MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 89566 bp
Accession: NZ_CP110349 Location: 5776987..5866552 Organism: Pseudomonas aeruginosa strain PALA40 Replicon: chromosome
Accession: NZ_CP110349 Location: 5776987..5866552 Organism: Pseudomonas aeruginosa strain PALA40 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA40_RS27230 (PALA40_05372) | 5772559..5776758 | + | 4200 | WP_023083207.1 | two-partner secretion system exoprotein TpsA4 | - |
| PALA40_RS27240 (PALA40_05373) | 5777124..5777990 | + | 867 | WP_003111785.1 | ParA family protein | - |
| PALA40_RS27245 (PALA40_05374) | 5777992..5778729 | + | 738 | WP_023083208.1 | hypothetical protein | - |
| PALA40_RS27250 (PALA40_05375) | 5778726..5779223 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| PALA40_RS27255 (PALA40_05376) | 5779220..5780371 | + | 1152 | WP_023083209.1 | Lar family restriction alleviation protein | - |
| PALA40_RS27260 (PALA40_05377) | 5780371..5781072 | + | 702 | WP_023083210.1 | DUF2786 domain-containing protein | - |
| PALA40_RS27265 (PALA40_05378) | 5781069..5781776 | + | 708 | WP_023083211.1 | HNH endonuclease signature motif containing protein | - |
| PALA40_RS27270 (PALA40_05379) | 5781760..5781984 | + | 225 | WP_003134074.1 | hypothetical protein | - |
| PALA40_RS27275 (PALA40_05380) | 5781981..5783324 | + | 1344 | WP_023083212.1 | replicative DNA helicase | - |
| PALA40_RS27280 | 5783763..5784209 | - | 447 | WP_031631896.1 | hypothetical protein | - |
| PALA40_RS27285 (PALA40_05382) | 5784387..5784572 | + | 186 | WP_023083214.1 | hypothetical protein | - |
| PALA40_RS27290 (PALA40_05383) | 5784562..5785089 | + | 528 | WP_004352849.1 | hypothetical protein | - |
| PALA40_RS27295 (PALA40_05384) | 5785086..5785343 | + | 258 | WP_004352848.1 | hypothetical protein | - |
| PALA40_RS27300 (PALA40_05385) | 5785336..5785578 | + | 243 | WP_023083215.1 | hypothetical protein | - |
| PALA40_RS27305 (PALA40_05386) | 5785571..5785804 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| PALA40_RS27310 (PALA40_05387) | 5785804..5786820 | + | 1017 | WP_004352847.1 | nucleoid-associated protein YejK | - |
| PALA40_RS27315 (PALA40_05388) | 5786823..5787077 | + | 255 | WP_009316384.1 | Arc family DNA-binding protein | - |
| PALA40_RS27320 (PALA40_05389) | 5787074..5788810 | + | 1737 | WP_004352845.1 | ParB family protein | - |
| PALA40_RS27325 (PALA40_05390) | 5788838..5789605 | + | 768 | WP_004352844.1 | DUF2857 domain-containing protein | - |
| PALA40_RS27330 (PALA40_05391) | 5789602..5790873 | + | 1272 | WP_023083217.1 | STY4528 family pathogenicity island replication protein | - |
| PALA40_RS27335 | 5790870..5791667 | + | 798 | WP_235597565.1 | hypothetical protein | - |
| PALA40_RS27340 (PALA40_05394) | 5791824..5792552 | + | 729 | WP_004352842.1 | TIGR03761 family integrating conjugative element protein | - |
| PALA40_RS27345 (PALA40_05395) | 5792558..5793106 | + | 549 | WP_004352841.1 | DUF3158 family protein | - |
| PALA40_RS27350 (PALA40_05396) | 5793153..5793992 | + | 840 | WP_003105750.1 | Rha family transcriptional regulator | - |
| PALA40_RS27355 (PALA40_05397) | 5794022..5794510 | + | 489 | WP_004352840.1 | single-stranded DNA-binding protein | - |
| PALA40_RS27360 | 5794666..5794833 | + | 168 | WP_128729268.1 | CrpP family ICE-associated protein | - |
| PALA40_RS27365 (PALA40_05398) | 5794899..5795117 | - | 219 | WP_023083218.1 | hypothetical protein | - |
| PALA40_RS27370 (PALA40_05399) | 5795131..5795328 | - | 198 | WP_023083219.1 | hypothetical protein | - |
| PALA40_RS27375 (PALA40_05400) | 5795344..5795754 | - | 411 | WP_003134109.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PALA40_RS27380 | 5795754..5795984 | - | 231 | WP_031634724.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PALA40_RS27385 (PALA40_05401) | 5796240..5798159 | + | 1920 | WP_004352838.1 | type I DNA topoisomerase | - |
| PALA40_RS27390 (PALA40_05402) | 5798467..5798676 | + | 210 | WP_003105733.1 | cold-shock protein | - |
| PALA40_RS27395 (PALA40_05403) | 5798897..5800786 | + | 1890 | WP_003105732.1 | hypothetical protein | - |
| PALA40_RS27400 (PALA40_05404) | 5800783..5802756 | + | 1974 | WP_003105731.1 | DEAD/DEAH box helicase | - |
| PALA40_RS27405 (PALA40_05405) | 5802878..5803660 | + | 783 | WP_004352836.1 | phage Gp37/Gp68 family protein | - |
| PALA40_RS27410 (PALA40_05406) | 5803693..5804946 | + | 1254 | WP_004352835.1 | three-Cys-motif partner protein TcmP | - |
| PALA40_RS27415 (PALA40_05407) | 5805120..5806244 | + | 1125 | WP_003099755.1 | hypothetical protein | VF |
| PALA40_RS27420 (PALA40_05408) | 5806244..5807953 | + | 1710 | WP_004352834.1 | hypothetical protein | VF |
| PALA40_RS27425 (PALA40_05409) | 5807957..5809282 | + | 1326 | WP_004352832.1 | type 4b pilus protein PilO2 | - |
| PALA40_RS27430 (PALA40_05410) | 5809272..5809805 | + | 534 | WP_004352829.1 | type IV pilus biogenesis protein PilP | - |
| PALA40_RS27435 (PALA40_05411) | 5809814..5811394 | + | 1581 | WP_003123334.1 | hypothetical protein | VF |
| PALA40_RS27440 (PALA40_05412) | 5811394..5812473 | + | 1080 | WP_003123335.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| PALA40_RS27445 (PALA40_05413) | 5812495..5813025 | + | 531 | WP_004352827.1 | hypothetical protein | VF |
| PALA40_RS27450 (PALA40_05414) | 5813022..5813963 | + | 942 | WP_004352826.1 | ATPase, T2SS/T4P/T4SS family | - |
| PALA40_RS27455 (PALA40_05415) | 5813968..5815296 | + | 1329 | WP_004352824.1 | hypothetical protein | VF |
| PALA40_RS27460 (PALA40_05416) | 5815325..5815762 | + | 438 | WP_004352822.1 | hypothetical protein | VF |
| PALA40_RS27465 (PALA40_05417) | 5816684..5817073 | + | 390 | WP_004352820.1 | hypothetical protein | - |
| PALA40_RS27470 (PALA40_05418) | 5817148..5817324 | + | 177 | WP_015503587.1 | hypothetical protein | - |
| PALA40_RS27475 (PALA40_05419) | 5817326..5817460 | + | 135 | WP_003099783.1 | hypothetical protein | - |
| PALA40_RS27480 (PALA40_05420) | 5817785..5818264 | + | 480 | WP_003117056.1 | STY4534 family ICE replication protein | - |
| PALA40_RS27485 (PALA40_05421) | 5818402..5818560 | + | 159 | WP_003109368.1 | hypothetical protein | - |
| PALA40_RS27490 (PALA40_05422) | 5818634..5818831 | + | 198 | WP_015503588.1 | hypothetical protein | - |
| PALA40_RS27495 | 5818936..5819214 | + | 279 | WP_004352810.1 | hypothetical protein | - |
| PALA40_RS27500 (PALA40_05424) | 5819316..5820023 | + | 708 | WP_004352808.1 | hypothetical protein | - |
| PALA40_RS27505 (PALA40_05425) | 5820259..5820609 | + | 351 | WP_004347949.1 | hypothetical protein | - |
| PALA40_RS27510 (PALA40_05426) | 5820666..5821277 | + | 612 | Protein_5445 | DUF3275 family protein | - |
| PALA40_RS27515 (PALA40_05427) | 5821560..5821922 | + | 363 | WP_003117061.1 | hypothetical protein | - |
| PALA40_RS27520 (PALA40_05428) | 5821990..5822244 | + | 255 | WP_003117062.1 | hypothetical protein | - |
| PALA40_RS27525 (PALA40_05429) | 5822337..5822942 | + | 606 | WP_003125296.1 | hypothetical protein | - |
| PALA40_RS27530 (PALA40_05430) | 5822972..5824417 | + | 1446 | WP_003125297.1 | DUF6094 domain-containing protein | - |
| PALA40_RS27535 (PALA40_05431) | 5824522..5826771 | + | 2250 | WP_023083221.1 | DEAD/DEAH box helicase | - |
| PALA40_RS27540 | 5826796..5827179 | - | 384 | WP_123789178.1 | hypothetical protein | - |
| PALA40_RS27545 (PALA40_05432) | 5827385..5827678 | + | 294 | WP_021264362.1 | IS3 family transposase ISCARN64 | Transposase |
| PALA40_RS27550 (PALA40_05433) | 5827675..5828541 | + | 867 | WP_004352797.1 | IS3 family transposase ISAeca4 | Transposase |
| PALA40_RS27555 (PALA40_05434) | 5828801..5829493 | + | 693 | WP_004352794.1 | hypothetical protein | - |
| PALA40_RS27560 (PALA40_05435) | 5829504..5830259 | + | 756 | WP_003099814.1 | TIGR03759 family integrating conjugative element protein | - |
| PALA40_RS27565 (PALA40_05436) | 5830244..5830825 | + | 582 | WP_003123352.1 | hypothetical protein | VF |
| PALA40_RS27570 (PALA40_05437) | 5830822..5831322 | + | 501 | WP_004352788.1 | integrating conjugative element protein | - |
| PALA40_RS27575 (PALA40_05438) | 5831331..5831600 | + | 270 | WP_003099820.1 | hypothetical protein | - |
| PALA40_RS27580 (PALA40_05439) | 5831604..5833835 | + | 2232 | WP_003159694.1 | type IV conjugative transfer system coupling protein TraD | - |
| PALA40_RS27585 (PALA40_05440) | 5833835..5834581 | + | 747 | WP_023083223.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| PALA40_RS27590 | 5834599..5835090 | + | 492 | WP_031631905.1 | hypothetical protein | - |
| PALA40_RS27595 (PALA40_05441) | 5835331..5836812 | + | 1482 | WP_023083224.1 | UvrD-helicase domain-containing protein | - |
| PALA40_RS27600 (PALA40_05442) | 5836944..5838053 | + | 1110 | WP_023083225.1 | hypothetical protein | - |
| PALA40_RS27605 | 5838099..5838365 | - | 267 | WP_223195009.1 | DUF2845 domain-containing protein | - |
| PALA40_RS27610 (PALA40_05443) | 5838583..5838882 | + | 300 | WP_003117075.1 | hypothetical protein | - |
| PALA40_RS27615 (PALA40_05444) | 5838976..5839314 | + | 339 | WP_003158157.1 | RAQPRD family integrative conjugative element protein | - |
| PALA40_RS27620 | 5839311..5839550 | + | 240 | WP_003121019.1 | TIGR03758 family integrating conjugative element protein | - |
| PALA40_RS27625 (PALA40_05446) | 5839568..5839924 | + | 357 | WP_003117077.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| PALA40_RS27630 (PALA40_05447) | 5839935..5840321 | + | 387 | WP_003117078.1 | TIGR03750 family conjugal transfer protein | - |
| PALA40_RS27635 (PALA40_05448) | 5840318..5840977 | + | 660 | WP_003117079.1 | TIGR03746 family integrating conjugative element protein | - |
| PALA40_RS27640 (PALA40_05449) | 5840974..5841858 | + | 885 | WP_003121020.1 | TIGR03749 family integrating conjugative element protein | - |
| PALA40_RS27645 (PALA40_05450) | 5841842..5843347 | + | 1506 | WP_003121021.1 | TIGR03752 family integrating conjugative element protein | - |
| PALA40_RS27650 (PALA40_05451) | 5843325..5843768 | + | 444 | WP_003121022.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| PALA40_RS27655 (PALA40_05452) | 5843768..5846710 | + | 2943 | WP_010792229.1 | conjugative transfer ATPase | - |
| PALA40_RS27660 (PALA40_05453) | 5846707..5846991 | + | 285 | WP_003099860.1 | hypothetical protein | - |
| PALA40_RS27665 (PALA40_05454) | 5846988..5847647 | + | 660 | WP_003109405.1 | DsbA family protein | - |
| PALA40_RS27670 (PALA40_05455) | 5847644..5847862 | - | 219 | WP_003109406.1 | hypothetical protein | - |
| PALA40_RS27675 (PALA40_05457) | 5849709..5850389 | + | 681 | WP_004574802.1 | cupin domain-containing protein | - |
| PALA40_RS27680 (PALA40_05458) | 5850386..5850970 | + | 585 | WP_004574803.1 | hypothetical protein | VF |
| PALA40_RS27685 (PALA40_05459) | 5851030..5851806 | + | 777 | WP_004574804.1 | 3-alpha-hydroxycholanate dehydrogenase (NADP(+)) | VF |
| PALA40_RS27690 (PALA40_05460) | 5851821..5852387 | + | 567 | WP_004574805.1 | OsmC family protein | - |
| PALA40_RS27695 (PALA40_05461) | 5852684..5853292 | + | 609 | WP_014003956.1 | hypothetical protein | - |
| PALA40_RS27700 (PALA40_05462) | 5853295..5853855 | + | 561 | WP_014003957.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| PALA40_RS27705 (PALA40_05463) | 5853859..5856825 | + | 2967 | WP_011005944.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| PALA40_RS27710 | 5857324..5857755 | + | 432 | WP_003111736.1 | TIGR03757 family integrating conjugative element protein | - |
| PALA40_RS27715 (PALA40_05464) | 5857755..5858693 | + | 939 | WP_016851627.1 | TIGR03756 family integrating conjugative element protein | - |
| PALA40_RS27720 (PALA40_05465) | 5858711..5860093 | + | 1383 | WP_023083227.1 | integrating conjugative element protein | - |
| PALA40_RS27725 (PALA40_05466) | 5860093..5860440 | + | 348 | WP_023083228.1 | hypothetical protein | - |
| PALA40_RS27730 (PALA40_05467) | 5860437..5861981 | + | 1545 | WP_023083229.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PALA40_RS27735 (PALA40_05468) | 5862016..5862357 | - | 342 | WP_023083230.1 | DUF3742 family protein | - |
| PALA40_RS27740 | 5862458..5862643 | + | 186 | Protein_5491 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PALA40_RS27745 (PALA40_05469) | 5862971..5864890 | + | 1920 | WP_023083231.1 | MobH family relaxase | - |
| PALA40_RS27750 (PALA40_05470) | 5864887..5866188 | + | 1302 | WP_023083232.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PALA40_RS27770 (PALA40_05474) | 5866990..5869554 | - | 2565 | WP_003145976.1 | ATP-dependent chaperone ClpB | - |
| PALA40_RS27775 (PALA40_05475) | 5869710..5870438 | - | 729 | WP_003102588.1 | peptidoglycan editing factor PgeF | - |
| PALA40_RS27780 (PALA40_05476) | 5870435..5871397 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|