MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57069 bp
Accession: NZ_CP110297 Location: 1..57069 Organism: Xanthomonas citri pv. fuscans strain LNPV 30.30 Replicon: plasmid pA
Accession: NZ_CP110297 Location: 1..57069 Organism: Xanthomonas citri pv. fuscans strain LNPV 30.30 Replicon: plasmid pA
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM946_RS21945 (OM946_21945) | 1..819 | + | 819 | WP_039587854.1 | hypothetical protein | - |
| OM946_RS21950 (OM946_21950) | 1522..1731 | + | 210 | WP_017164018.1 | helix-turn-helix transcriptional regulator | - |
| OM946_RS21955 (OM946_21955) | 1816..2820 | + | 1005 | WP_017164019.1 | Putative conjugal transfer protein | VF |
| OM946_RS21960 (OM946_21960) | 2895..3215 | + | 321 | WP_017162817.1 | TrbC/VirB2 family protein | - |
| OM946_RS21965 (OM946_21965) | 3218..3484 | + | 267 | WP_227479455.1 | VirB3 family type IV secretion system protein | - |
| OM946_RS21970 (OM946_21970) | 3551..6121 | + | 2571 | WP_039570074.1 | DUF853 family protein | - |
| OM946_RS21975 (OM946_21975) | 6140..6913 | + | 774 | WP_039570072.1 | conjugal transfer protein | - |
| OM946_RS21980 (OM946_21980) | 6910..7263 | + | 354 | WP_127446653.1 | hypothetical protein | - |
| OM946_RS21985 (OM946_21985) | 7481..8959 | + | 1479 | WP_046735871.1 | P-type conjugative transfer protein TrbL | - |
| OM946_RS21990 (OM946_21990) | 8966..9676 | + | 711 | WP_039574290.1 | conjugal transfer protein TrbF | - |
| OM946_RS21995 (OM946_21995) | 9703..10695 | + | 993 | WP_017164024.1 | P-type conjugative transfer protein TrbG | - |
| OM946_RS22000 (OM946_22000) | 10711..12063 | + | 1353 | WP_046735872.1 | TrbI/VirB10 family protein | - |
| OM946_RS22005 (OM946_22005) | 12254..12442 | + | 189 | WP_228329193.1 | hypothetical protein | - |
| OM946_RS22010 (OM946_22010) | 12453..12692 | + | 240 | WP_005997461.1 | hypothetical protein | - |
| OM946_RS22015 (OM946_22015) | 12765..13013 | + | 249 | WP_033481882.1 | hypothetical protein | - |
| OM946_RS22020 (OM946_22020) | 13015..13869 | + | 855 | WP_022557737.1 | DNA topoisomerase | - |
| OM946_RS22025 (OM946_22025) | 14244..15563 | + | 1320 | WP_022557736.1 | right-handed parallel beta-helix repeat-containing protein | - |
| OM946_RS22030 (OM946_22030) | 15690..16982 | + | 1293 | WP_033481893.1 | M12 family metallo-peptidase | - |
| OM946_RS22035 (OM946_22035) | 17137..17685 | + | 549 | WP_022557734.1 | DNA topoisomerase | - |
| OM946_RS22040 (OM946_22040) | 17734..17871 | + | 138 | Protein_19 | IS3 family transposase ISXcd1 | Transposase |
| OM946_RS22045 (OM946_22045) | 17946..18500 | - | 555 | WP_033482006.1 | plasmid pRiA4b ORF-3 family protein | - |
| OM946_RS22050 (OM946_22050) | 18514..18930 | - | 417 | WP_022557732.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| OM946_RS22055 (OM946_22055) | 18927..19181 | - | 255 | WP_022557731.1 | plasmid stability protein | Antitoxin Detail |
| OM946_RS22060 (OM946_22060) | 19393..19986 | + | 594 | WP_022560487.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| OM946_RS22065 (OM946_22065) | 19983..23012 | + | 3030 | WP_022560486.1 | Tn3 family transposase ISPsy42 | Transposase |
| OM946_RS22070 (OM946_22070) | 23045..24003 | + | 959 | Protein_25 | IS3 family transposase ISXcd1 | Transposase |
| OM946_RS22075 (OM946_22075) | 24093..24341 | + | 249 | WP_042826723.1 | hypothetical protein | - |
| OM946_RS22080 (OM946_22080) | 25625..26677 | - | 1053 | WP_022557730.1 | type III secretion system YopJ family effector AvrBsT | - |
| OM946_RS22085 (OM946_22085) | 26812..26916 | - | 105 | Protein_28 | type III secretion system effector protein | - |
| OM946_RS22090 (OM946_22090) | 27599..28513 | + | 915 | WP_022557729.1 | hypothetical protein | - |
| OM946_RS22095 (OM946_22095) | 28506..29363 | + | 858 | WP_033481873.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| OM946_RS22100 (OM946_22100) | 29542..30003 | + | 462 | WP_039731445.1 | hypothetical protein | - |
| OM946_RS22105 (OM946_22105) | 30044..30610 | + | 567 | WP_022557726.1 | hypothetical protein | - |
| OM946_RS22110 (OM946_22110) | 30759..31232 | + | 474 | WP_234346901.1 | hypothetical protein | - |
| OM946_RS22115 (OM946_22115) | 31269..31877 | - | 609 | WP_040965625.1 | hypothetical protein | - |
| OM946_RS22120 (OM946_22120) | 33199..33522 | + | 324 | WP_022557721.1 | hypothetical protein | - |
| OM946_RS22125 (OM946_22125) | 34082..34357 | + | 276 | WP_022557719.1 | hypothetical protein | - |
| OM946_RS22130 (OM946_22130) | 34936..35334 | + | 399 | WP_039731964.1 | hypothetical protein | - |
| OM946_RS22135 (OM946_22135) | 35461..35832 | + | 372 | WP_022557717.1 | hypothetical protein | - |
| OM946_RS22140 (OM946_22140) | 35899..39915 | - | 4017 | WP_099802904.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| OM946_RS22145 (OM946_22145) | 40172..40444 | + | 273 | WP_022557754.1 | hypothetical protein | - |
| OM946_RS22150 (OM946_22150) | 40496..40723 | + | 228 | WP_022557753.1 | hypothetical protein | - |
| OM946_RS22155 (OM946_22155) | 40951..41295 | + | 345 | WP_022557752.1 | hypothetical protein | - |
| OM946_RS22160 (OM946_22160) | 41407..41991 | + | 585 | WP_022557751.1 | DUF6012 family protein | - |
| OM946_RS22165 (OM946_22165) | 42345..43166 | + | 822 | WP_099802905.1 | hypothetical protein | - |
| OM946_RS22170 (OM946_22170) | 43774..44112 | - | 339 | WP_099859120.1 | hypothetical protein | - |
| OM946_RS22175 (OM946_22175) | 44184..44819 | + | 636 | WP_039572177.1 | ParA family partition ATPase | - |
| OM946_RS22180 (OM946_22180) | 44816..45151 | + | 336 | WP_039572180.1 | hypothetical protein | - |
| OM946_RS22185 (OM946_22185) | 45395..45859 | + | 465 | WP_022557748.1 | DUF2840 domain-containing protein | - |
| OM946_RS22190 (OM946_22190) | 45864..46460 | + | 597 | WP_080948837.1 | S26 family signal peptidase | - |
| OM946_RS22195 (OM946_22195) | 46453..47043 | + | 591 | WP_052756669.1 | Type IV secretion system protein virB1 | VF |
| OM946_RS22200 (OM946_22200) | 47330..50284 | + | 2955 | WP_227479506.1 | hypothetical protein | Relaxase |
| OM946_RS22205 (OM946_22205) | 50364..52340 | + | 1977 | WP_234341882.1 | Conjugal transfer protein TraG | VF |
| OM946_RS22210 (OM946_22210) | 52337..52846 | + | 510 | WP_022557743.1 | hypothetical protein | - |
| OM946_RS22215 (OM946_22215) | 52860..53399 | + | 540 | WP_022557742.1 | plasmid pRiA4b ORF-3 family protein | - |
| OM946_RS22220 (OM946_22220) | 53565..53876 | - | 312 | WP_099802907.1 | hypothetical protein | - |
| OM946_RS22225 (OM946_22225) | 53908..55134 | + | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| OM946_RS22230 (OM946_22230) | 55516..55962 | + | 447 | WP_039572194.1 | avidin/streptavidin family protein | - |
| OM946_RS22235 (OM946_22235) | 56105..56494 | + | 390 | WP_039587855.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|