MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 103350 bp
Accession: NZ_CP106682 Location: 952883..1056232 Organism: Pseudomonas aeruginosa strain PALA13 Replicon: chromosome
Accession: NZ_CP106682 Location: 952883..1056232 Organism: Pseudomonas aeruginosa strain PALA13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA13_RS04390 (PALA13_00872) | 948038..949000 | + | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| PALA13_RS04395 (PALA13_00873) | 948997..949725 | + | 729 | WP_003102588.1 | peptidoglycan editing factor PgeF | - |
| PALA13_RS04400 (PALA13_00874) | 949881..952445 | + | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| PALA13_RS04420 (PALA13_00878) | 953297..954580 | - | 1284 | WP_003158137.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PALA13_RS04425 (PALA13_00879) | 954577..956496 | - | 1920 | WP_003158138.1 | MobH family relaxase | - |
| PALA13_RS04430 | 956495..956647 | + | 153 | WP_153274499.1 | hypothetical protein | - |
| PALA13_RS04435 | 956708..957064 | - | 357 | WP_015060180.1 | hypothetical protein | - |
| PALA13_RS04440 (PALA13_00880) | 957452..958645 | + | 1194 | WP_003158139.1 | fatty acid desaturase | - |
| PALA13_RS04445 (PALA13_00881) | 958801..960819 | - | 2019 | WP_003125107.1 | class I SAM-dependent methyltransferase | - |
| PALA13_RS04450 (PALA13_00882) | 960928..961422 | - | 495 | WP_003158140.1 | hypothetical protein | - |
| PALA13_RS04455 (PALA13_00883) | 961526..961888 | - | 363 | WP_003125106.1 | hypothetical protein | - |
| PALA13_RS04460 (PALA13_00884) | 961959..962687 | - | 729 | WP_003125105.1 | Crp/Fnr family transcriptional regulator | - |
| PALA13_RS04465 | 962893..963117 | - | 225 | WP_003456722.1 | DUF1652 domain-containing protein | - |
| PALA13_RS04470 (PALA13_00886) | 963131..963394 | - | 264 | WP_003125104.1 | hypothetical protein | - |
| PALA13_RS04475 (PALA13_00887) | 963959..972472 | + | 8514 | WP_003125103.1 | Cyclic beta-(1,2)-glucan synthase NdvB | VF |
| PALA13_RS04480 (PALA13_00888) | 972850..973200 | - | 351 | WP_003125102.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PALA13_RS04485 (PALA13_00889) | 973204..973476 | - | 273 | WP_003086148.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| PALA13_RS04490 (PALA13_00890) | 973595..973948 | + | 354 | WP_003158143.1 | hypothetical protein | - |
| PALA13_RS04495 (PALA13_00891) | 973978..975513 | - | 1536 | WP_003158144.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PALA13_RS04500 (PALA13_00892) | 975510..975857 | - | 348 | WP_003125096.1 | hypothetical protein | - |
| PALA13_RS04505 (PALA13_00893) | 975857..977239 | - | 1383 | WP_003159687.1 | integrating conjugative element protein | - |
| PALA13_RS04510 (PALA13_00894) | 977257..978195 | - | 939 | WP_003159688.1 | TIGR03756 family integrating conjugative element protein | - |
| PALA13_RS04515 | 978195..978626 | - | 432 | WP_003158147.1 | TIGR03757 family integrating conjugative element protein | - |
| PALA13_RS04520 (PALA13_00895) | 978764..979630 | - | 867 | WP_003158148.1 | methyltransferase domain-containing protein | - |
| PALA13_RS04525 (PALA13_00896) | 979620..980042 | - | 423 | WP_003125089.1 | DUF1641 domain-containing protein | - |
| PALA13_RS04530 (PALA13_00897) | 980065..981252 | - | 1188 | WP_003159689.1 | FAD/NAD(P)-binding oxidoreductase | - |
| PALA13_RS04535 (PALA13_00898) | 981811..982029 | + | 219 | WP_003158150.1 | hypothetical protein | - |
| PALA13_RS04540 (PALA13_00899) | 982026..982682 | - | 657 | WP_003158151.1 | DsbA family protein | - |
| PALA13_RS04545 (PALA13_00900) | 982679..982963 | - | 285 | WP_003158152.1 | hypothetical protein | - |
| PALA13_RS04550 (PALA13_00901) | 982960..985764 | - | 2805 | WP_226342062.1 | conjugative transfer ATPase | - |
| PALA13_RS04555 (PALA13_00902) | 985902..986345 | - | 444 | WP_003125338.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| PALA13_RS04560 (PALA13_00903) | 986323..987828 | - | 1506 | WP_003158154.1 | TIGR03752 family integrating conjugative element protein | - |
| PALA13_RS04565 (PALA13_00904) | 987812..988696 | - | 885 | WP_003125336.1 | TIGR03749 family integrating conjugative element protein | - |
| PALA13_RS04570 (PALA13_00905) | 988693..989352 | - | 660 | WP_003158155.1 | TIGR03746 family integrating conjugative element protein | - |
| PALA13_RS04575 (PALA13_00906) | 989349..989735 | - | 387 | WP_003125333.1 | TIGR03750 family conjugal transfer protein | - |
| PALA13_RS04580 (PALA13_00907) | 989746..990102 | - | 357 | WP_003159691.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| PALA13_RS04585 | 990120..990359 | - | 240 | WP_003125330.1 | TIGR03758 family integrating conjugative element protein | - |
| PALA13_RS04590 (PALA13_00909) | 990356..990694 | - | 339 | WP_016561610.1 | RAQPRD family integrative conjugative element protein | - |
| PALA13_RS04595 (PALA13_00910) | 990788..991087 | - | 300 | WP_003125328.1 | hypothetical protein | - |
| PALA13_RS04600 | 991305..991571 | + | 267 | WP_223703940.1 | DUF2845 domain-containing protein | - |
| PALA13_RS04605 (PALA13_00911) | 991616..992725 | - | 1110 | WP_003125327.1 | hypothetical protein | - |
| PALA13_RS04610 (PALA13_00912) | 992857..994338 | - | 1482 | WP_003109390.1 | UvrD-helicase domain-containing protein | - |
| PALA13_RS04615 (PALA13_00913) | 994349..995095 | - | 747 | WP_003159693.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| PALA13_RS04620 (PALA13_00914) | 995095..997326 | - | 2232 | WP_003159694.1 | type IV conjugative transfer system coupling protein TraD | - |
| PALA13_RS04625 (PALA13_00915) | 997330..997599 | - | 270 | WP_003099820.1 | hypothetical protein | - |
| PALA13_RS04630 (PALA13_00916) | 997608..998108 | - | 501 | WP_003099819.1 | integrating conjugative element protein | - |
| PALA13_RS04635 (PALA13_00917) | 998105..998686 | - | 582 | WP_003123352.1 | hypothetical protein | VF |
| PALA13_RS04640 (PALA13_00918) | 998671..999426 | - | 756 | WP_003125319.1 | TIGR03759 family integrating conjugative element protein | - |
| PALA13_RS04645 (PALA13_00919) | 999437..1000129 | - | 693 | WP_003123350.1 | hypothetical protein | - |
| PALA13_RS04650 (PALA13_00920) | 1000347..1000619 | + | 273 | WP_003125312.1 | hypothetical protein | - |
| PALA13_RS04655 (PALA13_00921) | 1000900..1001751 | + | 852 | WP_015060173.1 | tyrosine-type recombinase/integrase | - |
| PALA13_RS04660 (PALA13_00922) | 1001744..1002157 | + | 414 | WP_015060171.1 | hypothetical protein | - |
| PALA13_RS04665 (PALA13_00923) | 1002313..1003098 | + | 786 | WP_003125309.1 | 3-alpha-hydroxycholanate dehydrogenase (NADP(+)) | VF |
| PALA13_RS04670 (PALA13_00924) | 1003161..1003721 | + | 561 | WP_015060170.1 | hypothetical protein | VF |
| PALA13_RS04675 (PALA13_00925) | 1003816..1004157 | + | 342 | WP_003125308.1 | carboxymuconolactone decarboxylase family protein | - |
| PALA13_RS04680 (PALA13_00926) | 1004210..1004881 | + | 672 | WP_016561615.1 | DsbA family oxidoreductase | - |
| PALA13_RS04685 (PALA13_00927) | 1005058..1005360 | + | 303 | WP_017002261.1 | hypothetical protein | - |
| PALA13_RS04690 (PALA13_00928) | 1005462..1007711 | - | 2250 | WP_003159705.1 | DEAD/DEAH box helicase | - |
| PALA13_RS04695 (PALA13_00929) | 1007816..1009261 | - | 1446 | WP_003125297.1 | DUF6094 domain-containing protein | - |
| PALA13_RS04700 (PALA13_00930) | 1009291..1009896 | - | 606 | WP_003125296.1 | hypothetical protein | - |
| PALA13_RS04705 (PALA13_00931) | 1009988..1010242 | - | 255 | WP_003125295.1 | hypothetical protein | - |
| PALA13_RS04710 (PALA13_00932) | 1010310..1010672 | - | 363 | WP_003159706.1 | hypothetical protein | - |
| PALA13_RS04715 (PALA13_00933) | 1010955..1011566 | - | 612 | Protein_929 | DUF3275 family protein | - |
| PALA13_RS04720 (PALA13_00934) | 1011623..1011973 | - | 351 | WP_003109371.1 | hypothetical protein | - |
| PALA13_RS04725 (PALA13_00935) | 1012209..1012916 | - | 708 | WP_003456317.1 | hypothetical protein | - |
| PALA13_RS04730 (PALA13_00936) | 1013402..1013599 | - | 198 | WP_003109369.1 | hypothetical protein | - |
| PALA13_RS04735 (PALA13_00937) | 1013673..1013831 | - | 159 | WP_003109368.1 | hypothetical protein | - |
| PALA13_RS04740 (PALA13_00938) | 1013969..1014448 | - | 480 | WP_003109367.1 | STY4534 family ICE replication protein | - |
| PALA13_RS04745 (PALA13_00939) | 1014772..1014906 | - | 135 | WP_003109366.1 | hypothetical protein | - |
| PALA13_RS04750 | 1014908..1015087 | - | 180 | WP_004347955.1 | hypothetical protein | - |
| PALA13_RS04755 (PALA13_00940) | 1015160..1015549 | - | 390 | WP_003109365.1 | hypothetical protein | - |
| PALA13_RS04760 (PALA13_00941) | 1016471..1016908 | - | 438 | WP_003109363.1 | hypothetical protein | VF |
| PALA13_RS04765 (PALA13_00942) | 1016937..1018265 | - | 1329 | WP_003109362.1 | hypothetical protein | VF |
| PALA13_RS04770 (PALA13_00943) | 1018270..1019211 | - | 942 | WP_003109361.1 | ATPase, T2SS/T4P/T4SS family | - |
| PALA13_RS04775 (PALA13_00944) | 1019208..1019738 | - | 531 | WP_003099765.1 | hypothetical protein | VF |
| PALA13_RS04780 (PALA13_00945) | 1019760..1020839 | - | 1080 | WP_003109360.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| PALA13_RS04785 (PALA13_00946) | 1020839..1022419 | - | 1581 | WP_015060168.1 | hypothetical protein | VF |
| PALA13_RS04790 (PALA13_00947) | 1022428..1022961 | - | 534 | WP_003099760.1 | type IV pilus biogenesis protein PilP | - |
| PALA13_RS04795 (PALA13_00948) | 1022951..1024276 | - | 1326 | WP_003099758.1 | type 4b pilus protein PilO2 | - |
| PALA13_RS04800 (PALA13_00949) | 1024280..1025989 | - | 1710 | WP_003099757.1 | hypothetical protein | VF |
| PALA13_RS04805 (PALA13_00950) | 1025989..1027113 | - | 1125 | WP_003099755.1 | hypothetical protein | VF |
| PALA13_RS04810 (PALA13_00951) | 1027287..1028540 | - | 1254 | WP_004352835.1 | three-Cys-motif partner protein TcmP | - |
| PALA13_RS04815 (PALA13_00952) | 1028573..1029355 | - | 783 | WP_015060166.1 | phage Gp37/Gp68 family protein | - |
| PALA13_RS04820 (PALA13_00953) | 1029477..1031450 | - | 1974 | WP_003105731.1 | DEAD/DEAH box helicase | - |
| PALA13_RS04825 (PALA13_00954) | 1031447..1033336 | - | 1890 | WP_003105732.1 | hypothetical protein | - |
| PALA13_RS04830 | 1033557..1033766 | - | 210 | WP_003105733.1 | cold-shock protein | - |
| PALA13_RS04835 (PALA13_00955) | 1034074..1035993 | - | 1920 | WP_004352838.1 | type I DNA topoisomerase | - |
| PALA13_RS04840 (PALA13_00956) | 1036249..1036479 | + | 231 | WP_003158175.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PALA13_RS04845 (PALA13_00957) | 1036479..1036889 | + | 411 | WP_003105740.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PALA13_RS04850 | 1036911..1037171 | + | 261 | WP_003105742.1 | hypothetical protein | - |
| PALA13_RS04855 (PALA13_00959) | 1037371..1037589 | + | 219 | WP_003105747.1 | hypothetical protein | - |
| PALA13_RS04860 | 1037655..1037852 | - | 198 | WP_003109353.1 | CrpP family ICE-associated protein | - |
| PALA13_RS04865 (PALA13_00960) | 1038008..1038496 | - | 489 | WP_003105748.1 | single-stranded DNA-binding protein | - |
| PALA13_RS04870 (PALA13_00961) | 1038526..1039365 | - | 840 | WP_003105750.1 | Rha family transcriptional regulator | - |
| PALA13_RS04875 (PALA13_00962) | 1039412..1039960 | - | 549 | WP_003105753.1 | DUF3158 family protein | - |
| PALA13_RS04880 (PALA13_00963) | 1039966..1040694 | - | 729 | WP_003105754.1 | TIGR03761 family integrating conjugative element protein | - |
| PALA13_RS04885 (PALA13_00964) | 1040850..1041020 | - | 171 | WP_003159716.1 | hypothetical protein | - |
| PALA13_RS04890 (PALA13_00966) | 1041789..1043114 | - | 1326 | WP_071534719.1 | STY4528 family pathogenicity island replication protein | - |
| PALA13_RS04895 (PALA13_00967) | 1043117..1043872 | - | 756 | WP_003125263.1 | DUF2857 domain-containing protein | - |
| PALA13_RS04900 (PALA13_00968) | 1043900..1045633 | - | 1734 | WP_003158178.1 | ParB family protein | - |
| PALA13_RS04905 (PALA13_00969) | 1045630..1045878 | - | 249 | WP_003111972.1 | Arc family DNA-binding protein | - |
| PALA13_RS04910 (PALA13_00970) | 1045881..1046897 | - | 1017 | WP_003158179.1 | nucleoid-associated protein YejK | - |
| PALA13_RS04915 (PALA13_00971) | 1046897..1047130 | - | 234 | WP_003103841.1 | hypothetical protein | - |
| PALA13_RS04920 | 1047123..1047620 | - | 498 | WP_003125258.1 | hypothetical protein | - |
| PALA13_RS04925 (PALA13_00973) | 1047613..1047870 | - | 258 | WP_003103843.1 | hypothetical protein | - |
| PALA13_RS04930 (PALA13_00974) | 1047867..1048394 | - | 528 | WP_003103844.1 | hypothetical protein | - |
| PALA13_RS04935 (PALA13_00975) | 1048384..1048569 | - | 186 | WP_003103845.1 | hypothetical protein | - |
| PALA13_RS04940 | 1048747..1049193 | + | 447 | WP_016561619.1 | hypothetical protein | - |
| PALA13_RS04945 (PALA13_00977) | 1049632..1050975 | - | 1344 | WP_003103846.1 | replicative DNA helicase | - |
| PALA13_RS04950 (PALA13_00978) | 1050972..1051190 | - | 219 | WP_003103847.1 | hypothetical protein | - |
| PALA13_RS04955 (PALA13_00979) | 1051174..1051881 | - | 708 | WP_003103848.1 | HNH endonuclease signature motif containing protein | - |
| PALA13_RS04960 (PALA13_00980) | 1051878..1052579 | - | 702 | WP_003103849.1 | DUF2786 domain-containing protein | - |
| PALA13_RS04965 (PALA13_00981) | 1052579..1053265 | - | 687 | WP_003159719.1 | Lar family restriction alleviation protein | - |
| PALA13_RS04970 (PALA13_00982) | 1053262..1054008 | - | 747 | WP_003159720.1 | hypothetical protein | - |
| PALA13_RS04975 (PALA13_00983) | 1054014..1054511 | - | 498 | WP_003103852.1 | hypothetical protein | - |
| PALA13_RS04980 (PALA13_00984) | 1054508..1055233 | - | 726 | WP_003103853.1 | hypothetical protein | - |
| PALA13_RS04985 (PALA13_00985) | 1055235..1056095 | - | 861 | WP_003158180.1 | ParA family protein | - |
| PALA13_RS04990 (PALA13_00986) | 1056461..1060660 | - | 4200 | WP_003455748.1 | two-partner secretion system exoprotein TpsA4 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|