850 | helix-turn-helix domain-containing protein | - |
| OXV04_RS09480 () | 1989117..1989917 | - | 801 | WP_079944157.1 | hypothetical protein | - |
| OXV04_RS09485 () | 1990857..1991165 | - | 309 | Protein_1852 | hypothetical protein ; Integrase | Integrase |
| OXV04_RS09490 () | 1991164..1991528 | - | 365 | Protein_1853 | recombinase RecT | - |
| OXV04_RS09495 () | 1991525..1991635 | + | 111 | Protein_1854 | replication protein | - |
| OXV04_RS09500 () | 1991650..1992045 | + | 396 | WP_024798200.1 | DUF977 family protein | - |
| OXV04_RS09505 () | 1992332..1993462 | - | 1131 | WP_126524016.1 | GGDEF domain-containing protein | - |
| OXV04_RS09510 () | 1993858..1995837 | + | 1980 | WP_024798201.1 | alkyl sulfatase dimerization domain-containing protein | - |
| OXV04_RS09515 () | 1996246..1996860 | - | 615 | WP_126524017.1 | disulfide bond formation protein B | - |
| OXV04_RS09520 () | 1996870..1997028 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| OXV04_RS09525 () | 1997161..1998075 | - | 915 | WP_001233453.1 | DMT family transporter | - |
| OXV04_RS09530 () | 1999331..1999744 | - | 414 | WP_080094825.1 | hypothetical protein ; Integrase | Integrase |
| OXV04_RS09535 () | 1999868..2001076 | + | 1209 | Protein_1862 | IS256 family transposase ISEc39 | Transposase |
| OXV04_RS09540 () | 2001222..2001362 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| OXV04_RS09545 () | 2001531..2001797 | - | 267 | WP_077248438.1 | hypothetical protein | - |
| OXV04_RS09550 () | 2002167..2002586 | + | 420 | WP_000354410.1 | GNAT family N-acetyltransferase | - |
| OXV04_RS09555 () | 2002822..2002980 | - | 159 | WP_072274730.1 | lipopolysaccharide 1,2-N-acetylglucosaminetransferase | - |
| OXV04_RS09560 () | 2003004..2003252 | + | 249 | Protein_1867 | glycosyltransferase | - |
| OXV04_RS09565 () | 2003297..2003824 | - | 528 | WP_167760988.1 | hypothetical protein | - |
| OXV04_RS09570 () | 2004802..2005540 | - | 739 | Protein_1869 | hypothetical protein ; Integrase | Integrase |
| OXV04_RS09575 () | 2005659..2006672 | - | 1014 | WP_071991613.1 | acyltransferase family protein | - |
| OXV04_RS09580 () | 2007369..2007572 | - | 204 | WP_024798203.1 | hypothetical protein | VF |
| OXV04_RS09585 () | 2007756..2008001 | - | 246 | WP_001051755.1 | hypothetical protein | - |
| OXV04_RS09590 () | 2009630..2010106 | - | 477 | WP_063809171.1 | hypothetical protein | - |
| OXV04_RS09595 () | 2010435..2010830 | - | 396 | WP_063809172.1 | DUF1398 domain-containing protein | - |
| OXV04_RS09600 () | 2011514..2012236 | + | 723 | WP_126524018.1 | hypothetical protein | VF |
| OXV04_RS09605 () | 2012521..2012685 | + | 165 | WP_001134853.1 | hypothetical protein | - |
| OXV04_RS09610 () | 2012909..2013559 | + | 651 | WP_023226864.1 | protein-serine/threonine phosphatase | - |
| OXV04_RS09615 () | 2013578..2013769 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| OXV04_RS09620 () | 2013880..2014116 | - | 237 | WP_024131167.1 | YebV family protein | - |
| OXV04_RS09625 () | 2014234..2015673 | - | 1440 | WP_126524019.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OXV04_RS09630 () | 2015751..2018384 | - | 2634 | WP_001747692.1 | hypothetical protein | VF |
| OXV04_RS09635 () | 2018353..2019636 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| OXV04_RS09640 () | 2019765..2020262 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| OXV04_RS09645 () | 2020360..2021046 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| OXV04_RS09650 () | 2021066..2023114 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| OXV04_RS09655 () | 2023308..2024189 | + | 882 | WP_000984498.1 | protease HtpX | - |
| OXV04_RS09660 () | 2024237..2025610 | - | 1374 | WP_000416139.1 | MFS transporter | - |
| OXV04_RS09665 () | 2025787..2026578 | + | 792 | WP_001262197.1 | DNA-binding transcriptional regulator KdgR | - |
| OXV04_RS09670 () | 2026790..2027029 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| OXV04_RS09675 () | 2027187..2027330 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| OXV04_RS09680 () | 2027401..2027688 | + | 288 | WP_001000660.1 | YebO family protein | - |
| OXV04_RS09685 () | 2028337..2028480 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| OXV04_RS09690 () | 2028493..2028702 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| OXV04_RS09695 () | 2028922..2030667 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| OXV04_RS09700 () | 2030733..2031542 | + | 810 | WP_000010924.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| OXV04_RS09705 () | 2031539..2032105 | - | 567 | WP_126524021.1 | manganese efflux pump MntP | - |
| OXV04_RS09710 () | 2032515..2032973 | - | 459 | WP_126524022.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|