Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2334440..2334674 | Replicon | chromosome |
| Accession | NZ_CP110398 | ||
| Organism | Shigella sonnei strain S17BD06357 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2334570..2334673 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2334440..2334674 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF40_RS11460 | 2330995..2331657 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OKF40_RS11465 | 2331681..2332337 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OKF40_RS11470 | 2332439..2332669 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OKF40_RS11475 | 2332808..2333182 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| OKF40_RS11480 | 2333186..2334058 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| OKF40_RS11485 | 2334071..2334412 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2334440..2334674 | - | 235 | - | - | Antitoxin |
| - | 2334570..2334673 | + | 104 | - | - | Toxin |
| OKF40_RS11490 | 2334805..2335881 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| OKF40_RS11495 | 2335918..2336163 | - | 246 | Protein_2227 | IS1 family transposase | - |
| OKF40_RS11505 | 2337544..2338299 | - | 756 | WP_001282649.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 2328938..2364279 | 35341 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263794 NZ_CP110398:2334570-2334673 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT263794 NZ_CP110398:c2334674-2334440 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
