Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2350227..2350461 | Replicon | chromosome |
| Accession | NZ_CP110404 | ||
| Organism | Shigella sonnei strain S17BD05200 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2350357..2350460 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2350227..2350461 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF41_RS11580 | 2346782..2347444 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OKF41_RS11585 | 2347468..2348124 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OKF41_RS11590 | 2348226..2348456 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OKF41_RS11595 | 2348595..2348969 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| OKF41_RS11600 | 2348973..2349845 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| OKF41_RS11605 | 2349858..2350199 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2350227..2350461 | - | 235 | - | - | Antitoxin |
| - | 2350357..2350460 | + | 104 | - | - | Toxin |
| OKF41_RS11610 | 2350592..2351668 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| OKF41_RS11615 | 2351705..2351950 | - | 246 | Protein_2253 | IS1 family transposase | - |
| OKF41_RS11625 | 2353331..2354086 | - | 756 | WP_001282649.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 2344725..2380066 | 35341 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263810 NZ_CP110404:2350357-2350460 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT263810 NZ_CP110404:c2350461-2350227 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
