MGE detailed information
MGE type: Conjugative plasmid MGE length: 38041 bp
Accession: NZ_CP109888 Location: 1..38041 Organism: Xylella fastidiosa subsp. fastidiosa strain CFBP8073 Replicon: plasmid pXF-P1CFBP8073
Accession: NZ_CP109888 Location: 1..38041 Organism: Xylella fastidiosa subsp. fastidiosa strain CFBP8073 Replicon: plasmid pXF-P1CFBP8073
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK117_RS12220 (OK117_12230) | 1..1986 | + | 1986 | WP_272143355.1 | type I DNA topoisomerase | - |
| OK117_RS12225 (OK117_12235) | 2057..2320 | + | 264 | WP_058565133.1 | hypothetical protein | - |
| OK117_RS12230 (OK117_12240) | 2346..2702 | + | 357 | WP_081046891.1 | TrbC/VirB2 family protein | - |
| OK117_RS12235 (OK117_12245) | 2705..3127 | + | 423 | WP_081046892.1 | hypothetical protein | VF |
| OK117_RS12240 (OK117_12250) | 3141..5588 | + | 2448 | WP_272143359.1 | Type IV secretion system protein virB4 | VF |
| OK117_RS12245 (OK117_12255) | 5585..6265 | + | 681 | WP_272143361.1 | Type IV secretion system protein virB5 | VF |
| OK117_RS12250 (OK117_12260) | 6326..6562 | + | 237 | WP_155561289.1 | hypothetical protein | - |
| OK117_RS12255 (OK117_12265) | 6566..7606 | + | 1041 | WP_058565118.1 | hypothetical protein | VF |
| OK117_RS12260 (OK117_12270) | 7744..7935 | + | 192 | WP_081046886.1 | conjugal transfer protein | - |
| OK117_RS12265 (OK117_12275) | 7916..8722 | + | 807 | WP_272143364.1 | Type IV secretion system protein virB8 | VF |
| OK117_RS12270 (OK117_12280) | 8733..9569 | + | 837 | WP_058565106.1 | Type IV secretion system protein virB9 | VF |
| OK117_RS12275 (OK117_12285) | 9569..10867 | + | 1299 | WP_058565107.1 | hypothetical protein | VF |
| OK117_RS12280 (OK117_12290) | 10852..11895 | + | 1044 | WP_272143368.1 | Type IV secretion system protein VirB11 | VF |
| OK117_RS12285 (OK117_12295) | 11861..13870 | + | 2010 | WP_233341848.1 | hypothetical protein | VF |
| OK117_RS12290 (OK117_12300) | 13880..14785 | + | 906 | WP_272143370.1 | hypothetical protein | - |
| OK117_RS12295 (OK117_12305) | 14751..15989 | + | 1239 | WP_272143373.1 | hypothetical protein | - |
| OK117_RS12300 (OK117_12310) | 15986..16186 | + | 201 | WP_058565126.1 | hypothetical protein | - |
| OK117_RS12305 (OK117_12315) | 16210..16491 | - | 282 | WP_272143375.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| OK117_RS12310 (OK117_12320) | 16478..16744 | - | 267 | WP_154415118.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| OK117_RS12315 (OK117_12325) | 16823..16966 | - | 144 | Protein_19 | hypothetical protein | - |
| OK117_RS12320 (OK117_12330) | 16979..17572 | - | 594 | WP_272143379.1 | Tn3 family transposase TnBth3 | Transposase |
| OK117_RS12325 (OK117_12335) | 17783..18025 | + | 243 | WP_058565093.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| OK117_RS12330 (OK117_12340) | 18087..18395 | - | 309 | WP_058565094.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| OK117_RS12335 (OK117_12345) | 18399..18683 | - | 285 | WP_058565097.1 | hypothetical protein | - |
| OK117_RS12340 (OK117_12350) | 18758..19213 | - | 456 | WP_058565095.1 | hypothetical protein | - |
| OK117_RS12345 (OK117_12355) | 19743..20951 | - | 1209 | WP_058565098.1 | IS200-IS605 family transposase IS609 | Transposase |
| OK117_RS12350 (OK117_12360) | 20974..21390 | + | 417 | WP_272143408.1 | IS200-IS605 family transposase IS609 | Transposase |
| OK117_RS12355 (OK117_12365) | 21526..21795 | + | 270 | WP_058565208.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| OK117_RS12360 (OK117_12370) | 21792..22187 | + | 396 | WP_272143386.1 | type II toxin-antitoxin system VapC family toxin | - |
| OK117_RS12365 (OK117_12375) | 22262..22609 | + | 348 | WP_155561305.1 | hypothetical protein | - |
| OK117_RS12370 (OK117_12380) | 22622..23041 | - | 420 | WP_155561304.1 | hypothetical protein | - |
| OK117_RS12375 (OK117_12385) | 23059..23583 | + | 525 | WP_272143389.1 | thermonuclease family protein | - |
| OK117_RS12380 (OK117_12390) | 23918..25291 | - | 1374 | WP_272143391.1 | hypothetical protein | Relaxase |
| OK117_RS12385 (OK117_12395) | 25291..25830 | - | 540 | WP_081046910.1 | hypothetical protein | Relaxase |
| OK117_RS12390 (OK117_12400) | 26100..26489 | + | 390 | WP_058565115.1 | hypothetical protein | - |
| OK117_RS12395 (OK117_12405) | 26486..27193 | + | 708 | WP_058565116.1 | StbB family protein | - |
| OK117_RS12400 (OK117_12410) | 27203..27676 | + | 474 | WP_058565117.1 | hypothetical protein | - |
| OK117_RS12405 (OK117_12415) | 27680..28132 | + | 453 | WP_042464096.1 | virulence factor | - |
| OK117_RS12410 (OK117_12420) | 28288..28656 | - | 369 | WP_272143395.1 | hypothetical protein | - |
| OK117_RS12415 (OK117_12425) | 29146..29982 | - | 837 | WP_058565154.1 | DUF4942 domain-containing protein | - |
| OK117_RS12420 (OK117_12430) | 30700..30957 | - | 258 | WP_272143398.1 | TrfB-related DNA-binding protein | - |
| OK117_RS12425 (OK117_12435) | 30999..31433 | - | 435 | WP_058565155.1 | hypothetical protein | - |
| OK117_RS12430 (OK117_12440) | 31498..32703 | - | 1206 | WP_272143400.1 | ParB/RepB/Spo0J family partition protein | - |
| OK117_RS12435 (OK117_12445) | 32700..33464 | - | 765 | WP_128382939.1 | ParA family protein | - |
| OK117_RS12440 (OK117_12450) | 33679..34089 | - | 411 | WP_058565144.1 | single-stranded DNA-binding protein | - |
| OK117_RS12445 (OK117_12455) | 34163..34963 | - | 801 | WP_058565145.1 | DUF3560 domain-containing protein | - |
| OK117_RS12450 (OK117_12460) | 35968..36744 | - | 777 | WP_058565171.1 | hypothetical protein | - |
| OK117_RS12455 (OK117_12465) | 37068..37331 | + | 264 | WP_199276053.1 | helix-turn-helix transcriptional regulator | - |
| OK117_RS12460 (OK117_12470) | 37465..38040 | + | 576 | WP_058565131.1 | Type IV secretion system protein virB1 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|