MGE detailed information
MGE type: Genomic_island MGE length: 12810 bp
Accession: NZ_CP110999 Location: 2149985..2162794 Organism: Escherichia coli strain J53-p133 Replicon: chromosome
Accession: NZ_CP110999 Location: 2149985..2162794 Organism: Escherichia coli strain J53-p133 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI88_RS10525 (2149985) | 2149985..2150251 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| ORI88_RS10530 (2150251) | 2150251..2151573 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| ORI88_RS10535 (2151885) | 2151885..2152093 | + | 209 | Protein_2058 | AraC family transcriptional regulator | - |
| ORI88_RS10540 (2152348) | 2152348..2153574 | + | 1227 | Protein_2059 | Outer membrane usher protein FimD | VF |
| ORI88_RS10545 (2153588) | 2153588..2154118 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| ORI88_RS10550 (2154131) | 2154131..2154634 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| ORI88_RS10555 (2154693) | 2154693..2155607 | + | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| ORI88_RS10560 (2155941) | 2155941..2158220 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| ORI88_RS10565 (2158468) | 2158468..2158665 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| ORI88_RS10570 (2158740) | 2158740..2159501 | + | 762 | WP_000060495.1 | acid stress response transcriptional regulator YdeO | - |
| ORI88_RS10575 (2159903) | 2159903..2161585 | + | 1683 | WP_001295684.1 | sulfatase | - |
| ORI88_RS10580 (2161637) | 2161637..2162794 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| ORI88_RS10585 (2162760) | 2162760..2162882 | - | 123 | WP_120795387.1 | protein YneP | - |
| ORI88_RS10590 (2163085) | 2163085..2164770 | + | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| ORI88_RS10595 (2164808) | 2164808..2167180 | + | 2373 | WP_000832437.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.003 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.003 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.003 |