MGE detailed information
MGE type: Genomic_island MGE length: 20029 bp
Accession: NZ_CP110814 Location: 3939928..3959956 Organism: Escherichia coli strain THB42-F4 Replicon: chromosome
Accession: NZ_CP110814 Location: 3939928..3959956 Organism: Escherichia coli strain THB42-F4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0552_RS19195 (3935407) | 3935407..3935910 | - | 504 | WP_072647342.1 | type 1 fimbria minor subunit FimG | - |
| N0552_RS19200 (3935923) | 3935923..3936453 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| N0552_RS19205 (3936463) | 3936463..3939099 | - | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| N0552_RS19210 (3939166) | 3939166..3939891 | - | 726 | WP_000066547.1 | type 1 fimbria chaperone FimC | - |
| N0552_RS19215 (3939928) | 3939928..3940467 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| N0552_RS19220 (3940532) | 3940532..3941080 | - | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| N0552_RS19225 (3941562) | 3941562..3942116 | - | 555 | WP_000983104.1 | Tyrosine recombinase XerD | VF |
| N0552_RS19235 (3943412) | 3943412..3944014 | - | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| N0552_RS19240 (3945470) | 3945470..3946186 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| N0552_RS19245 (3946206) | 3946206..3947312 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| N0552_RS19250 (3947377) | 3947377..3948357 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| N0552_RS19255 (3948467) | 3948467..3948672 | + | 206 | Protein_3760 | HNH endonuclease | - |
| N0552_RS19260 (3948940) | 3948940..3950180 | - | 1241 | Protein_3761 | helicase YjhR | - |
| N0552_RS19265 (3950296) | 3950296..3950427 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| N0552_RS19270 (3950918) | 3950918..3951175 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| N0552_RS19275 (3951187) | 3951187..3951732 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| N0552_RS19280 (3951788) | 3951788..3952534 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| N0552_RS19285 (3952703) | 3952703..3952921 | + | 219 | Protein_3766 | hypothetical protein | - |
| N0552_RS19290 (3952959) | 3952959..3953075 | + | 117 | Protein_3767 | VOC family protein | - |
| N0552_RS19295 (3953320) | 3953320..3954441 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| N0552_RS19300 (3954438) | 3954438..3954716 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| N0552_RS19305 (3954728) | 3954728..3956041 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| N0552_RS19310 (3956054) | 3956054..3956860 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| N0552_RS19315 (3956991) | 3956991..3957422 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| N0552_RS19320 (3957434) | 3957434..3958066 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| N0552_RS19325 (3958083) | 3958083..3958865 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| N0552_RS19330 (3959168) | 3959168..3959956 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| N0552_RS19335 (3959961) | 3959961..3960866 | + | 906 | WP_000714563.1 | dihydrodipicolinate synthase family protein | - |
| N0552_RS19340 (3960877) | 3960877..3962844 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| N0552_RS19345 (3962951) | 3962951..3964300 | + | 1350 | WP_001128363.1 | GntP family permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|