MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 93725 bp
Accession: NZ_CP111030 Location: 5074563..5168287 Organism: Pseudomonas aeruginosa strain PALA38 Replicon: chromosome
Accession: NZ_CP111030 Location: 5074563..5168287 Organism: Pseudomonas aeruginosa strain PALA38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA38_RS23695 (PALA38_04685) | 5070073..5070345 | + | 273 | WP_073656953.1 | cysteine-rich CWC family protein | - |
| PALA38_RS23700 (PALA38_04686) | 5070345..5071037 | + | 693 | WP_022579823.1 | 16S rRNA pseudouridine(516) synthase | - |
| PALA38_RS23705 (PALA38_04687) | 5071173..5072216 | + | 1044 | WP_003110811.1 | L,D-transpeptidase | - |
| PALA38_RS23710 (PALA38_04688) | 5072296..5073033 | + | 738 | WP_003085453.1 | murein L,D-transpeptidase catalytic domain family protein | - |
| PALA38_RS23715 (PALA38_04689) | 5073485..5074387 | + | 903 | WP_003085447.1 | (R)-3-hydroxydecanoyl-ACP:CoA transacylase | - |
| PALA38_RS23725 (PALA38_04691) | 5074830..5076686 | + | 1857 | WP_112778079.1 | hypothetical protein ; Integrase | Integrase |
| PALA38_RS23730 (PALA38_04692) | 5076719..5077180 | - | 462 | Protein_4698 | LysR substrate-binding domain-containing protein | - |
| PALA38_RS23735 (PALA38_04693) | 5077302..5078828 | + | 1527 | WP_074923754.1 | IS21 family transposase ISJsp3 | Transposase |
| PALA38_RS23740 (PALA38_04694) | 5078821..5079606 | + | 786 | WP_074923749.1 | IS21 family transposase ISCARN16 | Transposase |
| PALA38_RS23745 (PALA38_04695) | 5080043..5081695 | + | 1653 | WP_096229640.1 | Methyl-accepting chemotaxis protein 4 | VF |
| PALA38_RS23750 (PALA38_04696) | 5081909..5082055 | + | 147 | Protein_4702 | IS21 family transposase ISCARN16 | Transposase |
| PALA38_RS23755 | 5082308..5082418 | - | 111 | Protein_4703 | LysR family transcriptional regulator | - |
| PALA38_RS23760 | 5082523..5082828 | + | 306 | WP_003454714.1 | helix-turn-helix transcriptional regulator | - |
| PALA38_RS23765 (PALA38_04697) | 5082855..5084702 | - | 1848 | WP_031329115.1 | MobH family relaxase | - |
| PALA38_RS23770 (PALA38_04698) | 5085016..5085333 | + | 318 | WP_003454724.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| PALA38_RS23775 (PALA38_04699) | 5085333..5085797 | + | 465 | WP_003454727.1 | type II toxin-antitoxin system YhaV family toxin | - |
| PALA38_RS23780 (PALA38_04700) | 5085884..5086255 | + | 372 | WP_003454730.1 | DUF3742 family protein | - |
| PALA38_RS23785 (PALA38_04701) | 5086261..5087778 | - | 1518 | WP_003454733.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PALA38_RS23790 (PALA38_04702) | 5087794..5088147 | - | 354 | WP_096068855.1 | hypothetical protein | - |
| PALA38_RS23795 (PALA38_04703) | 5088144..5089547 | - | 1404 | WP_003454739.1 | integrating conjugative element protein | - |
| PALA38_RS23800 (PALA38_04704) | 5089557..5090507 | - | 951 | WP_096068856.1 | TIGR03756 family integrating conjugative element protein | - |
| PALA38_RS23805 (PALA38_04705) | 5090504..5090950 | - | 447 | WP_003454745.1 | TIGR03757 family integrating conjugative element protein | - |
| PALA38_RS23810 (PALA38_04706) | 5091107..5091601 | - | 495 | WP_003454748.1 | DNA repair protein RadC | - |
| PALA38_RS23815 (PALA38_04707) | 5091795..5092541 | - | 747 | WP_003454752.1 | thioredoxin domain-containing protein | - |
| PALA38_RS23820 (PALA38_04708) | 5092555..5095449 | - | 2895 | WP_269973127.1 | conjugative transfer ATPase | - |
| PALA38_RS23825 (PALA38_04709) | 5095449..5095883 | - | 435 | WP_033873709.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| PALA38_RS23830 (PALA38_04710) | 5095864..5097330 | - | 1467 | WP_112778078.1 | TIGR03752 family integrating conjugative element protein | - |
| PALA38_RS23835 (PALA38_04711) | 5097320..5098228 | - | 909 | WP_031329112.1 | TIGR03749 family integrating conjugative element protein | - |
| PALA38_RS23840 (PALA38_04712) | 5098237..5098929 | - | 693 | WP_003454780.1 | TIGR03746 family integrating conjugative element protein | - |
| PALA38_RS23845 (PALA38_04713) | 5098926..5099354 | - | 429 | WP_116850179.1 | TIGR03750 family conjugal transfer protein | - |
| PALA38_RS23850 (PALA38_04714) | 5099367..5099744 | - | 378 | WP_003454787.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| PALA38_RS23855 (PALA38_04715) | 5099766..5100005 | - | 240 | WP_003454790.1 | TIGR03758 family integrating conjugative element protein | - |
| PALA38_RS23860 (PALA38_04716) | 5100002..5100409 | - | 408 | WP_003454792.1 | RAQPRD family integrative conjugative element protein | - |
| PALA38_RS23865 | 5100615..5101091 | - | 477 | WP_003454794.1 | Mov34/MPN/PAD-1 family protein | - |
| PALA38_RS23870 (PALA38_04717) | 5101079..5102707 | - | 1629 | WP_003454796.1 | ThiF family adenylyltransferase | - |
| PALA38_RS23875 (PALA38_04718) | 5102704..5103846 | - | 1143 | WP_112778076.1 | hypothetical protein | - |
| PALA38_RS23880 (PALA38_04719) | 5103840..5104841 | - | 1002 | WP_003454800.1 | CBASS cGAMP-activated phospholipase | - |
| PALA38_RS23885 (PALA38_04720) | 5104847..5105071 | - | 225 | WP_003454802.1 | DUF2188 domain-containing protein | - |
| PALA38_RS23890 (PALA38_04721) | 5105348..5105734 | + | 387 | WP_003454804.1 | helix-turn-helix transcriptional regulator | - |
| PALA38_RS23895 (PALA38_04722) | 5105737..5106606 | + | 870 | WP_003454806.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PALA38_RS23900 (PALA38_04723) | 5106742..5107491 | - | 750 | WP_004265580.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| PALA38_RS23905 (PALA38_04724) | 5107488..5109647 | - | 2160 | WP_112778075.1 | type IV conjugative transfer system coupling protein TraD | - |
| PALA38_RS23910 (PALA38_04725) | 5109668..5110210 | - | 543 | WP_233437707.1 | integrating conjugative element protein | - |
| PALA38_RS23915 (PALA38_04726) | 5110231..5110830 | - | 600 | WP_033873711.1 | hypothetical protein | VF |
| PALA38_RS23920 (PALA38_04727) | 5110815..5111546 | - | 732 | WP_162501123.1 | TIGR03759 family integrating conjugative element protein | - |
| PALA38_RS23925 (PALA38_04728) | 5111556..5112200 | - | 645 | WP_003454833.1 | hypothetical protein | - |
| PALA38_RS23930 (PALA38_04729) | 5112197..5112808 | - | 612 | WP_112778072.1 | hypothetical protein | VF |
| PALA38_RS23935 (PALA38_04730) | 5112969..5115251 | - | 2283 | WP_059889455.1 | helicase-related protein | - |
| PALA38_RS23940 (PALA38_04731) | 5115384..5116502 | - | 1119 | WP_112778071.1 | DUF6094 domain-containing protein | - |
| PALA38_RS23945 (PALA38_04732) | 5116570..5117226 | - | 657 | WP_003454850.1 | hypothetical protein | - |
| PALA38_RS23950 (PALA38_04733) | 5117728..5118555 | - | 828 | WP_003454853.1 | DUF932 domain-containing protein | - |
| PALA38_RS23955 (PALA38_04734) | 5118693..5118962 | - | 270 | WP_003454871.1 | hypothetical protein | - |
| PALA38_RS23960 (PALA38_04735) | 5118970..5119362 | - | 393 | WP_003454873.1 | hypothetical protein | - |
| PALA38_RS23965 (PALA38_04736) | 5119464..5120093 | - | 630 | WP_003454876.1 | DUF3275 family protein | - |
| PALA38_RS23970 (PALA38_04737) | 5120205..5120768 | - | 564 | WP_112778069.1 | STY4534 family ICE replication protein | - |
| PALA38_RS23975 (PALA38_04738) | 5121073..5121411 | - | 339 | Protein_4747 | Nin-like protein | - |
| PALA38_RS23980 (PALA38_04739) | 5121555..5121920 | - | 366 | WP_003454886.1 | DUF3085 domain-containing protein | - |
| PALA38_RS23985 (PALA38_04740) | 5121996..5122793 | - | 798 | WP_003454887.1 | hypothetical protein | - |
| PALA38_RS23990 (PALA38_04741) | 5123086..5123802 | - | 717 | WP_128655681.1 | ABC transporter substrate-binding protein | - |
| PALA38_RS23995 (PALA38_04742) | 5123883..5124347 | - | 465 | WP_003454889.1 | hypothetical protein | - |
| PALA38_RS24000 (PALA38_04743) | 5124451..5124843 | - | 393 | WP_003454890.1 | hypothetical protein | - |
| PALA38_RS24005 (PALA38_04744) | 5124869..5125120 | - | 252 | WP_003454891.1 | hypothetical protein | - |
| PALA38_RS24010 (PALA38_04745) | 5125928..5127964 | - | 2037 | WP_112778068.1 | DNA topoisomerase III | - |
| PALA38_RS24015 (PALA38_04746) | 5128242..5128691 | - | 450 | WP_003454893.1 | single-stranded DNA-binding protein | - |
| PALA38_RS24020 (PALA38_04747) | 5128688..5129239 | - | 552 | WP_003454894.1 | DUF3158 family protein | - |
| PALA38_RS24025 (PALA38_04748) | 5129236..5130015 | - | 780 | WP_112778067.1 | TIGR03761 family integrating conjugative element protein | - |
| PALA38_RS24030 (PALA38_04749) | 5130245..5131495 | - | 1251 | WP_059889447.1 | STY4528 family pathogenicity island replication protein | - |
| PALA38_RS24035 (PALA38_04750) | 5131499..5132059 | - | 561 | WP_003454899.1 | DUF2857 domain-containing protein | - |
| PALA38_RS24040 (PALA38_04751) | 5132072..5133733 | - | 1662 | WP_003454909.1 | ParB family protein | - |
| PALA38_RS24045 (PALA38_04752) | 5133726..5133983 | - | 258 | WP_003454921.1 | hypothetical protein | - |
| PALA38_RS24050 (PALA38_04753) | 5133967..5134833 | - | 867 | WP_003454923.1 | Sporulation initiation inhibitor protein Soj | VF |
| PALA38_RS24055 (PALA38_04754) | 5134874..5135092 | - | 219 | WP_003454927.1 | AlpA family transcriptional regulator | - |
| PALA38_RS24060 (PALA38_04755) | 5135234..5135992 | - | 759 | WP_003454930.1 | hypothetical protein | - |
| PALA38_RS24065 (PALA38_04756) | 5136532..5137440 | - | 909 | WP_012761385.1 | Hca operon transcriptional activator HcaR | VF |
| PALA38_RS24070 | 5137541..5138009 | + | 469 | Protein_4766 | IS66 family transposase | - |
| PALA38_RS24075 | 5138145..5138405 | - | 261 | WP_128655684.1 | transposase | - |
| PALA38_RS24080 | 5138689..5138970 | + | 282 | WP_006215887.1 | helix-turn-helix domain-containing protein | - |
| PALA38_RS24085 (PALA38_04759) | 5139006..5139575 | + | 570 | WP_024973321.1 | hypothetical protein | VF |
| PALA38_RS24090 (PALA38_04760) | 5139669..5142518 | + | 2850 | WP_112778062.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| PALA38_RS24095 (PALA38_04761) | 5142535..5143965 | + | 1431 | WP_112778061.1 | cardiolipin synthase | - |
| PALA38_RS24100 (PALA38_04762) | 5143993..5145822 | + | 1830 | WP_112778060.1 | ATP-dependent zinc metalloprotease FtsH 4 | VF |
| PALA38_RS24105 (PALA38_04763) | 5145901..5146359 | + | 459 | WP_112778059.1 | Spore protein SP21 | VF |
| PALA38_RS24110 (PALA38_04764) | 5146382..5147296 | + | 915 | WP_112778058.1 | heat resistance protein YfdX1 | - |
| PALA38_RS24115 (PALA38_04765) | 5147399..5148286 | + | 888 | WP_116850178.1 | heat resistance protein YfdX2 | - |
| PALA38_RS24120 (PALA38_04766) | 5148383..5148994 | + | 612 | WP_111197259.1 | heat resistance membrane protein HdeD-GI | - |
| PALA38_RS24125 (PALA38_04767) | 5149074..5150219 | + | 1146 | WP_112778056.1 | hypothetical protein | - |
| PALA38_RS24130 (PALA38_04768) | 5150209..5150649 | + | 441 | WP_012761376.1 | heat resistance system thioredoxin Trx-GI | - |
| PALA38_RS24135 (PALA38_04769) | 5150653..5152368 | + | 1716 | WP_112778055.1 | heat resistance system K+/H+ antiporter KefB-GI | - |
| PALA38_RS24140 (PALA38_04770) | 5152365..5152862 | + | 498 | WP_116850177.1 | heat resistance protein PsiE-GI | - |
| PALA38_RS24145 (PALA38_04771) | 5152840..5153805 | + | 966 | WP_112778053.1 | zinc metalloprotease HtpX | - |
| PALA38_RS24150 (PALA38_04772) | 5153830..5154981 | + | 1152 | WP_004265443.1 | hypothetical protein | VF |
| PALA38_RS24155 (PALA38_04773) | 5155214..5156122 | + | 909 | WP_003141085.1 | LysR family transcriptional regulator | - |
| PALA38_RS24160 (PALA38_04774) | 5156432..5156779 | - | 348 | WP_019486378.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PALA38_RS24165 | 5156789..5157040 | - | 252 | WP_003114155.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PALA38_RS24170 (PALA38_04775) | 5157254..5158237 | - | 984 | WP_003114154.1 | IS91 family transposase ISCARN110 | Transposase |
| PALA38_RS24175 (PALA38_04776) | 5158237..5159529 | - | 1293 | WP_003115206.1 | hypothetical protein | - |
| PALA38_RS24180 (PALA38_04778) | 5159759..5161042 | - | 1284 | WP_023124144.1 | hypothetical protein | VF |
| PALA38_RS24185 (PALA38_04779) | 5161046..5161402 | - | 357 | WP_003114150.1 | DUF2523 family protein | - |
| PALA38_RS24190 (PALA38_04780) | 5161407..5162753 | - | 1347 | WP_052151017.1 | hypothetical protein | - |
| PALA38_RS24195 (PALA38_04781) | 5162907..5163155 | - | 249 | WP_003140506.1 | major capsid protein | - |
| PALA38_RS24200 (PALA38_04782) | 5163168..5163419 | - | 252 | WP_003115979.1 | hypothetical protein | - |
| PALA38_RS24205 (PALA38_04784) | 5163541..5163975 | - | 435 | WP_003151275.1 | hypothetical protein | - |
| PALA38_RS24210 (PALA38_04785) | 5164491..5164781 | - | 291 | WP_023083237.1 | DUF5447 family protein | - |
| PALA38_RS24215 (PALA38_04786) | 5164785..5164997 | - | 213 | WP_003112698.1 | hypothetical protein | - |
| PALA38_RS24220 (PALA38_04787) | 5164999..5165214 | - | 216 | WP_022579882.1 | hypothetical protein | - |
| PALA38_RS24225 | 5165326..5165598 | + | 273 | WP_071534339.1 | DNA-binding protein | - |
| PALA38_RS24230 | 5165653..5166015 | + | 363 | WP_124204525.1 | hypothetical protein | - |
| PALA38_RS24235 (PALA38_04788) | 5166118..5166882 | + | 765 | WP_071534340.1 | FRG domain-containing protein | - |
| PALA38_RS24240 (PALA38_04789) | 5166885..5167937 | + | 1053 | WP_071534341.1 | DUF262 domain-containing protein | - |
| PALA38_RS24245 (PALA38_04790) | 5168424..5168900 | - | 477 | WP_003085438.1 | hypothetical protein | - |
| PALA38_RS24250 (PALA38_04791) | 5169132..5169425 | - | 294 | WP_003085435.1 | DUF2845 domain-containing protein | - |
| PALA38_RS24255 (PALA38_04792) | 5169765..5170022 | + | 258 | WP_003085431.1 | YjhX family toxin | - |
| PALA38_RS24260 (PALA38_04793) | 5170082..5170588 | + | 507 | WP_031756466.1 | N-acetyltransferase | - |
| PALA38_RS24265 (PALA38_04794) | 5170632..5171027 | - | 396 | WP_003098430.1 | lactoylglutathione lyase | - |
| PALA38_RS24270 (PALA38_04795) | 5171072..5171368 | - | 297 | WP_003085421.1 | putative quinol monooxygenase | - |
| PALA38_RS24275 (PALA38_04796) | 5171483..5172337 | + | 855 | WP_033995212.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|