MGE detailed information
MGE type: Genomic_island MGE length: 12937 bp
Accession: NZ_CP104788 Location: 1710719..1723655 Organism: Escherichia coli strain SHP24 Replicon: chromosome
Accession: NZ_CP104788 Location: 1710719..1723655 Organism: Escherichia coli strain SHP24 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6H17_RS08490 (1707534) | 1707534..1709219 | - | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| N6H17_RS08495 (1709422) | 1709422..1709544 | + | 123 | WP_120795387.1 | protein YneP | - |
| N6H17_RS08500 (1709510) | 1709510..1710667 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| N6H17_RS08505 (1710719) | 1710719..1712401 | - | 1683 | WP_001295684.1 | sulfatase | - |
| N6H17_RS08510 (1712803) | 1712803..1713564 | - | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| N6H17_RS08515 (1713639) | 1713639..1713836 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| N6H17_RS08520 (1714084) | 1714084..1716363 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| N6H17_RS08525 (1716697) | 1716697..1717611 | - | 915 | WP_000520676.1 | hypothetical protein | VF |
| N6H17_RS08530 (1717670) | 1717670..1718173 | - | 504 | WP_000825452.1 | hypothetical protein | VF |
| N6H17_RS08540 (1719492) | 1719492..1720052 | - | 561 | WP_261629633.1 | hypothetical protein | VF |
| N6H17_RS08545 (1720066) | 1720066..1721292 | - | 1227 | Protein_1668 | hypothetical protein | VF |
| N6H17_RS08550 (1721547) | 1721547..1721755 | - | 209 | Protein_1669 | AraC family transcriptional regulator | - |
| N6H17_RS08555 (1722067) | 1722067..1723389 | - | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| N6H17_RS08560 (1723389) | 1723389..1723655 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.002 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.002 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.002 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.002 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.002 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.002 |