MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 125286 bp
Accession: NZ_CP109940 Location: 1809960..1935245 Organism: Streptococcus suis strain ID34572 Replicon: chromosome
Accession: NZ_CP109940 Location: 1809960..1935245 Organism: Streptococcus suis strain ID34572 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHM49_RS08965 (OHM49_08965) | 1804964..1805764 | + | 801 | WP_013730319.1 | ABC transporter ATP-binding protein | - |
| OHM49_RS08970 (OHM49_08970) | 1805761..1806690 | + | 930 | WP_009909659.1 | ABC transporter substrate-binding protein | - |
| OHM49_RS08975 (OHM49_08975) | 1806704..1807729 | + | 1026 | WP_009909658.1 | iron ABC transporter permease | - |
| OHM49_RS08980 (OHM49_08980) | 1807726..1808727 | + | 1002 | WP_024386629.1 | iron ABC transporter permease | - |
| OHM49_RS08985 (OHM49_08985) | 1808746..1809225 | - | 480 | WP_024394378.1 | glutathione peroxidase | - |
| OHM49_RS08990 (OHM49_08990) | 1809239..1809955 | - | 717 | WP_013730318.1 | pseudouridine synthase | - |
| OHM49_RS08995 (OHM49_08995) | 1810094..1811050 | + | 957 | WP_263928780.1 | glutathione S-transferase family protein | - |
| OHM49_RS09000 (OHM49_09000) | 1811228..1811485 | + | 258 | WP_250636740.1 | low temperature requirement protein A | - |
| OHM49_RS09005 (OHM49_09005) | 1811505..1812218 | + | 714 | WP_009909651.1 | low temperature requirement protein A | - |
| OHM49_RS09010 (OHM49_09010) | 1812307..1813572 | - | 1266 | WP_024394377.1 | D-alanyl-lipoteichoic acid biosynthesis protein DltD | - |
| OHM49_RS09015 (OHM49_09015) | 1813565..1813804 | - | 240 | WP_002937198.1 | D-alanyl carrier protein | VF |
| OHM49_RS09020 (OHM49_09020) | 1813847..1815088 | - | 1242 | WP_013730314.1 | hypothetical protein | VF |
| OHM49_RS09025 (OHM49_09025) | 1815085..1816620 | - | 1536 | WP_013730313.1 | D-alanine--poly(phosphoribitol) ligase subunit DltA | - |
| OHM49_RS09030 (OHM49_09030) | 1816637..1816762 | - | 126 | WP_002937209.1 | teichoic acid D-Ala incorporation-associated protein DltX | - |
| OHM49_RS09035 (OHM49_09035) | 1816972..1817819 | + | 848 | WP_263924341.1 | IS630 family transposase | - |
| OHM49_RS09040 (OHM49_09040) | 1818131..1818478 | - | 348 | WP_013730312.1 | hypothetical protein | - |
| OHM49_RS09045 (OHM49_09045) | 1818664..1819044 | - | 381 | WP_013730311.1 | hypothetical protein | - |
| OHM49_RS09050 (OHM49_09050) | 1819476..1819790 | - | 315 | WP_013730310.1 | hypothetical protein | - |
| OHM49_RS09055 (OHM49_09055) | 1820208..1820555 | - | 348 | WP_002937220.1 | hypothetical protein | - |
| OHM49_RS09060 (OHM49_09060) | 1821030..1821734 | - | 705 | WP_002937230.1 | glucosamine-6-phosphate deaminase | - |
| OHM49_RS09065 (OHM49_09065) | 1822082..1823110 | + | 1029 | WP_002937231.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| OHM49_RS09070 (OHM49_09070) | 1823174..1823647 | + | 474 | WP_002937233.1 | arginine repressor | - |
| OHM49_RS09075 (OHM49_09075) | 1824267..1825502 | - | 1236 | Protein_1762 | family 20 glycosylhydrolase | - |
| OHM49_RS09080 (OHM49_09080) | 1826175..1827902 | - | 1728 | Protein_1763 | family 16 glycosylhydrolase | - |
| OHM49_RS09085 (OHM49_09085) | 1828567..1829907 | - | 1341 | WP_024394778.1 | dipeptidase | - |
| OHM49_RS09090 (OHM49_09090) | 1830026..1831528 | - | 1503 | WP_013730305.1 | YfcC family protein | - |
| OHM49_RS09095 (OHM49_09095) | 1831871..1832818 | - | 948 | WP_009909634.1 | carbamate kinase | - |
| OHM49_RS09100 (OHM49_09100) | 1832936..1833949 | - | 1014 | WP_011922164.1 | ornithine carbamoyltransferase | - |
| OHM49_RS09105 (OHM49_09105) | 1833968..1834408 | - | 441 | WP_002941721.1 | GNAT family N-acetyltransferase | - |
| OHM49_RS09110 (OHM49_09110) | 1834408..1835640 | - | 1233 | WP_024383696.1 | arginine deiminase | - |
| OHM49_RS09115 (OHM49_09115) | 1835899..1836594 | - | 696 | WP_014638193.1 | Crp/Fnr family transcriptional regulator | - |
| OHM49_RS09120 (OHM49_09120) | 1837252..1838169 | - | 918 | WP_002937252.1 | DNA-binding protein WhiA | - |
| OHM49_RS09125 (OHM49_09125) | 1838166..1839140 | - | 975 | WP_002937257.1 | YvcK family protein | - |
| OHM49_RS09130 (OHM49_09130) | 1839137..1840024 | - | 888 | WP_002937261.1 | RNase adapter RapZ | - |
| OHM49_RS09135 (OHM49_09135) | 1840046..1840423 | - | 378 | WP_013730303.1 | RidA family protein | - |
| OHM49_RS09140 (OHM49_09140) | 1840607..1841926 | - | 1320 | WP_002937278.1 | MATE family efflux transporter | - |
| OHM49_RS09145 (OHM49_09145) | 1842153..1843499 | - | 1347 | WP_002941729.1 | asparagine--tRNA ligase | - |
| OHM49_RS09150 (OHM49_09150) | 1843514..1844695 | - | 1182 | WP_043033076.1 | pyridoxal phosphate-dependent aminotransferase | - |
| OHM49_RS09155 (OHM49_09155) | 1844692..1845189 | - | 498 | WP_043033075.1 | DUF5590 domain-containing protein | - |
| OHM49_RS09160 (OHM49_09160) | 1845403..1845852 | + | 450 | WP_002938613.1 | MarR family transcriptional regulator | - |
| OHM49_RS09165 (OHM49_09165) | 1845915..1846460 | + | 546 | WP_002941732.1 | NADPH-dependent FMN reductase | - |
| OHM49_RS09170 (OHM49_09170) | 1846560..1847673 | - | 1114 | Protein_1781 | UDP-galactopyranose mutase | VF |
| OHM49_RS09175 (OHM49_09175) | 1847899..1848161 | + | 263 | Protein_1782 | IS5 family transposase IS1515 | Transposase |
| OHM49_RS09180 (OHM49_09180) | 1848267..1850021 | - | 1755 | WP_002938620.1 | hypothetical protein ; Integrase | Integrase |
| OHM49_RS09185 (OHM49_09185) | 1850185..1850346 | - | 162 | WP_153299043.1 | hypothetical protein | - |
| OHM49_RS09190 (OHM49_09190) | 1850481..1850705 | - | 225 | WP_000284847.1 | helix-turn-helix transcriptional regulator | - |
| OHM49_RS09195 (OHM49_09195) | 1850894..1851781 | - | 888 | WP_000769130.1 | aldose 1-epimerase family protein | - |
| OHM49_RS09200 (OHM49_09200) | 1851804..1852082 | - | 279 | WP_002938623.1 | DUF3884 family protein | - |
| OHM49_RS09205 (OHM49_09205) | 1852107..1853513 | - | 1407 | WP_002938631.1 | 6-phospho-beta-galactosidase | - |
| OHM49_RS09210 (OHM49_09210) | 1853579..1855294 | - | 1716 | WP_002938634.1 | lactose-specific PTS transporter subunit EIIC | - |
| OHM49_RS09215 (OHM49_09215) | 1855294..1855611 | - | 318 | WP_003082802.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| OHM49_RS09220 (OHM49_09220) | 1855639..1856619 | - | 981 | WP_003084249.1 | tagatose-bisphosphate aldolase | - |
| OHM49_RS09225 (OHM49_09225) | 1856622..1857554 | - | 933 | WP_002936379.1 | tagatose-6-phosphate kinase | - |
| OHM49_RS09230 (OHM49_09230) | 1857566..1858081 | - | 516 | WP_002936382.1 | galactose-6-phosphate isomerase subunit LacB | - |
| OHM49_RS09235 (OHM49_09235) | 1858115..1858540 | - | 426 | WP_003084983.1 | galactose-6-phosphate isomerase subunit LacA | - |
| OHM49_RS09240 (OHM49_09240) | 1858777..1859727 | - | 951 | WP_043033073.1 | ROK family glucokinase | - |
| OHM49_RS09245 (OHM49_09245) | 1859908..1860669 | + | 762 | WP_002936387.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| OHM49_RS09250 (OHM49_09250) | 1860678..1861382 | + | 705 | WP_002936389.1 | HAD family hydrolase | - |
| OHM49_RS09255 (OHM49_09255) | 1861426..1863291 | - | 1866 | WP_044674092.1 | SAG1250 family conjugative relaxase | - |
| OHM49_RS09260 (OHM49_09260) | 1863278..1863643 | - | 366 | WP_000263053.1 | plasmid mobilization relaxosome protein MobC | - |
| OHM49_RS09265 (OHM49_09265) | 1863653..1864012 | - | 360 | WP_002936401.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| OHM49_RS09270 (OHM49_09270) | 1864353..1864595 | - | 243 | WP_002936408.1 | hypothetical protein | - |
| OHM49_RS09275 (OHM49_09275) | 1864649..1865716 | - | 1068 | WP_002936409.1 | Abi family protein | - |
| OHM49_RS09280 (OHM49_09280) | 1865894..1866190 | - | 297 | WP_061745663.1 | hypothetical protein | - |
| OHM49_RS09285 (OHM49_09285) | 1866240..1866629 | - | 390 | WP_000048066.1 | DUF5945 family protein | - |
| OHM49_RS09290 (OHM49_09290) | 1866626..1866853 | - | 228 | WP_000110922.1 | DUF5965 family protein | - |
| OHM49_RS09295 (OHM49_09295) | 1866907..1867983 | - | 1077 | WP_002936424.1 | toprim domain-containing protein | - |
| OHM49_RS09300 (OHM49_09300) | 1868022..1868660 | - | 639 | WP_043028693.1 | hypothetical protein | - |
| OHM49_RS09305 (OHM49_09305) | 1868756..1869046 | - | 291 | WP_263928794.1 | DUF5966 family protein | - |
| OHM49_RS09310 (OHM49_09310) | 1869060..1869359 | - | 300 | WP_000194866.1 | DUF5962 family protein | - |
| OHM49_RS09315 (OHM49_09315) | 1869430..1876254 | - | 6825 | WP_263928793.1 | SNF2-related protein | - |
| OHM49_RS09320 (OHM49_09320) | 1876303..1876854 | - | 552 | WP_014636943.1 | hypothetical protein | - |
| OHM49_RS09325 (OHM49_09325) | 1876838..1877029 | - | 192 | WP_001068448.1 | calcium-binding protein | - |
| OHM49_RS09330 (OHM49_09330) | 1877030..1881925 | - | 4896 | WP_263928792.1 | hypothetical protein | VF |
| OHM49_RS09335 (OHM49_09335) | 1882193..1882828 | - | 636 | WP_024394859.1 | hypothetical protein | - |
| OHM49_RS09340 (OHM49_09340) | 1883406..1884155 | - | 750 | WP_024394858.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| OHM49_RS09345 (OHM49_09345) | 1884170..1885039 | - | 870 | WP_226313481.1 | GHKL domain-containing protein | - |
| OHM49_RS09350 (OHM49_09350) | 1885499..1885654 | - | 156 | WP_000794567.1 | hypothetical protein | - |
| OHM49_RS09355 (OHM49_09355) | 1885676..1886179 | - | 504 | WP_263925393.1 | Lactococcin-G-processing and transport ATP-binding protein LagD | VF |
| OHM49_RS09360 (OHM49_09360) | 1886259..1887263 | + | 1005 | WP_002935211.1 | IS5 family transposase ISSth7 | Transposase |
| OHM49_RS09365 (OHM49_09365) | 1887367..1889022 | - | 1656 | WP_249547177.1 | peptide cleavage/export ABC transporter | - |
| OHM49_RS09370 (OHM49_09370) | 1889225..1889416 | - | 192 | WP_002935101.1 | hypothetical protein | - |
| OHM49_RS09375 (OHM49_09375) | 1889505..1889777 | - | 273 | WP_002935103.1 | DUF3884 family protein | - |
| OHM49_RS09380 (OHM49_09380) | 1889806..1890045 | - | 240 | WP_044674089.1 | hypothetical protein | - |
| OHM49_RS09385 (OHM49_09385) | 1890080..1891123 | - | 1044 | WP_228477119.1 | SPbeta prophage-derived glycosyltransferase SunS | VF |
| OHM49_RS09390 (OHM49_09390) | 1891311..1891472 | - | 162 | WP_002935108.1 | agglutinin receptor | - |
| OHM49_RS09395 (OHM49_09395) | 1891755..1892345 | + | 591 | WP_002935109.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| OHM49_RS09400 (OHM49_09400) | 1892342..1893187 | + | 846 | WP_024394846.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| OHM49_RS09405 (OHM49_09405) | 1893249..1896050 | - | 2802 | WP_014636948.1 | phage tail tip lysozyme | - |
| OHM49_RS09410 (OHM49_09410) | 1896052..1898403 | - | 2352 | WP_029750030.1 | ATPase AAA | - |
| OHM49_RS09415 (OHM49_09415) | 1898360..1898713 | - | 354 | WP_002935113.1 | PrgI family protein | - |
| OHM49_RS09420 (OHM49_09420) | 1898775..1899629 | - | 855 | WP_002935114.1 | conjugal transfer protein TrbL | - |
| OHM49_RS09425 (OHM49_09425) | 1899648..1899890 | - | 243 | WP_001072182.1 | hypothetical protein | - |
| OHM49_RS09430 (OHM49_09430) | 1899908..1901725 | - | 1818 | WP_263925386.1 | type IV secretory system conjugative DNA transfer family protein | - |
| OHM49_RS09435 (OHM49_09435) | 1901725..1902213 | - | 489 | WP_014636953.1 | hypothetical protein | - |
| OHM49_RS09440 (OHM49_09440) | 1902291..1902875 | - | 585 | WP_263925387.1 | CPBP family intramembrane metalloprotease | - |
| OHM49_RS09445 (OHM49_09445) | 1902878..1903111 | - | 234 | WP_002935120.1 | hypothetical protein | - |
| OHM49_RS09450 (OHM49_09450) | 1903120..1903503 | - | 384 | WP_002935121.1 | hypothetical protein | - |
| OHM49_RS09455 (OHM49_09455) | 1903514..1903942 | - | 429 | WP_002935122.1 | hypothetical protein | - |
| OHM49_RS09460 (OHM49_09460) | 1903926..1905281 | - | 1356 | WP_264485016.1 | DNA (cytosine-5-)-methyltransferase | - |
| OHM49_RS09465 (OHM49_09465) | 1905430..1906248 | - | 819 | WP_263925382.1 | replication initiator protein A | - |
| OHM49_RS09470 (OHM49_09470) | 1906245..1906385 | - | 141 | WP_002935125.1 | hypothetical protein | - |
| OHM49_RS09475 (OHM49_09475) | 1906596..1907957 | - | 1362 | WP_024394786.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| OHM49_RS09480 (OHM49_09480) | 1908024..1909346 | - | 1323 | WP_013730298.1 | LCP family protein | - |
| OHM49_RS09485 (OHM49_09485) | 1909358..1910185 | - | 828 | WP_024381706.1 | prephenate dehydratase | - |
| OHM49_RS09490 (OHM49_09490) | 1910176..1910667 | - | 492 | WP_024393608.1 | shikimate kinase | - |
| OHM49_RS09495 (OHM49_09495) | 1910676..1911956 | - | 1281 | WP_014636887.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| OHM49_RS09500 (OHM49_09500) | 1912171..1913523 | + | 1353 | WP_225533320.1 | ATP-binding protein | - |
| OHM49_RS09505 (OHM49_09505) | 1913542..1914450 | + | 909 | WP_225533317.1 | tetratricopeptide repeat protein | - |
| OHM49_RS09510 (OHM49_09510) | 1914434..1915675 | - | 1242 | WP_014636889.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| OHM49_RS09515 (OHM49_09515) | 1915771..1916667 | + | 897 | WP_013730292.1 | Tyrosine recombinase XerC | VF |
| OHM49_RS09520 (OHM49_09520) | 1916699..1916884 | - | 186 | WP_013730291.1 | hypothetical protein | - |
| OHM49_RS09525 (OHM49_09525) | 1916963..1917100 | + | 138 | Protein_1852 | IS110 family transposase | - |
| OHM49_RS09530 (OHM49_09530) | 1917173..1917373 | + | 201 | WP_013730290.1 | IS66 family transposase ISBthe6 | Transposase |
| OHM49_RS09535 (OHM49_09535) | 1917327..1918247 | + | 921 | WP_044675715.1 | IS66 family transposase ISEbi1 | Transposase |
| OHM49_RS09540 (OHM49_09540) | 1918494..1919720 | + | 1227 | WP_248042381.1 | ISL3 family transposase IS1193D | Transposase |
| OHM49_RS09545 (OHM49_09545) | 1919832..1921337 | - | 1506 | WP_044675484.1 | UDP-glucose 6-dehydrogenase | VF |
| OHM49_RS09550 (OHM49_09550) | 1921509..1922924 | - | 1416 | WP_024390814.1 | oligosaccharide flippase family protein | - |
| OHM49_RS09555 (OHM49_09555) | 1922921..1923823 | - | 903 | WP_161944493.1 | glycosyltransferase family A protein | - |
| OHM49_RS09560 (OHM49_09560) | 1923820..1924977 | - | 1158 | WP_044685262.1 | hypothetical protein | - |
| OHM49_RS09565 (OHM49_09565) | 1924974..1925564 | - | 591 | WP_044675422.1 | GNAT family N-acetyltransferase | - |
| OHM49_RS09570 (OHM49_09570) | 1925569..1926462 | - | 894 | WP_024390818.1 | beta-1,6-N-acetylglucosaminyltransferase | - |
| OHM49_RS09575 (OHM49_09575) | 1926539..1927369 | - | 831 | WP_024390819.1 | UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-galactosyltransferase | VF |
| OHM49_RS09580 (OHM49_09580) | 1927362..1928582 | - | 1221 | WP_024390820.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| OHM49_RS09585 (OHM49_09585) | 1928592..1929290 | - | 699 | WP_014636873.1 | UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase | VF |
| OHM49_RS09590 (OHM49_09590) | 1929735..1931561 | - | 1827 | WP_024390822.1 | UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase | VF |
| OHM49_RS09595 (OHM49_09595) | 1931591..1932322 | - | 732 | WP_013730278.1 | Tyrosine-protein phosphatase CpsB | VF |
| OHM49_RS09600 (OHM49_09600) | 1932361..1933047 | - | 687 | WP_013730277.1 | Tyrosine-protein kinase CpsD | VF |
| OHM49_RS09605 (OHM49_09605) | 1933057..1933746 | - | 690 | WP_013730276.1 | putative capsular polysaccharide biosynthesis protein YwqC | VF |
| OHM49_RS09610 (OHM49_09610) | 1933762..1935201 | - | 1440 | WP_013730275.1 | Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU | VF |
| OHM49_RS09615 (OHM49_09615) | 1935331..1936065 | - | 735 | WP_024381470.1 | peroxide stress protein YaaA | - |
| OHM49_RS09620 (OHM49_09620) | 1936188..1937447 | + | 1260 | WP_013730273.1 | PLP-dependent aminotransferase family protein | - |
| OHM49_RS09625 (OHM49_09625) | 1937546..1938397 | - | 852 | WP_014636868.1 | DegV family protein | - |
| OHM49_RS09630 (OHM49_09630) | 1938524..1938928 | + | 405 | WP_011922106.1 | TetR/AcrR family transcriptional regulator | - |
| OHM49_RS09635 (OHM49_09635) | 1938951..1939736 | - | 786 | WP_024394527.1 | pyrroline-5-carboxylate reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|