MGE detailed information
MGE type: Genomic_island MGE length: 13388 bp
Accession: NZ_CP110404 Location: 1252935..1266322 Organism: Shigella sonnei strain S17BD05200 Replicon: chromosome
Accession: NZ_CP110404 Location: 1252935..1266322 Organism: Shigella sonnei strain S17BD05200 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF41_RS06030 (1248004) | 1248004..1252212 | + | 4209 | WP_265071990.1 | RHS element core protein | - |
| OKF41_RS06035 (1252224) | 1252224..1252673 | + | 450 | WP_005141515.1 | RHS element protein dsORF-h1 | - |
| OKF41_RS06040 (1252935) | 1252935..1254071 | + | 1137 | Protein_1162 | ISAs1 family transposase ISEc1 | Transposase |
| OKF41_RS06045 (1254109) | 1254109..1254519 | + | 411 | WP_162772774.1 | hypothetical protein | - |
| OKF41_RS06050 (1254519) | 1254519..1254896 | + | 378 | WP_001077737.1 | hypothetical protein | - |
| OKF41_RS06055 (1255365) | 1255365..1256501 | + | 1137 | WP_000420787.1 | ISAs1 family transposase ISEc1 | Transposase |
| OKF41_RS06060 (1256543) | 1256543..1257313 | - | 771 | WP_001118061.1 | 2-oxoglutaramate amidase | - |
| OKF41_RS06065 (1257494) | 1257494..1257940 | + | 447 | WP_005141527.1 | Ivy family C-type lysozyme inhibitor | - |
| OKF41_RS06070 (1257983) | 1257983..1260427 | - | 2445 | WP_000973074.1 | Acyl-coenzyme A dehydrogenase | VF |
| OKF41_RS06075 (1260667) | 1260667..1261245 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| OKF41_RS06080 (1261451) | 1261451..1262218 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| OKF41_RS06085 (1262189) | 1262189..1262929 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| OKF41_RS06090 (1263085) | 1263085..1263363 | - | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| OKF41_RS06095 (1263366) | 1263366..1263626 | - | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| OKF41_RS06100 (1263812) | 1263812..1264585 | + | 774 | WP_127148796.1 | hypothetical protein | VF |
| OKF41_RS06110 (1265626) | 1265626..1265754 | + | 129 | Protein_1176 | ISAs1 family transposase | - |
| OKF41_RS06115 (1265825) | 1265825..1266322 | + | 498 | WP_000006258.1 | REP-associated tyrosine transposase RayT | - |
| OKF41_RS06120 (1266445) | 1266445..1268157 | - | 1713 | Protein_1178 | flagellar biosynthesis protein FlhA | - |
| OKF41_RS06125 (1268129) | 1268129..1268914 | + | 786 | WP_000207568.1 | putative lateral flagellar export/assembly protein LafU | - |
| OKF41_RS06130 (1268985) | 1268985..1270040 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| OKF41_RS06135 (1270037) | 1270037..1270489 | + | 453 | WP_001059889.1 | GNAT family N-acetyltransferase | - |
| OKF41_RS06140 (1270735) | 1270735..1271256 | + | 522 | Protein_1182 | RNA ligase RtcB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|