MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73030 bp
Accession: NZ_CP110313 Location: 5072497..5145526 Organism: Xanthomonas phaseoli pv. phaseoli strain BB007a Replicon: chromosome
Accession: NZ_CP110313 Location: 5072497..5145526 Organism: Xanthomonas phaseoli pv. phaseoli strain BB007a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM954_RS22090 (OM954_22090) | 5067637..5068992 | + | 1356 | WP_082331124.1 | PrgH/EprH family type III secretion apparatus protein | - |
| OM954_RS22095 (OM954_22095) | 5069025..5069294 | + | 270 | WP_046735986.1 | type III secretion system needle filament subunit SctF | - |
| OM954_RS22100 (OM954_22100) | 5069360..5069644 | + | 285 | WP_039571032.1 | type III secretion system inner rod subunit SctI | - |
| OM954_RS22105 (OM954_22105) | 5069651..5070532 | + | 882 | WP_127446628.1 | type III secretion inner membrane ring lipoprotein SctJ | - |
| OM954_RS22110 (OM954_22110) | 5070529..5071125 | + | 597 | WP_080949130.1 | hypothetical protein | - |
| OM954_RS22115 (OM954_22115) | 5071097..5071771 | + | 675 | WP_039571029.1 | hypothetical protein | - |
| OM954_RS22120 (OM954_22120) | 5071768..5072001 | + | 234 | WP_039571027.1 | hypothetical protein | - |
| OM954_RS22125 (OM954_22125) | 5072183..5072497 | + | 315 | WP_039571026.1 | DUF1153 domain-containing protein | - |
| OM954_RS22130 (OM954_22130) | 5072497..5073312 | + | 816 | WP_039571024.1 | IS3 family transposase ISKpn40 | Transposase |
| OM954_RS22135 (OM954_22135) | 5073421..5073642 | + | 222 | WP_127446629.1 | hypothetical protein | - |
| OM954_RS22140 (OM954_22140) | 5074781..5075071 | + | 291 | WP_127446630.1 | hypothetical protein | - |
| OM954_RS22145 (OM954_22145) | 5075149..5075409 | + | 261 | WP_039575117.1 | hypothetical protein | - |
| OM954_RS22150 (OM954_22150) | 5075399..5076634 | + | 1236 | WP_039575118.1 | hypothetical protein ; Integrase | Integrase |
| OM954_RS22155 (OM954_22155) | 5076842..5077861 | + | 1020 | WP_236493843.1 | hypothetical protein | - |
| OM954_RS22160 (OM954_22160) | 5078154..5079380 | - | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| OM954_RS22165 (OM954_22165) | 5079521..5079907 | - | 387 | WP_229006711.1 | hypothetical protein | - |
| OM954_RS22170 (OM954_22170) | 5080344..5080751 | + | 408 | WP_127446631.1 | hypothetical protein | - |
| OM954_RS22175 (OM954_22175) | 5080710..5082245 | - | 1536 | WP_080948716.1 | MASE1 domain-containing protein | - |
| OM954_RS22180 (OM954_22180) | 5082620..5083360 | + | 741 | WP_150115861.1 | hypothetical protein | - |
| OM954_RS22185 (OM954_22185) | 5083380..5083832 | + | 453 | WP_039575123.1 | HD domain-containing protein | - |
| OM954_RS22190 (OM954_22190) | 5084310..5084879 | - | 570 | WP_074052307.1 | hypothetical protein | - |
| OM954_RS22195 (OM954_22195) | 5084896..5085384 | - | 489 | WP_046735948.1 | DUF6283 family protein | - |
| OM954_RS22200 (OM954_22200) | 5085914..5086651 | - | 738 | WP_039574675.1 | hypothetical protein | - |
| OM954_RS22205 (OM954_22205) | 5086656..5087678 | - | 1023 | WP_127447083.1 | conjugal transfer protein TraN | - |
| OM954_RS22210 (OM954_22210) | 5087818..5088801 | + | 984 | WP_022557821.1 | IS5 family transposase ISXfu1 | Transposase |
| OM954_RS22215 (OM954_22215) | 5088850..5090076 | - | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| OM954_RS22220 (OM954_22220) | 5090242..5091006 | - | 765 | WP_127446633.1 | hypothetical protein | - |
| OM954_RS22225 (OM954_22225) | 5091023..5092180 | - | 1158 | WP_074052150.1 | TraU family protein | - |
| OM954_RS22230 (OM954_22230) | 5092177..5093496 | - | 1320 | WP_039575264.1 | TrbC family F-type conjugative pilus assembly protein | - |
| OM954_RS22235 (OM954_22235) | 5093490..5094011 | - | 522 | WP_127446636.1 | S26 family signal peptidase | - |
| OM954_RS22240 (OM954_22240) | 5094008..5094244 | - | 237 | WP_046736092.1 | hypothetical protein | - |
| OM954_RS22245 (OM954_22245) | 5094282..5094431 | + | 150 | Protein_4360 | IS3 family transposase ISXac3 | Transposase |
| OM954_RS22250 (OM954_22250) | 5094404..5095426 | + | 1023 | WP_236493351.1 | IS3 family transposase ISXac3 | Transposase |
| OM954_RS22255 (OM954_22255) | 5095557..5095883 | - | 327 | WP_264685099.1 | hypothetical protein | - |
| OM954_RS22265 (OM954_22265) | 5097077..5099188 | - | 2112 | WP_264685100.1 | TraC family protein | - |
| OM954_RS22270 (OM954_22270) | 5099207..5099575 | - | 369 | WP_039575799.1 | TraA family conjugative transfer protein | - |
| OM954_RS22275 (OM954_22275) | 5099594..5100283 | - | 690 | WP_127446637.1 | TraV family lipoprotein | - |
| OM954_RS22280 (OM954_22280) | 5100356..5101396 | - | 1041 | WP_160300329.1 | TraB/VirB10 family protein | - |
| OM954_RS22285 (OM954_22285) | 5101580..5102667 | + | 1088 | WP_087944778.1 | IS3 family transposase ISXac2 | Transposase |
| OM954_RS22290 (OM954_22290) | 5102706..5102948 | + | 243 | Protein_4369 | restriction endonuclease | - |
| OM954_RS22300 (OM954_22300) | 5104129..5104422 | - | 294 | WP_143707755.1 | hypothetical protein | - |
| OM954_RS22305 (OM954_22305) | 5104446..5104757 | - | 312 | WP_052756667.1 | hypothetical protein | - |
| OM954_RS22310 (OM954_22310) | 5104750..5105355 | - | 606 | WP_127447084.1 | hypothetical protein | - |
| OM954_RS22315 (OM954_22315) | 5105539..5105730 | - | 192 | WP_080948735.1 | hypothetical protein | - |
| OM954_RS22320 (OM954_22320) | 5106149..5109796 | - | 3648 | WP_039574563.1 | urea carboxylase | - |
| OM954_RS22325 (OM954_22325) | 5109880..5111679 | - | 1800 | WP_039574561.1 | allophanate hydrolase | - |
| OM954_RS22330 (OM954_22330) | 5112029..5112505 | - | 477 | WP_039574558.1 | nuclear transport factor 2 family protein | - |
| OM954_RS22335 (OM954_22335) | 5112569..5113138 | - | 570 | WP_039574571.1 | TetR family transcriptional regulator | - |
| OM954_RS22340 (OM954_22340) | 5113255..5113827 | - | 573 | WP_017158948.1 | TetR/AcrR family transcriptional regulator | - |
| OM954_RS22345 (OM954_22345) | 5113912..5114655 | + | 744 | WP_039574556.1 | Glucose 1-dehydrogenase | VF |
| OM954_RS22350 (OM954_22350) | 5115021..5115539 | - | 519 | WP_039574553.1 | hypothetical protein | - |
| OM954_RS22355 (OM954_22355) | 5115967..5116317 | - | 351 | WP_236493384.1 | hypothetical protein | - |
| OM954_RS22360 (OM954_22360) | 5116532..5116864 | + | 333 | WP_003482333.1 | hypothetical protein | - |
| OM954_RS22370 (OM954_22370) | 5117179..5119104 | + | 1926 | WP_039574551.1 | M61 family metallopeptidase | - |
| OM954_RS22375 (OM954_22375) | 5119172..5119351 | + | 180 | WP_039574549.1 | hypothetical protein | - |
| OM954_RS22380 (OM954_22380) | 5119454..5120842 | - | 1389 | WP_039574546.1 | type III secretion system effector XopQ | - |
| OM954_RS22385 (OM954_22385) | 5121197..5121487 | - | 291 | WP_264685101.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| OM954_RS22390 (OM954_22390) | 5121505..5121618 | - | 114 | WP_017156024.1 | hypothetical protein | Toxin Detail |
| OM954_RS22395 (OM954_22395) | 5121615..5121788 | - | 174 | WP_201443182.1 | hypothetical protein | - |
| OM954_RS22400 (OM954_22400) | 5121883..5124390 | - | 2508 | WP_046834789.1 | AAA family ATPase | - |
| OM954_RS22405 (OM954_22405) | 5124578..5128564 | - | 3987 | WP_039569010.1 | exodeoxyribonuclease V subunit beta | - |
| OM954_RS22410 (OM954_22410) | 5128561..5131965 | - | 3405 | WP_039569011.1 | exodeoxyribonuclease V subunit gamma | - |
| OM954_RS22415 (OM954_22415) | 5132318..5137057 | - | 4740 | WP_264685147.1 | putative Ig domain-containing protein | - |
| OM954_RS22420 (OM954_22420) | 5137355..5137906 | + | 552 | WP_017165353.1 | tail fiber protein | - |
| OM954_RS22425 (OM954_22425) | 5137954..5138481 | + | 528 | WP_039569016.1 | tail fiber protein | - |
| OM954_RS22430 (OM954_22430) | 5138541..5139076 | + | 536 | Protein_4396 | tail fiber protein | - |
| OM954_RS22435 (OM954_22435) | 5139086..5139634 | + | 549 | WP_039569019.1 | hypothetical protein | VF |
| OM954_RS22440 (OM954_22440) | 5139653..5139940 | - | 288 | WP_017158959.1 | hypothetical protein | - |
| OM954_RS22445 (OM954_22445) | 5140322..5141116 | + | 795 | WP_017156015.1 | Intermembrane phospholipid transport system ATP-binding protein MlaF | VF |
| OM954_RS22450 (OM954_22450) | 5141116..5141865 | + | 750 | WP_011349188.1 | MlaE family lipid ABC transporter permease subunit | - |
| OM954_RS22455 (OM954_22455) | 5141877..5142422 | + | 546 | WP_005912377.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| OM954_RS22460 (OM954_22460) | 5142419..5143081 | + | 663 | WP_011349189.1 | ABC transporter substrate-binding protein | - |
| OM954_RS22465 (OM954_22465) | 5143071..5143361 | + | 291 | WP_039569023.1 | STAS domain-containing protein | - |
| OM954_RS22470 (OM954_22470) | 5143372..5144427 | + | 1056 | WP_039569025.1 | VacJ family lipoprotein | - |
| OM954_RS22480 (OM954_22480) | 5145980..5146525 | - | 546 | WP_039571216.1 | glutathione peroxidase | - |
| OM954_RS22485 (OM954_22485) | 5146679..5147056 | - | 378 | WP_039571219.1 | hypothetical protein | - |
| OM954_RS22490 (OM954_22490) | 5147272..5148804 | - | 1533 | WP_180301640.1 | DNA recombination protein RmuC | - |
| OM954_RS22495 (OM954_22495) | 5149033..5150040 | - | 1008 | WP_039571231.1 | zinc-binding alcohol dehydrogenase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|