MGE detailed information
MGE type: Genomic_island MGE length: 13388 bp
Accession: NZ_CP110398 Location: 1253492..1266879 Organism: Shigella sonnei strain S17BD06357 Replicon: chromosome
Accession: NZ_CP110398 Location: 1253492..1266879 Organism: Shigella sonnei strain S17BD06357 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKF40_RS06025 (1248561) | 1248561..1252769 | + | 4209 | WP_077124360.1 | RHS element core protein | - |
| OKF40_RS06030 (1252781) | 1252781..1253230 | + | 450 | WP_005141515.1 | RHS element protein dsORF-h1 | - |
| OKF40_RS06035 (1253492) | 1253492..1254628 | + | 1137 | Protein_1160 | ISAs1 family transposase ISEc1 | Transposase |
| OKF40_RS06040 (1254666) | 1254666..1255076 | + | 411 | WP_162772774.1 | hypothetical protein | - |
| OKF40_RS06045 (1255076) | 1255076..1255453 | + | 378 | WP_001077737.1 | hypothetical protein | - |
| OKF40_RS06050 (1255922) | 1255922..1257058 | + | 1137 | WP_000420787.1 | ISAs1 family transposase ISEc1 | Transposase |
| OKF40_RS06055 (1257100) | 1257100..1257870 | - | 771 | WP_001118061.1 | 2-oxoglutaramate amidase | - |
| OKF40_RS06060 (1258051) | 1258051..1258497 | + | 447 | WP_005141527.1 | Ivy family C-type lysozyme inhibitor | - |
| OKF40_RS06065 (1258540) | 1258540..1260984 | - | 2445 | WP_000973074.1 | Acyl-coenzyme A dehydrogenase | VF |
| OKF40_RS06070 (1261224) | 1261224..1261802 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| OKF40_RS06075 (1262008) | 1262008..1262775 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| OKF40_RS06080 (1262746) | 1262746..1263486 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| OKF40_RS06085 (1263642) | 1263642..1263920 | - | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| OKF40_RS06090 (1263923) | 1263923..1264183 | - | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| OKF40_RS06095 (1264369) | 1264369..1265142 | + | 774 | WP_127148796.1 | hypothetical protein | VF |
| OKF40_RS06105 (1266183) | 1266183..1266311 | + | 129 | Protein_1174 | ISAs1 family transposase | - |
| OKF40_RS06110 (1266382) | 1266382..1266879 | + | 498 | WP_000006258.1 | REP-associated tyrosine transposase RayT | - |
| OKF40_RS06115 (1267002) | 1267002..1268714 | - | 1713 | Protein_1176 | flagellar biosynthesis protein FlhA | - |
| OKF40_RS06120 (1268686) | 1268686..1269471 | + | 786 | WP_000207568.1 | putative lateral flagellar export/assembly protein LafU | - |
| OKF40_RS06125 (1269542) | 1269542..1270597 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| OKF40_RS06130 (1270594) | 1270594..1271046 | + | 453 | WP_001059889.1 | GNAT family N-acetyltransferase | - |
| OKF40_RS06135 (1271292) | 1271292..1271813 | + | 522 | Protein_1180 | RNA ligase RtcB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|