MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97481 bp
Accession: NZ_CP107111 Location: 2057110..2154590 Organism: Clostridioides difficile strain R_cdtRstop4.2 Replicon: chromosome
Accession: NZ_CP107111 Location: 2057110..2154590 Organism: Clostridioides difficile strain R_cdtRstop4.2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM31_RS09630 (OGM31_09630) | 2052600..2054141 | + | 1542 | WP_079754356.1 | SdrD B-like domain-containing protein | - |
| OGM31_RS09635 (OGM31_09635) | 2054160..2054441 | + | 282 | WP_009891898.1 | CD1845 family protein | - |
| OGM31_RS09640 (OGM31_09640) | 2054527..2055549 | + | 1023 | WP_009891897.1 | DUF6017 domain-containing protein | - |
| OGM31_RS09645 (OGM31_09645) | 2055551..2056036 | + | 486 | WP_009891896.1 | PcfB family protein | - |
| OGM31_RS09650 (OGM31_09650) | 2056033..2057019 | + | 987 | Protein_1817 | type IV secretory system conjugative DNA transfer family protein | - |
| OGM31_RS09655 (OGM31_09655) | 2057110..2058990 | + | 1881 | WP_012816185.1 | hypothetical protein ; Integrase | Integrase |
| OGM31_RS09660 (OGM31_09660) | 2059017..2059370 | + | 354 | WP_012816186.1 | TnpV protein | - |
| OGM31_RS09665 (OGM31_09665) | 2059387..2059686 | + | 300 | WP_004612693.1 | hypothetical protein | - |
| OGM31_RS09670 (OGM31_09670) | 2059714..2060082 | - | 369 | WP_012816188.1 | helix-turn-helix transcriptional regulator | - |
| OGM31_RS09675 (OGM31_09675) | 2060227..2060415 | + | 189 | WP_007884040.1 | helix-turn-helix domain-containing protein | - |
| OGM31_RS09680 (OGM31_09680) | 2060408..2061100 | + | 693 | WP_024738629.1 | Transcriptional regulatory protein WalR | VF |
| OGM31_RS09685 (OGM31_09685) | 2061106..2062023 | + | 918 | WP_012816190.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM31_RS09690 (OGM31_09690) | 2062158..2063084 | + | 927 | WP_104732837.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| OGM31_RS09695 (OGM31_09695) | 2063077..2063862 | + | 786 | WP_012816192.1 | ABC transporter permease | - |
| OGM31_RS09700 (OGM31_09700) | 2063865..2064644 | + | 780 | WP_002594767.1 | ABC transporter permease | - |
| OGM31_RS09705 (OGM31_09705) | 2064652..2065113 | + | 462 | WP_012816193.1 | hypothetical protein | - |
| OGM31_RS09710 (OGM31_09710) | 2065558..2065971 | + | 414 | WP_012816194.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM31_RS09715 (OGM31_09715) | 2066073..2066525 | + | 453 | WP_012816195.1 | sigma-24 (feci) | - |
| OGM31_RS09720 (OGM31_09720) | 2066536..2066997 | + | 462 | WP_009296689.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM31_RS09725 (OGM31_09725) | 2067026..2067316 | + | 291 | WP_024739841.1 | DUF3847 domain-containing protein | - |
| OGM31_RS09730 (OGM31_09730) | 2067503..2068948 | + | 1446 | WP_104732839.1 | MobQ family relaxase | - |
| OGM31_RS09735 (OGM31_09735) | 2069056..2069346 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| OGM31_RS09740 (OGM31_09740) | 2069343..2069621 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| OGM31_RS09745 (OGM31_09745) | 2069748..2070146 | + | 399 | WP_012816198.1 | cysteine-rich VLP domain-containing protein | - |
| OGM31_RS09750 (OGM31_09750) | 2070260..2070994 | + | 735 | WP_012816199.1 | phage replisome organizer N-terminal domain-containing protein | - |
| OGM31_RS09755 (OGM31_09755) | 2070991..2071854 | + | 864 | WP_104732840.1 | IS21 family transposase ISBlo1 | Transposase |
| OGM31_RS09760 (OGM31_09760) | 2071898..2072092 | + | 195 | WP_104732841.1 | transposon-encoded TnpW family protein | - |
| OGM31_RS09765 (OGM31_09765) | 2072170..2072535 | + | 366 | WP_104732842.1 | hypothetical protein | - |
| OGM31_RS09770 (OGM31_09770) | 2072630..2073211 | + | 582 | Protein_1841 | TraM recognition domain-containing protein | - |
| OGM31_RS09775 (OGM31_09775) | 2073309..2073686 | + | 378 | WP_009891894.1 | TnpV protein | - |
| OGM31_RS09780 (OGM31_09780) | 2073700..2073981 | + | 282 | WP_009891893.1 | hypothetical protein | - |
| OGM31_RS09785 (OGM31_09785) | 2074103..2074951 | - | 849 | WP_009891891.1 | helix-turn-helix transcriptional regulator | - |
| OGM31_RS09790 (OGM31_09790) | 2075317..2075610 | + | 294 | WP_021407349.1 | hypothetical protein | - |
| OGM31_RS09795 (OGM31_09795) | 2075594..2075899 | + | 306 | WP_074014306.1 | molecular chaperone | - |
| OGM31_RS09800 (OGM31_09800) | 2076327..2077571 | + | 1245 | WP_021422885.1 | hypothetical protein | - |
| OGM31_RS09805 (OGM31_09805) | 2077587..2078273 | + | 687 | WP_074014307.1 | CHC2 zinc finger domain-containing protein | - |
| OGM31_RS09810 (OGM31_09810) | 2078233..2079591 | + | 1359 | WP_009891879.1 | virulence-associated E family protein | - |
| OGM31_RS09815 (OGM31_09815) | 2079859..2080026 | + | 168 | WP_009891878.1 | hypothetical protein | - |
| OGM31_RS09820 (OGM31_09820) | 2080099..2081751 | + | 1653 | WP_012816204.1 | hypothetical protein ; Integrase | Integrase |
| OGM31_RS09825 (OGM31_09825) | 2081799..2082254 | - | 456 | WP_009901261.1 | hypothetical protein | - |
| OGM31_RS09830 (OGM31_09830) | 2082278..2083951 | - | 1674 | WP_009893984.1 | hypothetical protein ; Integrase | Integrase |
| OGM31_RS09835 (OGM31_09835) | 2084029..2084202 | - | 174 | WP_002604472.1 | transposon-encoded TnpW family protein | - |
| OGM31_RS09840 (OGM31_09840) | 2084661..2084903 | - | 243 | WP_002604473.1 | helix-turn-helix domain-containing protein | - |
| OGM31_RS09845 (OGM31_09845) | 2084887..2085324 | - | 438 | WP_002604474.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM31_RS09850 (OGM31_09850) | 2085798..2086781 | - | 984 | WP_002584956.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| OGM31_RS09855 (OGM31_09855) | 2086798..2086983 | - | 186 | WP_003431289.1 | cysteine-rich KTR domain-containing protein | - |
| OGM31_RS09860 (OGM31_09860) | 2087594..2087755 | + | 162 | Protein_1859 | helix-turn-helix domain-containing protein | - |
| OGM31_RS09865 (OGM31_09865) | 2088026..2088736 | - | 711 | WP_009891854.1 | LytTR family DNA-binding domain-containing protein | - |
| OGM31_RS09870 (OGM31_09870) | 2088741..2088914 | - | 174 | WP_002576203.1 | helix-turn-helix domain-containing protein | - |
| OGM31_RS09875 (OGM31_09875) | 2089056..2089289 | + | 234 | Protein_1862 | conjugal transfer protein TraG | - |
| OGM31_RS09880 (OGM31_09880) | 2089453..2089764 | + | 312 | WP_009891846.1 | single-stranded DNA-binding protein | - |
| OGM31_RS09885 (OGM31_09885) | 2089768..2089920 | + | 153 | Protein_1864 | Maff2 family protein | - |
| OGM31_RS09890 (OGM31_09890) | 2090082..2090354 | + | 273 | WP_009274451.1 | helix-turn-helix domain-containing protein | - |
| OGM31_RS09895 (OGM31_09895) | 2090314..2090691 | + | 378 | WP_009274452.1 | TnpV protein | - |
| OGM31_RS09900 (OGM31_09900) | 2090808..2091242 | + | 435 | WP_009274453.1 | MarR family transcriptional regulator | - |
| OGM31_RS09905 (OGM31_09905) | 2091235..2092536 | + | 1302 | WP_012816206.1 | MATE family efflux transporter | - |
| OGM31_RS09910 (OGM31_09910) | 2092630..2093436 | - | 807 | WP_012816207.1 | helix-turn-helix domain-containing protein | - |
| OGM31_RS09915 (OGM31_09915) | 2093920..2094108 | + | 189 | WP_055058411.1 | hypothetical protein | - |
| OGM31_RS09920 (OGM31_09920) | 2094105..2094446 | + | 342 | WP_003020305.1 | DeoR family transcriptional regulator | - |
| OGM31_RS09925 (OGM31_09925) | 2094439..2094735 | + | 297 | WP_012816208.1 | DUF3847 domain-containing protein | - |
| OGM31_RS09930 (OGM31_09930) | 2095035..2095178 | + | 144 | WP_009274458.1 | hypothetical protein | - |
| OGM31_RS09935 (OGM31_09935) | 2095366..2096946 | + | 1581 | WP_042520383.1 | MobQ family relaxase | - |
| OGM31_RS09940 (OGM31_09940) | 2097012..2097656 | + | 645 | WP_042520382.1 | CHC2 zinc finger domain-containing protein | - |
| OGM31_RS09945 (OGM31_09945) | 2097625..2098962 | + | 1338 | WP_042520381.1 | virulence-associated E family protein | - |
| OGM31_RS09950 (OGM31_09950) | 2099204..2099401 | + | 198 | WP_004612761.1 | hypothetical protein | - |
| OGM31_RS09955 (OGM31_09955) | 2099402..2101072 | + | 1671 | WP_012816213.1 | hypothetical protein ; Integrase | Integrase |
| OGM31_RS09960 (OGM31_09960) | 2101163..2101246 | + | 84 | Protein_1879 | Maff2 family protein | - |
| OGM31_RS09965 (OGM31_09965) | 2101266..2102129 | + | 864 | WP_009893980.1 | CD0415/CD1112 family protein | - |
| OGM31_RS09970 (OGM31_09970) | 2102147..2102407 | + | 261 | WP_009888259.1 | hypothetical protein | - |
| OGM31_RS09975 (OGM31_09975) | 2102411..2102800 | + | 390 | WP_009888260.1 | PrgI family protein | - |
| OGM31_RS09980 (OGM31_09980) | 2102712..2105141 | + | 2430 | WP_009888261.1 | ATP-binding protein | - |
| OGM31_RS09985 (OGM31_09985) | 2105145..2107277 | + | 2133 | WP_009888262.1 | CHAP domain-containing protein | - |
| OGM31_RS09990 (OGM31_09990) | 2107289..2107528 | + | 240 | WP_009888263.1 | hypothetical protein | - |
| OGM31_RS09995 (OGM31_09995) | 2107503..2109044 | + | 1542 | WP_009893977.1 | DUF4366 domain-containing protein | - |
| OGM31_RS10000 (OGM31_10000) | 2109139..2110845 | + | 1707 | WP_009893975.1 | DNA topoisomerase 3 | - |
| OGM31_RS10005 (OGM31_10005) | 2110930..2111733 | + | 804 | WP_004804477.1 | KilA-N domain-containing protein | - |
| OGM31_RS10010 (OGM31_10010) | 2111816..2120545 | + | 8730 | WP_009893973.1 | DEAD/DEAH box helicase family protein | - |
| OGM31_RS10015 (OGM31_10015) | 2120588..2121247 | + | 660 | WP_010826392.1 | hypothetical protein | - |
| OGM31_RS10020 (OGM31_10020) | 2121387..2121617 | + | 231 | WP_009889816.1 | helix-turn-helix transcriptional regulator | - |
| OGM31_RS10025 (OGM31_10025) | 2121820..2123442 | + | 1623 | WP_009889819.1 | AAA family ATPase | - |
| OGM31_RS10030 (OGM31_10030) | 2123439..2124506 | + | 1068 | WP_009889821.1 | UvrD-helicase domain-containing protein | - |
| OGM31_RS10035 (OGM31_10035) | 2124534..2124995 | + | 462 | WP_009889823.1 | hypothetical protein | - |
| OGM31_RS10040 (OGM31_10040) | 2124985..2125791 | + | 807 | WP_009889825.1 | PQQ-like beta-propeller repeat protein | - |
| OGM31_RS10045 (OGM31_10045) | 2125827..2127158 | - | 1332 | WP_009889829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| OGM31_RS10050 (OGM31_10050) | 2127164..2127514 | - | 351 | WP_009889831.1 | plasmid mobilization relaxosome protein MobC | - |
| OGM31_RS10055 (OGM31_10055) | 2127848..2129005 | + | 1158 | WP_009893966.1 | TlpA disulfide reductase family protein | - |
| OGM31_RS10060 (OGM31_10060) | 2129027..2129179 | + | 153 | WP_003426158.1 | CD1871A family CXXC motif-containing protein | - |
| OGM31_RS10065 (OGM31_10065) | 2129172..2130062 | + | 891 | WP_009889834.1 | 4Fe-4S binding protein | - |
| OGM31_RS10070 (OGM31_10070) | 2130081..2131358 | + | 1278 | WP_009889836.1 | ABC transporter permease | - |
| OGM31_RS10075 (OGM31_10075) | 2131368..2132024 | + | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| OGM31_RS10080 (OGM31_10080) | 2132024..2133400 | + | 1377 | WP_009893965.1 | ABC transporter permease | - |
| OGM31_RS10085 (OGM31_10085) | 2133498..2134151 | + | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| OGM31_RS10090 (OGM31_10090) | 2134148..2135467 | + | 1320 | WP_009889841.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM31_RS10095 (OGM31_10095) | 2135991..2136401 | + | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM31_RS10100 (OGM31_10100) | 2136890..2137042 | + | 153 | WP_003426199.1 | hypothetical protein | - |
| OGM31_RS10105 (OGM31_10105) | 2137143..2142065 | + | 4923 | WP_263703395.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| OGM31_RS10110 (OGM31_10110) | 2142522..2142869 | + | 348 | WP_003435528.1 | cupin domain-containing protein | - |
| OGM31_RS10115 (OGM31_10115) | 2143019..2144068 | - | 1050 | WP_003423932.1 | ABC transporter substrate-binding protein | - |
| OGM31_RS10120 (OGM31_10120) | 2144454..2145188 | + | 735 | WP_009889846.1 | class I SAM-dependent methyltransferase | - |
| OGM31_RS10125 (OGM31_10125) | 2145330..2145821 | - | 492 | WP_003428667.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| OGM31_RS10130 (OGM31_10130) | 2146170..2146553 | + | 384 | WP_009889847.1 | PBECR2 nuclease fold domain-containing protein | - |
| OGM31_RS10135 (OGM31_10135) | 2147059..2147442 | + | 384 | WP_003428669.1 | YtxH domain-containing protein | - |
| OGM31_RS10140 (OGM31_10140) | 2147444..2147794 | + | 351 | WP_003428670.1 | hypothetical protein | - |
| OGM31_RS10145 (OGM31_10145) | 2147888..2148346 | - | 459 | WP_003435468.1 | hypothetical protein | - |
| OGM31_RS10150 (OGM31_10150) | 2148391..2149179 | - | 789 | WP_003435466.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM31_RS10155 (OGM31_10155) | 2149318..2149755 | - | 438 | WP_009889849.1 | cytidine/deoxycytidylate deaminase family protein | - |
| OGM31_RS10160 (OGM31_10160) | 2149989..2150123 | - | 135 | WP_009889851.1 | hypothetical protein | - |
| OGM31_RS10165 (OGM31_10165) | 2150577..2151086 | + | 510 | WP_009889853.1 | hypothetical protein | VF |
| OGM31_RS10170 (OGM31_10170) | 2151113..2151259 | + | 147 | Protein_1921 | site-specific integrase | - |
| OGM31_RS10175 (OGM31_10175) | 2151997..2152797 | - | 801 | WP_003435446.1 | ABC transporter permease | - |
| OGM31_RS10180 (OGM31_10180) | 2152992..2154590 | - | 1599 | WP_009893325.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| OGM31_RS10185 (OGM31_10185) | 2154918..2155094 | + | 177 | WP_009889863.1 | hypothetical protein | - |
| OGM31_RS10190 (OGM31_10190) | 2155268..2156398 | + | 1131 | WP_009893327.1 | 1-propanol dehydrogenase PduQ | - |
| OGM31_RS10195 (OGM31_10195) | 2156639..2156989 | + | 351 | WP_009893329.1 | BMC domain-containing protein | - |
| OGM31_RS10200 (OGM31_10200) | 2156997..2157446 | + | 450 | WP_009889866.1 | EutP/PduV family microcompartment system protein | - |
| OGM31_RS10205 (OGM31_10205) | 2157548..2158123 | + | 576 | WP_003423977.1 | response regulator | - |
| OGM31_RS10210 (OGM31_10210) | 2158116..2159525 | + | 1410 | WP_009889869.1 | histidine kinase N-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Integrative and Conjugative Element | TA10095 | NC_013316 | 2043677..2141157 | 0 |