MGE detailed information
MGE type: Prophage MGE length: 61680 bp
Accession: NZ_CP110934 Location: 2576983..2638662 Organism: Salmonella enterica strain CVCC 519 Replicon: chromosome
Accession: NZ_CP110934 Location: 2576983..2638662 Organism: Salmonella enterica strain CVCC 519 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORG43_RS12655 (2572210) | 2572210..2573844 | - | 1635 | WP_023234893.1 | ABC transporter substrate-binding protein | - |
| ORG43_RS12660 (2574526) | 2574526..2574840 | + | 315 | WP_000182479.1 | TRL-like family protein | - |
| ORG43_RS12665 (2574989) | 2574989..2575516 | + | 528 | WP_038393981.1 | cytochrome b | - |
| ORG43_RS12670 (2575601) | 2575601..2576644 | - | 1044 | WP_000780157.1 | exo-alpha-sialidase | - |
| ORG43_RS12675 (2576983) | 2576983..2577450 | - | 468 | WP_023234892.1 | Hsp20 family protein | - |
| ORG43_RS12680 (2577651) | 2577651..2577874 | - | 224 | Protein_2483 | hypothetical protein | - |
| ORG43_RS12685 (2578577) | 2578577..2578921 | + | 345 | WP_000977722.1 | c-type lysozyme inhibitor | - |
| ORG43_RS12695 (2580143) | 2580143..2580700 | - | 558 | WP_000789471.1 | Attachment invasion locus protein | VF |
| ORG43_RS12700 (2581512) | 2581512..2581775 | + | 264 | WP_012664625.1 | virulence protein PagD | - |
| ORG43_RS12705 (2581907) | 2581907..2582119 | + | 213 | WP_001539813.1 | cold shock-like protein CspF | - |
| ORG43_RS12710 (2582534) | 2582534..2583055 | + | 522 | WP_001532066.1 | RICIN domain-containing protein | - |
| ORG43_RS12715 (2583246) | 2583246..2583485 | + | 240 | WP_000497451.1 | virulence protein MsgA | - |
| ORG43_RS12720 (2583975) | 2583975..2584763 | + | 789 | WP_001033398.1 | hypothetical protein | - |
| ORG43_RS12725 (2585750) | 2585750..2586873 | - | 1124 | Protein_2491 | type III secretion system effector SopF | - |
| ORG43_RS12730 (2587321) | 2587321..2587491 | - | 171 | Protein_2492 | isocitrate/isopropylmalate family dehydrogenase | - |
| ORG43_RS12735 (2587640) | 2587640..2587981 | + | 342 | WP_023234889.1 | hypothetical protein | - |
| ORG43_RS12740 (2588205) | 2588205..2588381 | - | 177 | Protein_2494 | IS4/IS5 family transposase | - |
| ORG43_RS12745 (2588627) | 2588627..2589694 | + | 1068 | WP_223557578.1 | LD-carboxypeptidase | - |
| ORG43_RS12750 (2589985) | 2589985..2591601 | + | 1617 | WP_023234888.1 | peptide ABC transporter substrate-binding protein | - |
| ORG43_RS12755 (2591888) | 2591888..2592031 | - | 144 | Protein_2497 | integrase core domain-containing protein | - |
| ORG43_RS12760 (2592338) | 2592338..2592631 | - | 294 | WP_001539801.1 | Bro-N domain-containing protein | - |
| ORG43_RS12765 (2592617) | 2592617..2593666 | + | 1050 | WP_187148224.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| ORG43_RS12770 (2593797) | 2593797..2594105 | - | 309 | WP_001539798.1 | hypothetical protein | - |
| ORG43_RS12775 (2594108) | 2594108..2594347 | - | 240 | WP_023228861.1 | hypothetical protein | - |
| ORG43_RS12780 (2594405) | 2594405..2594557 | - | 153 | Protein_2502 | helix-turn-helix domain-containing protein | - |
| ORG43_RS12785 (2595204) | 2595204..2595722 | - | 519 | WP_023234886.1 | tail fiber assembly protein | - |
| ORG43_RS12790 (2595737) | 2595737..2598415 | - | 2679 | WP_038393980.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ORG43_RS12795 (2598469) | 2598469..2598705 | - | 237 | WP_001617893.1 | hypothetical protein | - |
| ORG43_RS12800 (2598750) | 2598750..2602112 | - | 3363 | WP_023234884.1 | host specificity protein J | - |
| ORG43_RS12805 (2602175) | 2602175..2602822 | - | 648 | WP_023236538.1 | tail assembly protein | - |
| ORG43_RS12810 (2602720) | 2602720..2603457 | - | 738 | WP_000662740.1 | C40 family peptidase | - |
| ORG43_RS12815 (2603464) | 2603464..2604162 | - | 699 | WP_001539790.1 | phage minor tail protein L | - |
| ORG43_RS12820 (2604172) | 2604172..2604501 | - | 330 | WP_000447370.1 | phage tail protein | - |
| ORG43_RS12825 (2604504) | 2604504..2607545 | - | 3042 | WP_001539789.1 | phage tail tape measure protein | - |
| ORG43_RS12830 (2607517) | 2607517..2607855 | - | 339 | WP_077905885.1 | phage tail assembly protein T | - |
| ORG43_RS12835 (2607852) | 2607852..2608247 | - | 396 | WP_000479607.1 | phage minor tail protein G | - |
| ORG43_RS12840 (2608298) | 2608298..2609044 | - | 747 | WP_000971954.1 | phage tail tube protein | - |
| ORG43_RS12845 (2609052) | 2609052..2609453 | - | 402 | WP_000033885.1 | phage minor tail U family protein | - |
| ORG43_RS12850 (2609450) | 2609450..2610028 | - | 579 | WP_000677089.1 | phage tail protein | - |
| ORG43_RS12855 (2610134) | 2610134..2611264 | + | 1131 | WP_001539782.1 | IS200-IS605 family transposase ISEc42 | Transposase |
| ORG43_RS12860 (2611297) | 2611297..2611680 | - | 384 | WP_001539781.1 | head-tail joining protein | - |
| ORG43_RS12865 (2611691) | 2611691..2612050 | - | 360 | WP_001539780.1 | DNA-packaging protein FI | - |
| ORG43_RS12870 (2612108) | 2612108..2613136 | - | 1029 | WP_000522566.1 | major capsid protein | - |
| ORG43_RS12875 (2613191) | 2613191..2613538 | - | 348 | WP_001539777.1 | head decoration protein | - |
| ORG43_RS12880 (2613551) | 2613551..2615047 | - | 1497 | WP_006669512.1 | S49 family peptidase | - |
| ORG43_RS12885 (2615037) | 2615037..2616617 | - | 1581 | WP_000831820.1 | phage portal protein | - |
| ORG43_RS12890 (2616614) | 2616614..2616817 | - | 204 | WP_000201415.1 | gpW family protein | - |
| ORG43_RS12895 (2616801) | 2616801..2618732 | - | 1932 | WP_001539769.1 | phage terminase large subunit family protein | - |
| ORG43_RS12900 (2618704) | 2618704..2619249 | - | 546 | WP_001102154.1 | terminase small subunit | - |
| ORG43_RS12905 (2619508) | 2619508..2620011 | - | 504 | WP_023234883.1 | hypothetical protein | - |
| ORG43_RS12910 (2620114) | 2620114..2620656 | - | 543 | WP_001539764.1 | DUF2514 family protein | - |
| ORG43_RS12915 (2620653) | 2620653..2621267 | - | 615 | WP_001539762.1 | glycoside hydrolase family 19 protein | - |
| ORG43_RS12920 (2621267) | 2621267..2621548 | - | 282 | WP_000226307.1 | phage holin family protein | - |
| ORG43_RS12925 (2621535) | 2621535..2621924 | - | 390 | WP_001294873.1 | phage holin family protein | - |
| ORG43_RS12930 (2622034) | 2622034..2622378 | - | 345 | Protein_2532 | site-specific DNA-methyltransferase | - |
| ORG43_RS12935 (2622425) | 2622425..2622844 | - | 420 | WP_001539755.1 | hypothetical protein | - |
| ORG43_RS12940 (2623070) | 2623070..2623648 | - | 579 | WP_001539753.1 | DUF1133 family protein | - |
| ORG43_RS12945 (2623663) | 2623663..2624652 | - | 990 | WP_001539752.1 | DUF968 domain-containing protein | - |
| ORG43_RS12950 (2624660) | 2624660..2625520 | - | 861 | WP_001539751.1 | KilA-N domain-containing protein | - |
| ORG43_RS12955 (2625537) | 2625537..2625926 | - | 390 | WP_001539749.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ORG43_RS12960 (2625923) | 2625923..2626576 | - | 654 | WP_001539748.1 | phage N-6-adenine-methyltransferase | - |
| ORG43_RS12965 (2626576) | 2626576..2627058 | - | 483 | WP_023234881.1 | PerC family transcriptional regulator | - |
| ORG43_RS12970 (2627060) | 2627060..2627878 | - | 819 | WP_001539747.1 | helix-turn-helix domain-containing protein | - |
| ORG43_RS12975 (2627875) | 2627875..2628099 | - | 225 | WP_000620702.1 | hypothetical protein | - |
| ORG43_RS12980 (2628096) | 2628096..2628833 | - | 738 | Protein_2542 | Rha family transcriptional regulator | - |
| ORG43_RS12985 (2628957) | 2628957..2629586 | - | 630 | Protein_2543 | Rha family transcriptional regulator | - |
| ORG43_RS12990 (2629710) | 2629710..2629940 | + | 231 | WP_108429764.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ORG43_RS12995 (2629930) | 2629930..2630238 | + | 309 | WP_000147078.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| ORG43_RS13000 (2630257) | 2630257..2630433 | - | 177 | WP_001525520.1 | DUF4222 domain-containing protein | - |
| ORG43_RS13005 (2630573) | 2630573..2631127 | - | 555 | WP_000509731.1 | YmfL family putative regulatory protein | - |
| ORG43_RS13010 (2631156) | 2631156..2631380 | - | 225 | WP_001191666.1 | helix-turn-helix transcriptional regulator | - |
| ORG43_RS13015 (2631478) | 2631478..2632173 | + | 696 | WP_001020640.1 | helix-turn-helix transcriptional regulator | - |
| ORG43_RS13020 (2632508) | 2632508..2632705 | - | 198 | WP_001624554.1 | hypothetical protein | - |
| ORG43_RS13025 (2633263) | 2633263..2633619 | + | 357 | WP_001539742.1 | hypothetical protein | - |
| ORG43_RS13030 (2633677) | 2633677..2634504 | + | 828 | WP_023234876.1 | DUF2303 family protein | - |
| ORG43_RS13035 (2634641) | 2634641..2634799 | + | 159 | WP_000008355.1 | hypothetical protein | - |
| ORG43_RS13040 (2634868) | 2634868..2635113 | + | 246 | WP_000939947.1 | excisionase | - |
| ORG43_RS13045 (2635094) | 2635094..2636221 | + | 1128 | WP_001539740.1 | hypothetical protein ; Integrase | Integrase |
| ORG43_RS13050 (2636333) | 2636333..2637583 | - | 1251 | WP_023234874.1 | NADP-dependent isocitrate dehydrogenase | - |
| ORG43_RS13055 (2637755) | 2637755..2638336 | + | 582 | WP_023234873.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| ORG43_RS13060 (2638333) | 2638333..2638662 | + | 330 | WP_000825957.1 | lysozyme inhibitor LprI family protein | - |
| ORG43_RS13065 (2638674) | 2638674..2639135 | + | 462 | WP_000476069.1 | NUDIX hydrolase | - |
| ORG43_RS13070 (2639189) | 2639189..2640295 | + | 1107 | WP_000004540.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| ORG43_RS13075 (2640382) | 2640382..2641023 | + | 642 | WP_023236528.1 | high frequency lysogenization protein HflD | - |
| ORG43_RS13080 (2641027) | 2641027..2642397 | + | 1371 | WP_000423763.1 | adenylosuccinate lyase | - |
| ORG43_RS13085 (2642524) | 2642524..2643195 | + | 672 | WP_023234872.1 | two-component system response regulator PhoP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|