MGE detailed information
MGE type: Prophage MGE length: 35342 bp
Accession: NZ_CP110398 Location: 2328938..2364279 Organism: Shigella sonnei strain S17BD06357 Replicon: chromosome
Accession: NZ_CP110398 Location: 2328938..2364279 Organism: Shigella sonnei strain S17BD06357 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF40_RS11430 () | 2325021..2325662 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| OKF40_RS11435 () | 2325718..2326896 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| OKF40_RS11440 () | 2327030..2327320 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| OKF40_RS11445 () | 2327387..2327743 | + | 357 | WP_001295500.1 | protein YebF | - |
| OKF40_RS11450 () | 2328070..2328729 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| OKF40_RS11455 () | 2328938..2330998 | + | 2061 | WP_000936913.1 | oligopeptidase B | - |
| OKF40_RS11460 () | 2330995..2331657 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OKF40_RS11465 () | 2331681..2332337 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OKF40_RS11470 () | 2332439..2332669 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OKF40_RS11475 () | 2332808..2333182 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| OKF40_RS11480 () | 2333186..2334058 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| OKF40_RS11485 () | 2334071..2334412 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2334440..2334674 | - | 235 | - | - | Antitoxin Detail |
| - | 2334570..2334673 | + | 104 | - | - | Toxin Detail |
| OKF40_RS11490 () | 2334805..2335881 | - | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| OKF40_RS11495 () | 2335918..2336163 | - | 246 | Protein_2227 | IS1 family transposase IS1R | Transposase |
| OKF40_RS11505 () | 2337544..2338299 | - | 756 | WP_001282649.1 | IS21 family transposase ISSso4 | Transposase |
| OKF40_RS11510 () | 2338316..2339851 | - | 1536 | WP_000447022.1 | IS21 family transposase ISSso4 | Transposase |
| OKF40_RS11515 () | 2340138..2340595 | - | 458 | Protein_2231 | IS1-like element IS1A family transposase | - |
| OKF40_RS11520 () | 2340624..2340884 | - | 261 | WP_077447296.1 | excisionase | - |
| OKF40_RS11525 () | 2341029..2342185 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| OKF40_RS11530 () | 2342301..2344016 | - | 1716 | WP_011310192.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| OKF40_RS11540 () | 2346025..2346198 | + | 174 | Protein_2236 | metallophosphoesterase | - |
| OKF40_RS11550 () | 2346964..2347269 | + | 306 | Protein_2238 | serine/threonine-protein phosphatase | - |
| OKF40_RS11555 () | 2347327..2348483 | + | 1157 | WP_087879933.1 | IS3 family transposase IS600 | Transposase |
| OKF40_RS11560 () | 2348525..2348725 | + | 201 | Protein_2240 | serine/threonine-protein phosphatase | - |
| OKF40_RS11565 () | 2348726..2348917 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OKF40_RS11570 () | 2349022..2349180 | - | 159 | Protein_2242 | YebV family protein | - |
| OKF40_RS11575 () | 2349238..2349935 | + | 698 | WP_237158197.1 | IS1-like element IS1A family transposase | - |
| OKF40_RS11580 () | 2349952..2350035 | - | 84 | Protein_2244 | DUF1480 family protein | - |
| OKF40_RS11585 () | 2350153..2351592 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OKF40_RS11590 () | 2351673..2354306 | - | 2634 | WP_005138565.1 | Intermembrane transport protein YebT | VF |
| OKF40_RS11595 () | 2354275..2355558 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| OKF40_RS11600 () | 2355688..2356185 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| OKF40_RS11605 () | 2356282..2356980 | + | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| OKF40_RS11610 () | 2357000..2359048 | + | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| OKF40_RS11615 () | 2359240..2360121 | + | 882 | WP_000984517.1 | protease HtpX | - |
| OKF40_RS11620 () | 2360167..2361230 | - | 1064 | Protein_2252 | MFS transporter | - |
| OKF40_RS11625 () | 2361407..2362198 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| OKF40_RS11630 () | 2362341..2362580 | - | 240 | WP_001211011.1 | YobH family protein | - |
| OKF40_RS11635 () | 2362739..2362882 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| OKF40_RS11640 () | 2362957..2363244 | + | 288 | WP_001006860.1 | YebO family protein | - |
| OKF40_RS11645 () | 2363914..2364057 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| OKF40_RS11650 () | 2364070..2364279 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| OKF40_RS11655 () | 2364445..2365254 | + | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| OKF40_RS11660 () | 2365251..2365817 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| OKF40_RS11665 () | 2366246..2366704 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| OKF40_RS11670 () | 2366759..2367610 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| OKF40_RS11675 () | 2367623..2368423 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|