MGE detailed information
MGE type: Prophage MGE length: 35342 bp
Accession: NZ_CP110404 Location: 2344725..2380066 Organism: Shigella sonnei strain S17BD05200 Replicon: chromosome
Accession: NZ_CP110404 Location: 2344725..2380066 Organism: Shigella sonnei strain S17BD05200 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF41_RS11550 () | 2340808..2341449 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| OKF41_RS11555 () | 2341505..2342683 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| OKF41_RS11560 () | 2342817..2343107 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| OKF41_RS11565 () | 2343174..2343530 | + | 357 | WP_001295500.1 | protein YebF | - |
| OKF41_RS11570 () | 2343857..2344516 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| OKF41_RS11575 () | 2344725..2346785 | + | 2061 | WP_000936913.1 | oligopeptidase B | - |
| OKF41_RS11580 () | 2346782..2347444 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OKF41_RS11585 () | 2347468..2348124 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OKF41_RS11590 () | 2348226..2348456 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OKF41_RS11595 () | 2348595..2348969 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| OKF41_RS11600 () | 2348973..2349845 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| OKF41_RS11605 () | 2349858..2350199 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2350227..2350461 | - | 235 | - | - | Antitoxin Detail |
| - | 2350357..2350460 | + | 104 | - | - | Toxin Detail |
| OKF41_RS11610 () | 2350592..2351668 | - | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| OKF41_RS11615 () | 2351705..2351950 | - | 246 | Protein_2253 | IS1 family transposase IS1R | Transposase |
| OKF41_RS11625 () | 2353331..2354086 | - | 756 | WP_001282649.1 | IS21 family transposase ISSso4 | Transposase |
| OKF41_RS11630 () | 2354103..2355638 | - | 1536 | WP_000447022.1 | IS21 family transposase ISSso4 | Transposase |
| OKF41_RS11635 () | 2355925..2356382 | - | 458 | Protein_2257 | IS1-like element IS1A family transposase | - |
| OKF41_RS11640 () | 2356411..2356671 | - | 261 | WP_077447296.1 | excisionase | - |
| OKF41_RS11645 () | 2356816..2357972 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| OKF41_RS11650 () | 2358088..2359803 | - | 1716 | WP_011310192.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| OKF41_RS11660 () | 2361812..2361985 | + | 174 | Protein_2262 | metallophosphoesterase | - |
| OKF41_RS11670 () | 2362751..2363056 | + | 306 | Protein_2264 | serine/threonine-protein phosphatase | - |
| OKF41_RS11675 () | 2363114..2364270 | + | 1157 | WP_087879933.1 | IS3 family transposase IS600 | Transposase |
| OKF41_RS11680 () | 2364312..2364512 | + | 201 | Protein_2266 | serine/threonine-protein phosphatase | - |
| OKF41_RS11685 () | 2364513..2364704 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OKF41_RS11690 () | 2364809..2364967 | - | 159 | Protein_2268 | YebV family protein | - |
| OKF41_RS11695 () | 2365025..2365722 | + | 698 | WP_237158197.1 | IS1-like element IS1A family transposase | - |
| OKF41_RS11700 () | 2365739..2365822 | - | 84 | Protein_2270 | DUF1480 family protein | - |
| OKF41_RS11705 () | 2365940..2367379 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OKF41_RS11710 () | 2367460..2370093 | - | 2634 | WP_005138565.1 | Intermembrane transport protein YebT | VF |
| OKF41_RS11715 () | 2370062..2371345 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| OKF41_RS11720 () | 2371475..2371972 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| OKF41_RS11725 () | 2372069..2372767 | + | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| OKF41_RS11730 () | 2372787..2374835 | + | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| OKF41_RS11735 () | 2375027..2375908 | + | 882 | WP_000984517.1 | protease HtpX | - |
| OKF41_RS11740 () | 2375954..2377017 | - | 1064 | Protein_2278 | MFS transporter | - |
| OKF41_RS11745 () | 2377194..2377985 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| OKF41_RS11750 () | 2378128..2378367 | - | 240 | WP_001211011.1 | YobH family protein | - |
| OKF41_RS11755 () | 2378526..2378669 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| OKF41_RS11760 () | 2378744..2379031 | + | 288 | WP_001006860.1 | YebO family protein | - |
| OKF41_RS11765 () | 2379701..2379844 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| OKF41_RS11770 () | 2379857..2380066 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| OKF41_RS11775 () | 2380232..2381041 | + | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| OKF41_RS11780 () | 2381038..2381604 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| OKF41_RS11785 () | 2382033..2382491 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| OKF41_RS11790 () | 2382546..2383397 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| OKF41_RS11795 () | 2383410..2384210 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|