MGE detailed information
MGE type: Genomic_island MGE length: 55907 bp
Accession: NZ_CP107717 Location: 1237246..1293152 Organism: Xanthomonas campestris pv. campestris strain XY1-1 Replicon: chromosome
Accession: NZ_CP107717 Location: 1237246..1293152 Organism: Xanthomonas campestris pv. campestris strain XY1-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OF401_RS05160 (OF401_05160) | 1232863..1233648 | - | 786 | WP_011038258.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| OF401_RS05165 (OF401_05165) | 1233793..1234587 | - | 795 | WP_011038257.1 | thiazole synthase | - |
| OF401_RS05170 (OF401_05170) | 1234636..1234836 | - | 201 | WP_012437546.1 | sulfur carrier protein ThiS | - |
| OF401_RS05175 (OF401_05175) | 1235025..1236809 | + | 1785 | WP_057671619.1 | autotransporter domain-containing esterase | - |
| OF401_RS05185 (OF401_05185) | 1237246..1239126 | + | 1881 | WP_019237331.1 | hypothetical protein ; Integrase | Integrase |
| OF401_RS05190 (OF401_05190) | 1239311..1239730 | + | 420 | WP_019237332.1 | hypothetical protein | - |
| OF401_RS05195 (OF401_05195) | 1239763..1240764 | + | 1002 | WP_011038253.1 | hypothetical protein | - |
| OF401_RS05200 (OF401_05200) | 1240835..1241485 | - | 651 | WP_011038252.1 | LysR substrate-binding domain-containing protein | - |
| OF401_RS05205 (OF401_05205) | 1241588..1241881 | + | 294 | WP_011038251.1 | hypothetical protein | VF |
| OF401_RS05210 (OF401_05210) | 1241909..1242793 | - | 885 | Protein_1006 | HTH-type transcriptional regulator CatM | VF |
| OF401_RS05215 (OF401_05215) | 1243546..1247646 | - | 4101 | WP_081020747.1 | HigA family addiction module antitoxin | - |
| OF401_RS05220 (OF401_05220) | 1248127..1251390 | - | 3264 | WP_057671623.1 | ATP-binding protein | - |
| OF401_RS05225 (OF401_05225) | 1251481..1251612 | + | 132 | Protein_1009 | IS5/IS1182 family transposase | - |
| OF401_RS05230 (OF401_05230) | 1252581..1254119 | + | 1539 | WP_011038243.1 | MASE1 domain-containing protein | - |
| OF401_RS05235 (OF401_05235) | 1255141..1255788 | + | 648 | WP_016848927.1 | hypothetical protein | - |
| OF401_RS05240 (OF401_05240) | 1255820..1256959 | + | 1140 | WP_017117946.1 | type IV secretion system protein | - |
| OF401_RS05245 (OF401_05245) | 1257037..1257576 | + | 540 | WP_225443876.1 | DUF4189 domain-containing protein | - |
| OF401_RS05250 (OF401_05250) | 1257974..1258504 | + | 531 | WP_011038239.1 | hypothetical protein | - |
| OF401_RS05255 (OF401_05255) | 1258501..1259160 | + | 660 | WP_057671625.1 | hypothetical protein | - |
| OF401_RS05260 (OF401_05260) | 1259157..1260539 | + | 1383 | WP_057671628.1 | hypothetical protein | - |
| OF401_RS05265 (OF401_05265) | 1260643..1260992 | + | 350 | Protein_1017 | hypothetical protein | VF |
| OF401_RS05270 (OF401_05270) | 1261579..1262723 | + | 1145 | WP_087942063.1 | IS3 family transposase ISXac3 | Transposase |
| OF401_RS05275 (OF401_05275) | 1263272..1263751 | + | 480 | WP_075286085.1 | DNA repair protein RadC | - |
| OF401_RS05280 (OF401_05280) | 1263822..1264013 | + | 192 | WP_221261829.1 | hypothetical protein | - |
| OF401_RS05285 (OF401_05285) | 1264795..1266216 | + | 1422 | WP_057671638.1 | hypothetical protein | - |
| OF401_RS05290 (OF401_05290) | 1266244..1266498 | - | 255 | WP_057671639.1 | hypothetical protein | - |
| OF401_RS05295 (OF401_05295) | 1266765..1268360 | + | 1596 | WP_192012501.1 | MobA/MobL family protein | - |
| OF401_RS05300 (OF401_05300) | 1268433..1268801 | - | 369 | WP_225443877.1 | transcriptional regulator | - |
| OF401_RS05305 (OF401_05305) | 1268809..1269090 | - | 282 | WP_011348355.1 | DUF6516 family protein | - |
| OF401_RS05310 (OF401_05310) | 1269156..1269497 | - | 342 | WP_081020748.1 | hypothetical protein | - |
| OF401_RS05315 (OF401_05315) | 1270223..1270573 | + | 351 | WP_225443878.1 | hypothetical protein | - |
| OF401_RS05320 (OF401_05320) | 1270873..1271103 | - | 231 | WP_157382680.1 | hypothetical protein | - |
| OF401_RS05325 (OF401_05325) | 1271167..1271313 | + | 147 | WP_040940792.1 | hypothetical protein | - |
| OF401_RS05330 (OF401_05330) | 1271498..1271893 | + | 396 | WP_042594933.1 | hypothetical protein | - |
| OF401_RS05335 (OF401_05335) | 1271984..1272376 | + | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| OF401_RS05340 (OF401_05340) | 1272911..1275040 | - | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| OF401_RS05345 (OF401_05345) | 1275534..1276409 | + | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| OF401_RS05350 (OF401_05350) | 1277059..1277736 | + | 678 | WP_003490678.1 | Transcriptional regulatory protein TcrA | VF |
| OF401_RS05355 (OF401_05355) | 1277729..1279063 | + | 1335 | WP_057671653.1 | HAMP domain-containing sensor histidine kinase | - |
| OF401_RS05360 (OF401_05360) | 1279206..1279697 | - | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | Toxin Detail |
| OF401_RS05365 (OF401_05365) | 1279694..1279984 | - | 291 | WP_011038219.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| OF401_RS05370 (OF401_05370) | 1280059..1280460 | - | 402 | WP_040940795.1 | SymE family type I addiction module toxin | - |
| OF401_RS05375 (OF401_05375) | 1280992..1281615 | - | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| OF401_RS05380 (OF401_05380) | 1281629..1282492 | - | 864 | WP_057671659.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| OF401_RS05385 (OF401_05385) | 1282499..1283761 | - | 1263 | WP_057671824.1 | Type II secretion system protein F | VF |
| OF401_RS05390 (OF401_05390) | 1284103..1284531 | + | 429 | WP_057671660.1 | Pilin-like competence factor ComP | VF |
| OF401_RS05395 (OF401_05395) | 1284667..1286397 | + | 1731 | WP_057671826.1 | hypothetical protein | VF |
| OF401_RS05405 (OF401_05405) | 1286816..1288210 | - | 1395 | WP_264252082.1 | Regulatory protein AtoC | VF |
| OF401_RS05410 (OF401_05410) | 1288419..1290029 | - | 1611 | WP_057671664.1 | Adaptive-response sensory-kinase SasA | VF |
| OF401_RS05415 (OF401_05415) | 1290263..1291432 | + | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| OF401_RS05420 (OF401_05420) | 1291457..1292332 | + | 876 | WP_057671668.1 | succinate--CoA ligase subunit alpha | - |
| OF401_RS05425 (OF401_05425) | 1292562..1292846 | + | 285 | WP_040942253.1 | CopG family transcriptional regulator | - |
| OF401_RS05430 (OF401_05430) | 1292850..1293152 | + | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| OF401_RS05435 (OF401_05435) | 1293152..1294807 | + | 1656 | WP_057671669.1 | NAD+ synthase | - |
| OF401_RS05440 (OF401_05440) | 1294801..1295787 | - | 987 | WP_057671671.1 | hypothetical protein | - |
| OF401_RS05445 (OF401_05445) | 1296239..1297120 | - | 882 | WP_011038204.1 | outer membrane protein assembly factor BamD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|