MGE detailed information
MGE type: Genomic_island MGE length: 62372 bp
Accession: NZ_CP110398 Location: 4350306..4412677 Organism: Shigella sonnei strain S17BD06357 Replicon: chromosome
Accession: NZ_CP110398 Location: 4350306..4412677 Organism: Shigella sonnei strain S17BD06357 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF40_RS21850 (4345911) | 4345911..4346942 | + | 1032 | WP_005136263.1 | IS630-like element IS630 family transposase | - |
| OKF40_RS21855 (4346964) | 4346964..4347197 | - | 234 | Protein_4252 | hypothetical protein | - |
| OKF40_RS21860 (4347371) | 4347371..4348084 | + | 714 | WP_001076222.1 | dTMP kinase | - |
| OKF40_RS21865 (4348116) | 4348116..4348874 | + | 759 | WP_000339544.1 | hypothetical protein | - |
| OKF40_RS21870 (4348920) | 4348920..4350278 | + | 1359 | WP_000896882.1 | lipopolysaccharide biosynthesis protein | - |
| OKF40_RS21880 (4351026) | 4351026..4351190 | + | 165 | Protein_4257 | IS3 family transposase | - |
| OKF40_RS21885 (4351261) | 4351261..4351830 | - | 570 | WP_237158179.1 | hypothetical protein | - |
| OKF40_RS21890 (4351889) | 4351889..4355746 | - | 3858 | WP_001034111.1 | Serine protease pet autotransporter | VF |
| OKF40_RS21895 (4356107) | 4356107..4357111 | - | 1005 | Protein_4260 | conjugal transfer protein TraF | - |
| OKF40_RS21900 (4357096) | 4357096..4357473 | + | 378 | Protein_4261 | transposase | - |
| OKF40_RS21905 (4357512) | 4357512..4357859 | - | 348 | Protein_4262 | transposase | - |
| OKF40_RS21910 (4357905) | 4357905..4358075 | - | 171 | Protein_4263 | IS3 family transposase | - |
| OKF40_RS21915 (4358217) | 4358217..4361732 | - | 3516 | WP_039063620.1 | AAA domain-containing protein | - |
| OKF40_RS21920 (4362184) | 4362184..4362486 | - | 303 | Protein_4265 | Prophage integrase IntA ; Integrase | Integrase |
| OKF40_RS21925 (4362760) | 4362760..4363779 | - | 1020 | WP_000878026.1 | IS110 family transposase ISEc11 | Transposase |
| OKF40_RS21930 (4363917) | 4363917..4364888 | - | 972 | Protein_4267 | Prophage integrase IntS ; Integrase | Integrase |
| OKF40_RS21935 (4365292) | 4365292..4366239 | - | 948 | WP_001440173.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| OKF40_RS21940 (4366232) | 4366232..4366627 | - | 396 | WP_000208386.1 | DUF6088 family protein | Antitoxin Detail |
| OKF40_RS21945 (4366696) | 4366696..4367540 | - | 845 | Protein_4270 | DUF4942 domain-containing protein | - |
| OKF40_RS21950 (4367625) | 4367625..4367822 | - | 198 | WP_000839266.1 | DUF957 domain-containing protein | - |
| OKF40_RS21955 (4367840) | 4367840..4368328 | - | 489 | WP_000761679.1 | DUF5983 family protein | - |
| OKF40_RS21960 (4368325) | 4368325..4368702 | - | 378 | WP_000854719.1 | TA system toxin CbtA family protein | Toxin Detail |
| OKF40_RS21965 (4368792) | 4368792..4369160 | - | 369 | WP_001285113.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| OKF40_RS21970 (4369210) | 4369210..4369854 | - | 645 | WP_000086770.1 | hypothetical protein | - |
| OKF40_RS21975 (4369873) | 4369873..4370094 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| OKF40_RS21980 (4370163) | 4370163..4370639 | - | 477 | WP_001186715.1 | RadC family protein | - |
| OKF40_RS21985 (4370655) | 4370655..4371140 | - | 486 | WP_000213705.1 | antirestriction protein | - |
| OKF40_RS21990 (4371217) | 4371217..4372035 | - | 819 | WP_001175145.1 | DUF932 domain-containing protein | - |
| OKF40_RS21995 (4372125) | 4372125..4372358 | - | 234 | WP_001278282.1 | DUF905 family protein | - |
| OKF40_RS22000 (4372364) | 4372364..4373041 | - | 678 | WP_001097369.1 | hypothetical protein | - |
| OKF40_RS22005 (4373160) | 4373160..4374044 | - | 885 | WP_000010398.1 | 50S ribosome-binding GTPase | - |
| OKF40_RS22010 (4374229) | 4374229..4375359 | + | 1131 | WP_000147746.1 | hypothetical protein | - |
| OKF40_RS22015 (4376878) | 4376878..4377609 | + | 732 | WP_001075484.1 | inovirus Gp2 family protein | - |
| OKF40_RS22020 (4377703) | 4377703..4377858 | - | 156 | WP_020923993.1 | hypothetical protein | - |
| OKF40_RS22025 (4377851) | 4377851..4378141 | + | 291 | WP_231391179.1 | hypothetical protein | - |
| OKF40_RS22030 (4378153) | 4378153..4378359 | - | 207 | WP_024187081.1 | hypothetical protein | - |
| OKF40_RS22035 (4378792) | 4378792..4380396 | + | 1605 | WP_001067608.1 | YfjI family protein | - |
| OKF40_RS22040 (4381980) | 4381980..4382546 | + | 567 | WP_097343508.1 | inovirus-type Gp2 protein | - |
| OKF40_RS22045 (4382804) | 4382804..4383376 | + | 573 | WP_202794907.1 | hypothetical protein | - |
| OKF40_RS22050 (4383445) | 4383445..4383681 | + | 237 | WP_000958094.1 | AlpA family transcriptional regulator | - |
| OKF40_RS22055 (4383950) | 4383950..4384498 | + | 549 | WP_001167427.1 | hypothetical protein | - |
| OKF40_RS22060 (4384517) | 4384517..4384861 | - | 345 | WP_000166949.1 | ProQ/FinO family protein | - |
| OKF40_RS22065 (4384858) | 4384858..4385031 | - | 174 | WP_000258194.1 | hypothetical protein | - |
| OKF40_RS22070 (4385167) | 4385167..4385340 | + | 174 | WP_153274857.1 | hypothetical protein | - |
| OKF40_RS22075 (4385754) | 4385754..4386188 | + | 435 | WP_000038247.1 | H-NS family nucleoid-associated regulatory protein | - |
| OKF40_RS22080 (4386605) | 4386605..4387174 | - | 570 | WP_000517677.1 | hypothetical protein | - |
| OKF40_RS22085 (4387274) | 4387274..4388506 | - | 1233 | WP_000271618.1 | dNTP triphosphohydrolase | - |
| OKF40_RS22090 (4388657) | 4388657..4389818 | - | 1162 | Protein_4299 | IS3 family transposase IS3 | Transposase |
| OKF40_RS22095 (4389986) | 4389986..4390387 | + | 402 | WP_235640788.1 | hypothetical protein | - |
| OKF40_RS22100 (4390421) | 4390421..4391125 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| OKF40_RS22105 (4391202) | 4391202..4393421 | - | 2220 | Protein_4302 | Tn3 family transposase TnpA_Tn3 | Transposase |
| OKF40_RS22110 (4393447) | 4393447..4393779 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| OKF40_RS22115 (4393826) | 4393826..4394701 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| OKF40_RS22120 (4394957) | 4394957..4395940 | - | 984 | Protein_4305 | IS1380 family transposase ISEcp1 | Transposase |
| OKF40_RS22130 (4396697) | 4396697..4397026 | + | 330 | WP_265071967.1 | outer membrane beta-barrel protein | - |
| OKF40_RS22135 (4397450) | 4397450..4398346 | + | 897 | WP_000228489.1 | WYL domain-containing protein | - |
| OKF40_RS22140 (4398395) | 4398395..4399474 | + | 1080 | WP_001207396.1 | hypothetical protein | - |
| OKF40_RS22145 (4399521) | 4399521..4401092 | + | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| OKF40_RS22155 (4402501) | 4402501..4402668 | + | 168 | WP_202794735.1 | YkgJ family cysteine cluster protein | - |
| OKF40_RS22160 (4402808) | 4402808..4403005 | + | 198 | WP_001238007.1 | hypothetical protein | - |
| OKF40_RS22165 (4403071) | 4403071..4404744 | + | 1674 | WP_000287380.1 | phosphoethanolamine transferase | - |
| OKF40_RS22170 (4404888) | 4404888..4405931 | - | 1044 | WP_000999864.1 | hypothetical protein | - |
| OKF40_RS22175 (4406365) | 4406365..4407555 | - | 1191 | WP_001218744.1 | Prophage integrase IntS ; Integrase | Integrase |
| OKF40_RS22185 (4407913) | 4407913..4408620 | - | 708 | WP_000234514.1 | DUF554 domain-containing protein | - |
| OKF40_RS22190 (4408773) | 4408773..4408856 | + | 84 | WP_211180506.1 | protein YqgH | - |
| OKF40_RS22195 (4409022) | 4409022..4410968 | + | 1947 | WP_014334061.1 | ornithine decarboxylase | - |
| OKF40_RS22200 (4411165) | 4411165..4412292 | - | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| OKF40_RS22205 (4412420) | 4412420..4412677 | + | 258 | Protein_4321 | ornithine decarboxylase | - |
| OKF40_RS22210 (4412726) | 4412726..4413982 | - | 1257 | WP_001049791.1 | nucleoside permease NupG | - |
| OKF40_RS22215 (4414184) | 4414184..4415263 | - | 1080 | WP_005155224.1 | membrane-bound lytic murein transglycosylase MltC | - |
| OKF40_RS22220 (4415328) | 4415328..4415603 | - | 276 | WP_000091700.1 | oxidative damage protection protein | - |
| OKF40_RS22225 (4415631) | 4415631..4416683 | - | 1053 | WP_005155366.1 | A/G-specific adenine glycosylase | - |
| OKF40_RS22230 (4416844) | 4416844..4417563 | + | 720 | WP_000786911.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|