MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57068 bp
Accession: NZ_CP110300 Location: 1..57068 Organism: Xanthomonas citri pv. fuscans strain BRM48906 Replicon: plasmid pA
Accession: NZ_CP110300 Location: 1..57068 Organism: Xanthomonas citri pv. fuscans strain BRM48906 Replicon: plasmid pA
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM948_RS22260 (OM948_22260) | 481..690 | - | 210 | WP_017164018.1 | helix-turn-helix transcriptional regulator | - |
| OM948_RS22265 (OM948_22265) | 1393..2211 | - | 819 | WP_039587854.1 | hypothetical protein | - |
| OM948_RS22270 (OM948_22270) | 2785..3174 | - | 390 | WP_039587855.1 | hypothetical protein | - |
| OM948_RS22275 (OM948_22275) | 3317..3763 | - | 447 | WP_039572194.1 | avidin/streptavidin family protein | - |
| OM948_RS22280 (OM948_22280) | 4145..5371 | - | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| OM948_RS22285 (OM948_22285) | 5403..5714 | + | 312 | WP_099802907.1 | hypothetical protein | - |
| OM948_RS22290 (OM948_22290) | 5880..6419 | - | 540 | WP_022557742.1 | plasmid pRiA4b ORF-3 family protein | - |
| OM948_RS22295 (OM948_22295) | 6452..6943 | - | 492 | WP_017171863.1 | hypothetical protein | - |
| OM948_RS22300 (OM948_22300) | 6940..8928 | - | 1989 | WP_227479507.1 | Conjugal transfer protein TraG | VF |
| OM948_RS22305 (OM948_22305) | 8996..11950 | - | 2955 | WP_227479506.1 | hypothetical protein | Relaxase |
| OM948_RS22310 (OM948_22310) | 12237..12827 | - | 591 | WP_052756669.1 | Type IV secretion system protein virB1 | VF |
| OM948_RS22315 (OM948_22315) | 12820..13416 | - | 597 | WP_080948837.1 | S26 family signal peptidase | - |
| OM948_RS22320 (OM948_22320) | 13421..13885 | - | 465 | WP_022557748.1 | DUF2840 domain-containing protein | - |
| OM948_RS22325 (OM948_22325) | 14129..14464 | - | 336 | WP_039572180.1 | hypothetical protein | - |
| OM948_RS22330 (OM948_22330) | 14461..15096 | - | 636 | WP_039572177.1 | ParA family partition ATPase | - |
| OM948_RS22335 (OM948_22335) | 15168..15506 | + | 339 | WP_099859120.1 | hypothetical protein | - |
| OM948_RS22340 (OM948_22340) | 16114..16935 | - | 822 | WP_099802905.1 | hypothetical protein | - |
| OM948_RS22345 (OM948_22345) | 17289..17873 | - | 585 | WP_022557751.1 | DUF6012 family protein | - |
| OM948_RS22350 (OM948_22350) | 17985..18329 | - | 345 | WP_022557752.1 | hypothetical protein | - |
| OM948_RS22355 (OM948_22355) | 18557..18784 | - | 228 | WP_022557753.1 | hypothetical protein | - |
| OM948_RS22360 (OM948_22360) | 18836..19108 | - | 273 | WP_022557754.1 | hypothetical protein | - |
| OM948_RS22365 (OM948_22365) | 19365..23381 | + | 4017 | WP_099802904.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| OM948_RS22370 (OM948_22370) | 23448..23819 | - | 372 | WP_022557717.1 | hypothetical protein | - |
| OM948_RS22375 (OM948_22375) | 23946..24344 | - | 399 | WP_039731964.1 | hypothetical protein | - |
| OM948_RS22380 (OM948_22380) | 24923..25198 | - | 276 | WP_022557719.1 | hypothetical protein | - |
| OM948_RS22385 (OM948_22385) | 25758..26081 | - | 324 | WP_022557721.1 | hypothetical protein | - |
| OM948_RS22390 (OM948_22390) | 27403..28011 | + | 609 | WP_040965625.1 | hypothetical protein | - |
| OM948_RS22395 (OM948_22395) | 28048..28728 | - | 681 | WP_234338472.1 | hypothetical protein | - |
| OM948_RS22400 (OM948_22400) | 28670..29236 | - | 567 | WP_022557726.1 | hypothetical protein | - |
| OM948_RS22405 (OM948_22405) | 29277..29738 | - | 462 | WP_039731445.1 | hypothetical protein | - |
| OM948_RS22410 (OM948_22410) | 29917..30774 | - | 858 | WP_033481873.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| OM948_RS22415 (OM948_22415) | 30767..31681 | - | 915 | WP_022557729.1 | hypothetical protein | - |
| OM948_RS22420 (OM948_22420) | 32364..32468 | + | 105 | Protein_33 | type III secretion system effector protein | - |
| OM948_RS22425 (OM948_22425) | 32603..33655 | + | 1053 | WP_022557730.1 | type III secretion system YopJ family effector AvrBsT | - |
| OM948_RS22430 (OM948_22430) | 34939..35187 | - | 249 | WP_042826723.1 | hypothetical protein | - |
| OM948_RS22435 (OM948_22435) | 35277..36235 | - | 959 | Protein_36 | IS3 family transposase ISXcd1 | Transposase |
| OM948_RS22440 (OM948_22440) | 36268..39297 | - | 3030 | WP_022560486.1 | Tn3 family transposase ISPsy42 | Transposase |
| OM948_RS22445 (OM948_22445) | 39294..39887 | - | 594 | WP_022560487.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| OM948_RS22450 (OM948_22450) | 40099..40353 | + | 255 | WP_022557731.1 | plasmid stability protein | Antitoxin Detail |
| OM948_RS22455 (OM948_22455) | 40350..40766 | + | 417 | WP_022557732.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| OM948_RS22460 (OM948_22460) | 40780..41334 | + | 555 | WP_033482006.1 | plasmid pRiA4b ORF-3 family protein | - |
| OM948_RS22465 (OM948_22465) | 41409..41546 | - | 138 | Protein_42 | IS3 family transposase ISXcd1 | Transposase |
| OM948_RS22470 (OM948_22470) | 41595..42143 | - | 549 | WP_022557734.1 | DNA topoisomerase | - |
| OM948_RS22475 (OM948_22475) | 42298..43590 | - | 1293 | WP_033481893.1 | M12 family metallo-peptidase | - |
| OM948_RS22480 (OM948_22480) | 43717..45036 | - | 1320 | WP_022557736.1 | right-handed parallel beta-helix repeat-containing protein | - |
| OM948_RS22485 (OM948_22485) | 45411..46265 | - | 855 | WP_022557737.1 | DNA topoisomerase | - |
| OM948_RS22490 (OM948_22490) | 46267..46515 | - | 249 | WP_033481882.1 | hypothetical protein | - |
| OM948_RS22495 (OM948_22495) | 46588..46827 | - | 240 | WP_005997461.1 | hypothetical protein | - |
| OM948_RS22500 (OM948_22500) | 46838..47146 | - | 309 | WP_223842595.1 | hypothetical protein | - |
| OM948_RS22505 (OM948_22505) | 47217..48569 | - | 1353 | WP_046735872.1 | TrbI/VirB10 family protein | - |
| OM948_RS22510 (OM948_22510) | 48585..49577 | - | 993 | WP_017164024.1 | P-type conjugative transfer protein TrbG | - |
| OM948_RS22515 (OM948_22515) | 49604..50314 | - | 711 | WP_039574290.1 | conjugal transfer protein TrbF | - |
| OM948_RS22520 (OM948_22520) | 50321..51799 | - | 1479 | WP_046735871.1 | P-type conjugative transfer protein TrbL | - |
| OM948_RS22525 (OM948_22525) | 52017..52370 | - | 354 | WP_127446653.1 | hypothetical protein | - |
| OM948_RS22530 (OM948_22530) | 52367..53140 | - | 774 | WP_039570072.1 | conjugal transfer protein | - |
| OM948_RS22535 (OM948_22535) | 53159..55729 | - | 2571 | WP_039570074.1 | DUF853 family protein | - |
| OM948_RS22540 (OM948_22540) | 55796..56062 | - | 267 | WP_227479455.1 | VirB3 family type IV secretion system protein | - |
| OM948_RS22545 (OM948_22545) | 56065..56385 | - | 321 | WP_017162817.1 | TrbC/VirB2 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|