MGE detailed information
MGE type: Prophage MGE length: 51903 bp
Accession: NZ_CP106756 Location: 2506264..2558166 Organism: Escherichia coli strain B-JRPT-4119 Replicon: chromosome
Accession: NZ_CP106756 Location: 2506264..2558166 Organism: Escherichia coli strain B-JRPT-4119 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N8153_RS12105 (2501336) | 2501336..2502724 | - | 1389 | WP_001301028.1 | succinate-semialdehyde dehydrogenase | - |
| N8153_RS12110 (2502825) | 2502825..2503706 | + | 882 | WP_000366501.1 | LysR family transcriptional regulator | - |
| N8153_RS12115 (2503784) | 2503784..2504899 | + | 1116 | WP_000258589.1 | putative protein YneK | - |
| N8153_RS12120 (2505049) | 2505049..2506239 | + | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| N8153_RS12125 (2506264) | 2506264..2506929 | - | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| N8153_RS12130 (2507050) | 2507050..2507334 | - | 285 | WP_000268704.1 | helix-turn-helix transcriptional regulator | - |
| N8153_RS12135 (2507324) | 2507324..2507644 | - | 321 | WP_000273128.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N8153_RS12140 (2507864) | 2507864..2508298 | + | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| N8153_RS12145 (2508318) | 2508318..2508701 | + | 384 | WP_000091199.1 | Multiple antibiotic resistance protein MarA | VF |
| N8153_RS12150 (2508733) | 2508733..2508951 | + | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| N8153_RS12155 (2508982) | 2508982..2509881 | - | 900 | WP_000087210.1 | O-acetylserine/cysteine exporter | - |
| N8153_RS12160 (2510076) | 2510076..2511263 | + | 1188 | WP_001054175.1 | efflux MFS transporter YdeE | - |
| N8153_RS12165 (2511390) | 2511390..2511485 | + | 96 | WP_000901367.1 | protein MgtS | - |
| N8153_RS12170 (2511485) | 2511485..2511589 | + | 105 | WP_211180496.1 | protein MgtT | - |
| N8153_RS12175 (2511704) | 2511704..2512594 | - | 891 | WP_000592802.1 | diguanylate cyclase DgcZ | - |
| N8153_RS12180 (2512849) | 2512849..2513241 | - | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| N8153_RS12185 (2513517) | 2513517..2514035 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| N8153_RS12190 (2514079) | 2514079..2516124 | - | 2046 | WP_001300598.1 | peptidyl-dipeptidase Dcp | - |
| N8153_RS12195 (2516261) | 2516261..2517007 | + | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| N8153_RS12200 (2517096) | 2517096..2517782 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N8153_RS12205 (2517959) | 2517959..2518162 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N8153_RS12210 (2518198) | 2518198..2519658 | - | 1461 | WP_000527825.1 | mannitol dehydrogenase family protein | - |
| N8153_RS12215 (2519747) | 2519747..2521114 | - | 1368 | Protein_2371 | MHS family MFS transporter | - |
| N8153_RS12220 (2521635) | 2521635..2521748 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N8153_RS12225 (2521817) | 2521817..2522050 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N8153_RS12230 (2522367) | 2522367..2522957 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N8153_RS12235 (2523055) | 2523055..2523630 | - | 576 | WP_042036693.1 | tail fiber assembly protein | - |
| N8153_RS12240 (2523630) | 2523630..2524604 | - | 975 | WP_227901728.1 | phage tail protein | - |
| N8153_RS12245 (2525109) | 2525109..2525171 | - | 63 | Protein_2377 | tail fiber protein | - |
| N8153_RS12250 (2525154) | 2525154..2525621 | - | 468 | Protein_2378 | short-chain dehydrogenase | - |
| N8153_RS12255 (2525629) | 2525629..2526024 | - | 396 | WP_000683148.1 | phage minor tail U family protein | - |
| N8153_RS12260 (2526021) | 2526021..2526515 | - | 495 | Protein_2380 | phage tail protein | - |
| N8153_RS12265 (2526509) | 2526509..2527444 | - | 936 | Protein_2381 | phage terminase large subunit family protein | - |
| N8153_RS12270 (2527419) | 2527419..2527964 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| N8153_RS12275 (2528353) | 2528353..2528586 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N8153_RS12280 (2528644) | 2528644..2529054 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N8153_RS12285 (2529206) | 2529206..2529379 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N8153_RS12290 (2529551) | 2529551..2529706 | - | 156 | WP_001309517.1 | protein YnfN | - |
| N8153_RS12295 (2529786) | 2529786..2529851 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| N8153_RS12300 (2529854) | 2529854..2530042 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| N8153_RS12305 (2530053) | 2530053..2530265 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N8153_RS12310 (2530628) | 2530628..2531125 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N8153_RS12315 (2531122) | 2531122..2531655 | - | 534 | WP_001092971.1 | lysozyme | - |
| N8153_RS12320 (2531652) | 2531652..2531963 | - | 312 | WP_000189910.1 | YdfR family protein | - |
| N8153_RS12325 (2531968) | 2531968..2532183 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N8153_RS12330 (2532403) | 2532403..2532573 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N8153_RS12335 (2532937) | 2532937..2533152 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N8153_RS12340 (2533453) | 2533453..2533665 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N8153_RS12345 (2533720) | 2533720..2533809 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| N8153_RS12350 (2534087) | 2534087..2534347 | - | 261 | Protein_2398 | antitermination protein | - |
| N8153_RS12355 (2534531) | 2534531..2534686 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N8153_RS12360 (2534758) | 2534758..2535045 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N8153_RS12365 (2535045) | 2535045..2535284 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N8153_RS12370 (2535309) | 2535309..2535614 | + | 306 | WP_001326990.1 | protein YdfV | - |
| N8153_RS12375 (2535817) | 2535817..2536149 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N8153_RS12380 (2536586) | 2536586..2536735 | - | 150 | WP_263082490.1 | ISNCY family transposase ISCARN112 | Transposase |
| N8153_RS12385 (2536808) | 2536808..2537878 | - | 1071 | Protein_2405 | ISNCY family transposase ISCARN112 | Transposase |
| N8153_RS12390 (2538668) | 2538668..2538955 | - | 288 | Protein_2406 | hypothetical protein | - |
| N8153_RS12395 (2539433) | 2539433..2539922 | - | 490 | Protein_2407 | class I SAM-dependent methyltransferase | - |
| N8153_RS12400 (2539919) | 2539919..2540293 | - | 375 | WP_000229985.1 | DUF977 family protein | - |
| N8153_RS12405 (2540382) | 2540382..2541347 | - | 966 | Protein_2409 | hypothetical protein | - |
| N8153_RS12410 (2541328) | 2541328..2541849 | - | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| N8153_RS12415 (2541833) | 2541833..2542063 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N8153_RS12420 (2542147) | 2542147..2542554 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N8153_RS12425 (2542691) | 2542691..2544772 | + | 2082 | Protein_2413 | 3'-5' exoribonuclease | - |
| N8153_RS12430 (2544845) | 2544845..2545096 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N8153_RS12435 (2545131) | 2545131..2546411 | + | 1281 | WP_000876957.1 | Putative defective protein IntQ ; Integrase | Integrase |
| N8153_RS12440 (2546599) | 2546599..2547618 | - | 1020 | WP_000836067.1 | Zn-dependent oxidoreductase | - |
| N8153_RS12445 (2547630) | 2547630..2548844 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N8153_RS12450 (2549050) | 2549050..2549376 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| N8153_RS12455 (2549511) | 2549511..2549852 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| N8153_RS12460 (2549887) | 2549887..2550447 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N8153_RS12465 (2550450) | 2550450..2551160 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N8153_RS12470 (2551268) | 2551268..2551573 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| N8153_RS12475 (2551772) | 2551772..2554198 | + | 2427 | WP_000041694.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N8153_RS12480 (2554259) | 2554259..2556682 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N8153_RS12485 (2556693) | 2556693..2557310 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N8153_RS12490 (2557312) | 2557312..2558166 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N8153_RS12495 (2558209) | 2558209..2558823 | + | 615 | WP_241556437.1 | Tat proofreading chaperone DmsD | - |
| N8153_RS12500 (2558982) | 2558982..2560274 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N8153_RS12505 (2560227) | 2560227..2560922 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N8153_RS12510 (2561047) | 2561047..2562267 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|