MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 125268 bp
Accession: NZ_CP109937 Location: 1814695..1939962 Organism: Streptococcus suis strain TRG6 Replicon: chromosome
Accession: NZ_CP109937 Location: 1814695..1939962 Organism: Streptococcus suis strain TRG6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHM52_RS09010 (OHM52_09010) | 1809699..1810499 | + | 801 | WP_013730319.1 | ABC transporter ATP-binding protein | - |
| OHM52_RS09015 (OHM52_09015) | 1810496..1811425 | + | 930 | WP_009909659.1 | ABC transporter substrate-binding protein | - |
| OHM52_RS09020 (OHM52_09020) | 1811439..1812464 | + | 1026 | WP_009909658.1 | iron ABC transporter permease | - |
| OHM52_RS09025 (OHM52_09025) | 1812461..1813462 | + | 1002 | WP_024386629.1 | iron ABC transporter permease | - |
| OHM52_RS09030 (OHM52_09030) | 1813481..1813960 | - | 480 | WP_024394378.1 | glutathione peroxidase | - |
| OHM52_RS09035 (OHM52_09035) | 1813974..1814690 | - | 717 | WP_013730318.1 | pseudouridine synthase | - |
| OHM52_RS09040 (OHM52_09040) | 1814829..1815785 | + | 957 | WP_013730317.1 | glutathione S-transferase family protein | - |
| OHM52_RS09045 (OHM52_09045) | 1815963..1816220 | + | 258 | WP_250636740.1 | low temperature requirement protein A | - |
| OHM52_RS09050 (OHM52_09050) | 1816240..1816953 | + | 714 | WP_009909651.1 | low temperature requirement protein A | - |
| OHM52_RS09055 (OHM52_09055) | 1817042..1818307 | - | 1266 | WP_024394377.1 | D-alanyl-lipoteichoic acid biosynthesis protein DltD | - |
| OHM52_RS09060 (OHM52_09060) | 1818300..1818539 | - | 240 | WP_002937198.1 | D-alanyl carrier protein | VF |
| OHM52_RS09065 (OHM52_09065) | 1818582..1819823 | - | 1242 | WP_013730314.1 | hypothetical protein | VF |
| OHM52_RS09070 (OHM52_09070) | 1819820..1821355 | - | 1536 | WP_013730313.1 | D-alanine--poly(phosphoribitol) ligase subunit DltA | - |
| OHM52_RS09075 (OHM52_09075) | 1821372..1821497 | - | 126 | WP_002937209.1 | teichoic acid D-Ala incorporation-associated protein DltX | - |
| OHM52_RS09080 (OHM52_09080) | 1821707..1822554 | + | 848 | WP_114876550.1 | IS630 family transposase | - |
| OHM52_RS09085 (OHM52_09085) | 1822866..1823213 | - | 348 | WP_013730312.1 | hypothetical protein | - |
| OHM52_RS09090 (OHM52_09090) | 1823399..1823779 | - | 381 | WP_013730311.1 | hypothetical protein | - |
| OHM52_RS09095 (OHM52_09095) | 1824211..1824525 | - | 315 | WP_013730310.1 | hypothetical protein | - |
| OHM52_RS09100 (OHM52_09100) | 1824943..1825290 | - | 348 | WP_002937220.1 | hypothetical protein | - |
| OHM52_RS09105 (OHM52_09105) | 1825765..1826469 | - | 705 | WP_002937230.1 | glucosamine-6-phosphate deaminase | - |
| OHM52_RS09110 (OHM52_09110) | 1826817..1827845 | + | 1029 | WP_002937231.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| OHM52_RS09115 (OHM52_09115) | 1827909..1828382 | + | 474 | WP_002937233.1 | arginine repressor | - |
| OHM52_RS09120 (OHM52_09120) | 1829002..1830237 | - | 1236 | Protein_1771 | family 20 glycosylhydrolase | - |
| OHM52_RS09125 (OHM52_09125) | 1830910..1832637 | - | 1728 | Protein_1772 | family 16 glycosylhydrolase | - |
| OHM52_RS09130 (OHM52_09130) | 1833302..1834642 | - | 1341 | WP_024394778.1 | dipeptidase | - |
| OHM52_RS09135 (OHM52_09135) | 1834761..1836263 | - | 1503 | WP_013730305.1 | YfcC family protein | - |
| OHM52_RS09140 (OHM52_09140) | 1836606..1837553 | - | 948 | WP_009909634.1 | carbamate kinase | - |
| OHM52_RS09145 (OHM52_09145) | 1837671..1838684 | - | 1014 | WP_011922164.1 | ornithine carbamoyltransferase | - |
| OHM52_RS09150 (OHM52_09150) | 1838703..1839143 | - | 441 | WP_002941721.1 | GNAT family N-acetyltransferase | - |
| OHM52_RS09155 (OHM52_09155) | 1839143..1840375 | - | 1233 | WP_024383696.1 | arginine deiminase | - |
| OHM52_RS09160 (OHM52_09160) | 1840634..1841329 | - | 696 | WP_014638193.1 | Crp/Fnr family transcriptional regulator | - |
| OHM52_RS09165 (OHM52_09165) | 1841987..1842904 | - | 918 | WP_002937252.1 | DNA-binding protein WhiA | - |
| OHM52_RS09170 (OHM52_09170) | 1842901..1843875 | - | 975 | WP_002937257.1 | YvcK family protein | - |
| OHM52_RS09175 (OHM52_09175) | 1843872..1844759 | - | 888 | WP_002937261.1 | RNase adapter RapZ | - |
| OHM52_RS09180 (OHM52_09180) | 1844781..1845158 | - | 378 | WP_013730303.1 | RidA family protein | - |
| OHM52_RS09185 (OHM52_09185) | 1845342..1846661 | - | 1320 | WP_002937278.1 | MATE family efflux transporter | - |
| OHM52_RS09190 (OHM52_09190) | 1846888..1848234 | - | 1347 | WP_002941729.1 | asparagine--tRNA ligase | - |
| OHM52_RS09195 (OHM52_09195) | 1848249..1849430 | - | 1182 | WP_043033076.1 | pyridoxal phosphate-dependent aminotransferase | - |
| OHM52_RS09200 (OHM52_09200) | 1849427..1849924 | - | 498 | WP_043033075.1 | DUF5590 domain-containing protein | - |
| OHM52_RS09205 (OHM52_09205) | 1850138..1850587 | + | 450 | WP_002938613.1 | MarR family transcriptional regulator | - |
| OHM52_RS09210 (OHM52_09210) | 1850650..1851195 | + | 546 | WP_002941732.1 | NADPH-dependent FMN reductase | - |
| OHM52_RS09215 (OHM52_09215) | 1851295..1852407 | - | 1113 | WP_043033074.1 | UDP-galactopyranose mutase | VF |
| OHM52_RS09220 (OHM52_09220) | 1852633..1852895 | + | 263 | Protein_1791 | IS5 family transposase IS1515 | Transposase |
| OHM52_RS09225 (OHM52_09225) | 1853001..1854755 | - | 1755 | WP_002938620.1 | hypothetical protein ; Integrase | Integrase |
| OHM52_RS09230 (OHM52_09230) | 1854919..1855080 | - | 162 | WP_153299043.1 | hypothetical protein | - |
| OHM52_RS09235 (OHM52_09235) | 1855215..1855439 | - | 225 | WP_000284847.1 | helix-turn-helix transcriptional regulator | - |
| OHM52_RS09240 (OHM52_09240) | 1855628..1856515 | - | 888 | WP_000769130.1 | aldose 1-epimerase family protein | - |
| OHM52_RS09245 (OHM52_09245) | 1856538..1856816 | - | 279 | WP_002938623.1 | DUF3884 family protein | - |
| OHM52_RS09250 (OHM52_09250) | 1856841..1858247 | - | 1407 | WP_002938631.1 | 6-phospho-beta-galactosidase | - |
| OHM52_RS09255 (OHM52_09255) | 1858313..1860028 | - | 1716 | WP_002938634.1 | lactose-specific PTS transporter subunit EIIC | - |
| OHM52_RS09260 (OHM52_09260) | 1860028..1860345 | - | 318 | WP_003082802.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| OHM52_RS09265 (OHM52_09265) | 1860373..1861353 | - | 981 | WP_003084249.1 | tagatose-bisphosphate aldolase | - |
| OHM52_RS09270 (OHM52_09270) | 1861356..1862288 | - | 933 | WP_002936379.1 | tagatose-6-phosphate kinase | - |
| OHM52_RS09275 (OHM52_09275) | 1862300..1862815 | - | 516 | WP_002936382.1 | galactose-6-phosphate isomerase subunit LacB | - |
| OHM52_RS09280 (OHM52_09280) | 1862849..1863274 | - | 426 | WP_003084983.1 | galactose-6-phosphate isomerase subunit LacA | - |
| OHM52_RS09285 (OHM52_09285) | 1863511..1864461 | - | 951 | WP_043033073.1 | ROK family glucokinase | - |
| OHM52_RS09290 (OHM52_09290) | 1864642..1865403 | + | 762 | WP_002936387.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| OHM52_RS09295 (OHM52_09295) | 1865412..1866116 | + | 705 | WP_002936389.1 | HAD family hydrolase | - |
| OHM52_RS09300 (OHM52_09300) | 1866160..1868025 | - | 1866 | WP_264516764.1 | SAG1250 family conjugative relaxase | - |
| OHM52_RS09305 (OHM52_09305) | 1868012..1868377 | - | 366 | WP_000263053.1 | plasmid mobilization relaxosome protein MobC | - |
| OHM52_RS09310 (OHM52_09310) | 1868387..1868746 | - | 360 | WP_002936401.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| OHM52_RS09315 (OHM52_09315) | 1869087..1869329 | - | 243 | WP_002936408.1 | hypothetical protein | - |
| OHM52_RS09320 (OHM52_09320) | 1869383..1870450 | - | 1068 | WP_002936409.1 | Abi family protein | - |
| OHM52_RS09325 (OHM52_09325) | 1870628..1870924 | - | 297 | WP_002936411.1 | hypothetical protein | - |
| OHM52_RS09330 (OHM52_09330) | 1870974..1871363 | - | 390 | WP_000048066.1 | DUF5945 family protein | - |
| OHM52_RS09335 (OHM52_09335) | 1871360..1871587 | - | 228 | WP_000110922.1 | DUF5965 family protein | - |
| OHM52_RS09340 (OHM52_09340) | 1871641..1872717 | - | 1077 | WP_002936424.1 | toprim domain-containing protein | - |
| OHM52_RS09345 (OHM52_09345) | 1872756..1873394 | - | 639 | WP_043028693.1 | hypothetical protein | - |
| OHM52_RS09350 (OHM52_09350) | 1873490..1873780 | - | 291 | WP_248041952.1 | DUF5966 family protein | - |
| OHM52_RS09355 (OHM52_09355) | 1873794..1874093 | - | 300 | WP_002935086.1 | DUF5962 family protein | - |
| OHM52_RS09360 (OHM52_09360) | 1874164..1880988 | - | 6825 | WP_264495597.1 | SNF2-related protein | - |
| OHM52_RS09365 (OHM52_09365) | 1881037..1881588 | - | 552 | WP_014636943.1 | hypothetical protein | - |
| OHM52_RS09370 (OHM52_09370) | 1881572..1881763 | - | 192 | WP_001068448.1 | calcium-binding protein | - |
| OHM52_RS09375 (OHM52_09375) | 1881764..1886659 | - | 4896 | WP_264516765.1 | hypothetical protein | VF |
| OHM52_RS09380 (OHM52_09380) | 1886928..1887563 | - | 636 | WP_024394859.1 | hypothetical protein | - |
| OHM52_RS09385 (OHM52_09385) | 1888141..1888890 | - | 750 | WP_024394858.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| OHM52_RS09390 (OHM52_09390) | 1888905..1889774 | - | 870 | WP_226313481.1 | GHKL domain-containing protein | - |
| OHM52_RS09395 (OHM52_09395) | 1890234..1890389 | - | 156 | WP_000794567.1 | hypothetical protein | - |
| OHM52_RS09400 (OHM52_09400) | 1890411..1890914 | - | 504 | WP_263925393.1 | Lactococcin-G-processing and transport ATP-binding protein LagD | VF |
| OHM52_RS09405 (OHM52_09405) | 1890994..1891998 | + | 1005 | WP_002935211.1 | IS5 family transposase ISSth7 | Transposase |
| OHM52_RS09410 (OHM52_09410) | 1892102..1893757 | - | 1656 | WP_249547177.1 | peptide cleavage/export ABC transporter | - |
| OHM52_RS09415 (OHM52_09415) | 1893960..1894151 | - | 192 | WP_002935101.1 | hypothetical protein | - |
| OHM52_RS09420 (OHM52_09420) | 1894240..1894512 | - | 273 | WP_002935103.1 | DUF3884 family protein | - |
| OHM52_RS09425 (OHM52_09425) | 1894541..1894780 | - | 240 | WP_044674089.1 | hypothetical protein | - |
| OHM52_RS09430 (OHM52_09430) | 1894828..1895856 | - | 1029 | WP_228476962.1 | hypothetical protein | VF |
| OHM52_RS09435 (OHM52_09435) | 1896044..1896205 | - | 162 | WP_002935108.1 | agglutinin receptor | - |
| OHM52_RS09440 (OHM52_09440) | 1896488..1897078 | + | 591 | WP_002935109.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| OHM52_RS09445 (OHM52_09445) | 1897075..1897920 | + | 846 | WP_024394846.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| OHM52_RS09450 (OHM52_09450) | 1897982..1900783 | - | 2802 | WP_014636948.1 | phage tail tip lysozyme | - |
| OHM52_RS09455 (OHM52_09455) | 1900785..1903136 | - | 2352 | WP_029750030.1 | ATPase AAA | - |
| OHM52_RS09460 (OHM52_09460) | 1903093..1903446 | - | 354 | WP_002935113.1 | PrgI family protein | - |
| OHM52_RS09465 (OHM52_09465) | 1903508..1904362 | - | 855 | WP_002935114.1 | conjugal transfer protein TrbL | - |
| OHM52_RS09470 (OHM52_09470) | 1904381..1904623 | - | 243 | WP_001072182.1 | hypothetical protein | - |
| OHM52_RS09475 (OHM52_09475) | 1904641..1906458 | - | 1818 | WP_264516766.1 | type IV secretory system conjugative DNA transfer family protein | - |
| OHM52_RS09480 (OHM52_09480) | 1906458..1906946 | - | 489 | WP_014636953.1 | hypothetical protein | - |
| OHM52_RS09485 (OHM52_09485) | 1907024..1907608 | - | 585 | WP_263925387.1 | CPBP family intramembrane metalloprotease | - |
| OHM52_RS09490 (OHM52_09490) | 1907611..1907844 | - | 234 | WP_002935120.1 | hypothetical protein | - |
| OHM52_RS09495 (OHM52_09495) | 1907853..1908236 | - | 384 | WP_002935121.1 | hypothetical protein | - |
| OHM52_RS09500 (OHM52_09500) | 1908247..1908675 | - | 429 | WP_002935122.1 | hypothetical protein | - |
| OHM52_RS09505 (OHM52_09505) | 1908659..1910014 | - | 1356 | WP_170241784.1 | DNA (cytosine-5-)-methyltransferase | - |
| OHM52_RS09510 (OHM52_09510) | 1910163..1910966 | - | 804 | WP_024394785.1 | replication initiator protein A | - |
| OHM52_RS09515 (OHM52_09515) | 1910963..1911103 | - | 141 | WP_002935125.1 | hypothetical protein | - |
| OHM52_RS09520 (OHM52_09520) | 1911314..1912675 | - | 1362 | WP_024394786.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| OHM52_RS09525 (OHM52_09525) | 1912742..1914064 | - | 1323 | WP_013730298.1 | LCP family protein | - |
| OHM52_RS09530 (OHM52_09530) | 1914076..1914903 | - | 828 | WP_024381706.1 | prephenate dehydratase | - |
| OHM52_RS09535 (OHM52_09535) | 1914894..1915385 | - | 492 | WP_024393608.1 | shikimate kinase | - |
| OHM52_RS09540 (OHM52_09540) | 1915394..1916674 | - | 1281 | WP_014636887.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| OHM52_RS09545 (OHM52_09545) | 1916888..1918129 | + | 1242 | WP_014636889.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| OHM52_RS09550 (OHM52_09550) | 1918113..1919021 | - | 909 | WP_225533317.1 | tetratricopeptide repeat protein | - |
| OHM52_RS09555 (OHM52_09555) | 1919040..1920392 | - | 1353 | WP_225533320.1 | ATP-binding protein | - |
| OHM52_RS09560 (OHM52_09560) | 1920489..1921385 | + | 897 | WP_013730292.1 | Tyrosine recombinase XerC | VF |
| OHM52_RS09565 (OHM52_09565) | 1921417..1921602 | - | 186 | WP_013730291.1 | hypothetical protein | - |
| OHM52_RS09570 (OHM52_09570) | 1921681..1921818 | + | 138 | Protein_1861 | IS110 family transposase | - |
| OHM52_RS09575 (OHM52_09575) | 1921891..1922091 | + | 201 | WP_013730290.1 | IS66 family transposase ISBthe6 | Transposase |
| OHM52_RS09580 (OHM52_09580) | 1922045..1922965 | + | 921 | WP_044675715.1 | IS66 family transposase ISEbi1 | Transposase |
| OHM52_RS09585 (OHM52_09585) | 1923212..1924438 | + | 1227 | WP_248042381.1 | ISL3 family transposase IS1193D | Transposase |
| OHM52_RS09590 (OHM52_09590) | 1924550..1926055 | - | 1506 | WP_044675484.1 | UDP-glucose 6-dehydrogenase | VF |
| OHM52_RS09595 (OHM52_09595) | 1926227..1927618 | - | 1392 | WP_161945825.1 | oligosaccharide flippase family protein | - |
| OHM52_RS09600 (OHM52_09600) | 1927639..1928541 | - | 903 | WP_161944493.1 | glycosyltransferase family A protein | - |
| OHM52_RS09605 (OHM52_09605) | 1928538..1929695 | - | 1158 | WP_044685262.1 | hypothetical protein | - |
| OHM52_RS09610 (OHM52_09610) | 1929692..1930282 | - | 591 | WP_044675422.1 | GNAT family N-acetyltransferase | - |
| OHM52_RS09615 (OHM52_09615) | 1930287..1930649 | - | 363 | WP_052501941.1 | beta-1,6-N-acetylglucosaminyltransferase | - |
| OHM52_RS09620 (OHM52_09620) | 1930691..1931179 | - | 489 | WP_052501942.1 | beta-1,6-N-acetylglucosaminyltransferase | - |
| OHM52_RS09625 (OHM52_09625) | 1931256..1932086 | - | 831 | WP_024390819.1 | UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-galactosyltransferase | VF |
| OHM52_RS09630 (OHM52_09630) | 1932079..1933299 | - | 1221 | WP_024390820.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| OHM52_RS09635 (OHM52_09635) | 1933309..1934007 | - | 699 | WP_014636873.1 | UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase | VF |
| OHM52_RS09640 (OHM52_09640) | 1934452..1936278 | - | 1827 | WP_024390822.1 | UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase | VF |
| OHM52_RS09645 (OHM52_09645) | 1936308..1937039 | - | 732 | WP_013730278.1 | Tyrosine-protein phosphatase CpsB | VF |
| OHM52_RS09650 (OHM52_09650) | 1937078..1937764 | - | 687 | WP_013730277.1 | Tyrosine-protein kinase CpsD | VF |
| OHM52_RS09655 (OHM52_09655) | 1937774..1938463 | - | 690 | WP_013730276.1 | putative capsular polysaccharide biosynthesis protein YwqC | VF |
| OHM52_RS09660 (OHM52_09660) | 1938479..1939918 | - | 1440 | WP_013730275.1 | Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU | VF |
| OHM52_RS09665 (OHM52_09665) | 1940048..1940782 | - | 735 | WP_024381470.1 | peroxide stress protein YaaA | - |
| OHM52_RS09670 (OHM52_09670) | 1940905..1942164 | + | 1260 | WP_013730273.1 | PLP-dependent aminotransferase family protein | - |
| OHM52_RS09675 (OHM52_09675) | 1942263..1943114 | - | 852 | WP_014636868.1 | DegV family protein | - |
| OHM52_RS09680 (OHM52_09680) | 1943241..1943645 | + | 405 | WP_011922106.1 | TetR/AcrR family transcriptional regulator | - |
| OHM52_RS09685 (OHM52_09685) | 1943668..1944453 | - | 786 | WP_024394527.1 | pyrroline-5-carboxylate reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|