MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP110198 Location: 1027442..1037868 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75 Replicon: chromosome
Accession: NZ_CP110198 Location: 1027442..1037868 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCK70_RS04920 (1022555) | 1022555..1022935 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| OCK70_RS04925 (1022991) | 1022991..1025558 | - | 2568 | WP_001005807.1 | DNA mismatch repair protein MutS | - |
| OCK70_RS04930 (1025717) | 1025717..1026238 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| OCK70_RS04935 (1026410) | 1026410..1027066 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| OCK70_RS04940 (1027413) | 1027413..1027618 | + | 206 | Protein_969 | IS5 family transposase ISEcl3 | Transposase |
| OCK70_RS04945 (1027691) | 1027691..1028218 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| OCK70_RS04950 (1028215) | 1028215..1028505 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| OCK70_RS04955 (1028775) | 1028775..1028953 | - | 179 | Protein_972 | IS3 family transposase | - |
| OCK70_RS04960 (1029194) | 1029194..1029520 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| OCK70_RS04965 (1029793) | 1029793..1030140 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| OCK70_RS04970 (1030125) | 1030125..1030574 | - | 450 | WP_000381610.1 | membrane protein | - |
| OCK70_RS04975 (1031005) | 1031005..1031448 | - | 444 | WP_000715092.1 | Type 3 secretion system pilotin | VF |
| OCK70_RS04980 (1031905) | 1031905..1032555 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| OCK70_RS04985 (1032552) | 1032552..1034240 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| OCK70_RS04990 (1034237) | 1034237..1035355 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| OCK70_RS04995 (1035380) | 1035380..1037437 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| OCK70_RS05000 (1037461) | 1037461..1037868 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| OCK70_RS05005 (1037865) | 1037865..1039160 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| OCK70_RS05010 (1039138) | 1039138..1039581 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| OCK70_RS05015 (1039581) | 1039581..1040591 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| OCK70_RS05020 (1040591) | 1040591..1041502 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| OCK70_RS05025 (1041492) | 1041492..1042166 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| OCK70_RS05030 (1042192) | 1042192..1042452 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |