MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 69156 bp
Accession: NZ_CP110309 Location: 4957173..5026328 Organism: Xanthomonas phaseoli pv. phaseoli strain CFBP 7423 Replicon: chromosome
Accession: NZ_CP110309 Location: 4957173..5026328 Organism: Xanthomonas phaseoli pv. phaseoli strain CFBP 7423 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM947_RS21415 (OM947_21415) | 4952331..4953668 | + | 1338 | WP_080950358.1 | PrgH/EprH family type III secretion apparatus protein | - |
| OM947_RS21420 (OM947_21420) | 4953701..4953970 | + | 270 | WP_046735986.1 | type III secretion system needle filament subunit SctF | - |
| OM947_RS21425 (OM947_21425) | 4954036..4954320 | + | 285 | WP_039571032.1 | type III secretion system inner rod subunit SctI | - |
| OM947_RS21430 (OM947_21430) | 4954327..4955208 | + | 882 | WP_146001367.1 | type III secretion inner membrane ring lipoprotein SctJ | - |
| OM947_RS21435 (OM947_21435) | 4955205..4955801 | + | 597 | WP_080949130.1 | hypothetical protein | - |
| OM947_RS21440 (OM947_21440) | 4955773..4956447 | + | 675 | WP_039571029.1 | hypothetical protein | - |
| OM947_RS21445 (OM947_21445) | 4956447..4956677 | + | 231 | WP_160300315.1 | hypothetical protein | - |
| OM947_RS21450 (OM947_21450) | 4956859..4957173 | + | 315 | WP_039571026.1 | DUF1153 domain-containing protein | - |
| OM947_RS21455 (OM947_21455) | 4957173..4957988 | + | 816 | WP_039571024.1 | IS3 family transposase ISKpn40 | Transposase |
| OM947_RS21460 (OM947_21460) | 4958097..4958318 | + | 222 | WP_127446629.1 | hypothetical protein | - |
| OM947_RS21465 (OM947_21465) | 4959457..4959747 | + | 291 | WP_127446630.1 | hypothetical protein | - |
| OM947_RS21470 (OM947_21470) | 4959825..4960085 | + | 261 | WP_039575117.1 | hypothetical protein | - |
| OM947_RS21475 (OM947_21475) | 4960075..4961310 | + | 1236 | WP_039583738.1 | hypothetical protein ; Integrase | Integrase |
| OM947_RS21480 (OM947_21480) | 4961518..4962537 | + | 1020 | WP_236493582.1 | hypothetical protein | - |
| OM947_RS21485 (OM947_21485) | 4962860..4963246 | - | 387 | WP_229006711.1 | hypothetical protein | - |
| OM947_RS21490 (OM947_21490) | 4963683..4964090 | + | 408 | WP_127446631.1 | hypothetical protein | - |
| OM947_RS21495 (OM947_21495) | 4964049..4965584 | - | 1536 | WP_080948716.1 | MASE1 domain-containing protein | - |
| OM947_RS21500 (OM947_21500) | 4965959..4966699 | + | 741 | WP_150115861.1 | hypothetical protein | - |
| OM947_RS21505 (OM947_21505) | 4966719..4967171 | + | 453 | WP_039575123.1 | HD domain-containing protein | - |
| OM947_RS21510 (OM947_21510) | 4967649..4968218 | - | 570 | WP_074052307.1 | hypothetical protein | - |
| OM947_RS21515 (OM947_21515) | 4968235..4968723 | - | 489 | WP_046735948.1 | DUF6283 family protein | - |
| OM947_RS21520 (OM947_21520) | 4969253..4969990 | - | 738 | WP_039574675.1 | hypothetical protein | - |
| OM947_RS21525 (OM947_21525) | 4969995..4971017 | - | 1023 | WP_127447083.1 | conjugal transfer protein TraN | - |
| OM947_RS21530 (OM947_21530) | 4971157..4972140 | + | 984 | WP_022557821.1 | IS5 family transposase ISXfu1 | Transposase |
| OM947_RS21535 (OM947_21535) | 4972244..4973008 | - | 765 | WP_127446633.1 | hypothetical protein | - |
| OM947_RS21540 (OM947_21540) | 4973025..4974182 | - | 1158 | WP_074052150.1 | TraU family protein | - |
| OM947_RS21545 (OM947_21545) | 4974179..4975456 | - | 1278 | WP_157926377.1 | TrbC family F-type conjugative pilus assembly protein | - |
| OM947_RS21550 (OM947_21550) | 4975492..4976013 | - | 522 | WP_127446636.1 | S26 family signal peptidase | - |
| OM947_RS21555 (OM947_21555) | 4976010..4976246 | - | 237 | WP_046736092.1 | hypothetical protein | - |
| OM947_RS21560 (OM947_21560) | 4976284..4976433 | + | 150 | Protein_4223 | IS3 family transposase ISXac3 | Transposase |
| OM947_RS21565 (OM947_21565) | 4976406..4977428 | + | 1023 | WP_236493351.1 | IS3 family transposase ISXac3 | Transposase |
| OM947_RS21570 (OM947_21570) | 4977559..4979991 | - | 2433 | WP_039575802.1 | type IV secretion system protein TraC | - |
| OM947_RS21575 (OM947_21575) | 4980010..4980378 | - | 369 | WP_039575799.1 | TraA family conjugative transfer protein | - |
| OM947_RS21580 (OM947_21580) | 4980397..4981086 | - | 690 | WP_127446637.1 | TraV family lipoprotein | - |
| OM947_RS21585 (OM947_21585) | 4981159..4982199 | - | 1041 | WP_160300329.1 | TraB/VirB10 family protein | - |
| OM947_RS21590 (OM947_21590) | 4982382..4983469 | + | 1088 | WP_087944778.1 | IS3 family transposase ISXac2 | Transposase |
| OM947_RS21595 (OM947_21595) | 4983508..4983750 | + | 243 | Protein_4230 | restriction endonuclease | - |
| OM947_RS21605 (OM947_21605) | 4984931..4985224 | - | 294 | WP_143707755.1 | hypothetical protein | - |
| OM947_RS21610 (OM947_21610) | 4985248..4985559 | - | 312 | WP_052756667.1 | hypothetical protein | - |
| OM947_RS21615 (OM947_21615) | 4985552..4986259 | - | 708 | WP_127446638.1 | hypothetical protein | - |
| OM947_RS21620 (OM947_21620) | 4986341..4986532 | - | 192 | WP_080948735.1 | hypothetical protein | - |
| OM947_RS21625 (OM947_21625) | 4986951..4990598 | - | 3648 | WP_039574563.1 | urea carboxylase | - |
| OM947_RS21630 (OM947_21630) | 4990682..4992481 | - | 1800 | WP_039574561.1 | allophanate hydrolase | - |
| OM947_RS21635 (OM947_21635) | 4992831..4993307 | - | 477 | WP_039574558.1 | nuclear transport factor 2 family protein | - |
| OM947_RS21640 (OM947_21640) | 4993371..4993940 | - | 570 | WP_039574571.1 | TetR family transcriptional regulator | - |
| OM947_RS21645 (OM947_21645) | 4994057..4994629 | - | 573 | WP_017158948.1 | TetR/AcrR family transcriptional regulator | - |
| OM947_RS21650 (OM947_21650) | 4994738..4995457 | + | 720 | WP_201417375.1 | Glucose 1-dehydrogenase | VF |
| OM947_RS21655 (OM947_21655) | 4995823..4996341 | - | 519 | WP_039574553.1 | hypothetical protein | - |
| OM947_RS21660 (OM947_21660) | 4996769..4997119 | - | 351 | WP_236493384.1 | hypothetical protein | - |
| OM947_RS21665 (OM947_21665) | 4997334..4997666 | + | 333 | WP_003482333.1 | hypothetical protein | - |
| OM947_RS21675 (OM947_21675) | 4997981..4999906 | + | 1926 | WP_039574551.1 | M61 family metallopeptidase | - |
| OM947_RS21680 (OM947_21680) | 4999974..5000153 | + | 180 | WP_039574549.1 | hypothetical protein | - |
| OM947_RS21685 (OM947_21685) | 5000256..5001644 | - | 1389 | WP_039574546.1 | type III secretion system effector XopQ | - |
| OM947_RS21690 (OM947_21690) | 5001999..5002289 | - | 291 | WP_017156025.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| OM947_RS21695 (OM947_21695) | 5002307..5002420 | - | 114 | WP_017156024.1 | hypothetical protein | Toxin Detail |
| OM947_RS21700 (OM947_21700) | 5002685..5005192 | - | 2508 | WP_046834789.1 | AAA family ATPase | - |
| OM947_RS21705 (OM947_21705) | 5005380..5009366 | - | 3987 | WP_039569010.1 | exodeoxyribonuclease V subunit beta | - |
| OM947_RS21710 (OM947_21710) | 5009363..5012767 | - | 3405 | WP_039569011.1 | exodeoxyribonuclease V subunit gamma | - |
| OM947_RS21715 (OM947_21715) | 5013120..5017859 | - | 4740 | WP_039569012.1 | putative Ig domain-containing protein | - |
| OM947_RS21720 (OM947_21720) | 5018157..5018708 | + | 552 | WP_017165353.1 | tail fiber protein | - |
| OM947_RS21725 (OM947_21725) | 5018756..5019283 | + | 528 | WP_039569016.1 | tail fiber protein | - |
| OM947_RS21730 (OM947_21730) | 5019343..5019878 | + | 536 | Protein_4256 | tail fiber protein | - |
| OM947_RS21735 (OM947_21735) | 5019888..5020436 | + | 549 | WP_039569019.1 | hypothetical protein | VF |
| OM947_RS21740 (OM947_21740) | 5020455..5020742 | - | 288 | WP_017158959.1 | hypothetical protein | - |
| OM947_RS21745 (OM947_21745) | 5021124..5021918 | + | 795 | WP_017156015.1 | Intermembrane phospholipid transport system ATP-binding protein MlaF | VF |
| OM947_RS21750 (OM947_21750) | 5021918..5022667 | + | 750 | WP_011349188.1 | MlaE family lipid ABC transporter permease subunit | - |
| OM947_RS21755 (OM947_21755) | 5022679..5023224 | + | 546 | WP_005912377.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| OM947_RS21760 (OM947_21760) | 5023221..5023883 | + | 663 | WP_011349189.1 | ABC transporter substrate-binding protein | - |
| OM947_RS21765 (OM947_21765) | 5023873..5024163 | + | 291 | WP_039569023.1 | STAS domain-containing protein | - |
| OM947_RS21770 (OM947_21770) | 5024174..5025229 | + | 1056 | WP_039569025.1 | VacJ family lipoprotein | - |
| OM947_RS21780 (OM947_21780) | 5026585..5026752 | - | 168 | WP_157926379.1 | hypothetical protein | - |
| OM947_RS21785 (OM947_21785) | 5026783..5027328 | - | 546 | WP_039583607.1 | glutathione peroxidase | - |
| OM947_RS21790 (OM947_21790) | 5027482..5027859 | - | 378 | WP_039571219.1 | hypothetical protein | - |
| OM947_RS21795 (OM947_21795) | 5028075..5029607 | - | 1533 | WP_180301640.1 | DNA recombination protein RmuC | - |
| OM947_RS21800 (OM947_21800) | 5029836..5030843 | - | 1008 | WP_039571231.1 | zinc-binding alcohol dehydrogenase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|