MGE detailed information
MGE type: Prophage MGE length: 51739 bp
Accession: NZ_CP104681 Location: 2328954..2380692 Organism: Escherichia coli strain 2022CK-00450 Replicon: chromosome
Accession: NZ_CP104681 Location: 2328954..2380692 Organism: Escherichia coli strain 2022CK-00450 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5922_RS11310 (2324853) | 2324853..2326073 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| N5922_RS11315 (2326198) | 2326198..2326893 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N5922_RS11320 (2326846) | 2326846..2328138 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N5922_RS11325 (2328297) | 2328297..2328911 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N5922_RS11330 (2328954) | 2328954..2329808 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N5922_RS11335 (2329810) | 2329810..2330427 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N5922_RS11340 (2330438) | 2330438..2332861 | - | 2424 | WP_072217321.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N5922_RS11345 (2332922) | 2332922..2335348 | - | 2427 | WP_222214420.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N5922_RS11350 (2335547) | 2335547..2335852 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| N5922_RS11355 (2335960) | 2335960..2336670 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N5922_RS11360 (2336673) | 2336673..2337233 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N5922_RS11365 (2337268) | 2337268..2337609 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| N5922_RS11370 (2337744) | 2337744..2338070 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| N5922_RS11375 (2338276) | 2338276..2339490 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N5922_RS11380 (2339502) | 2339502..2339996 | + | 495 | Protein_2226 | alcohol dehydrogenase catalytic domain-containing protein | - |
| N5922_RS11390 (2340767) | 2340767..2341297 | + | 531 | Protein_2228 | zinc-binding dehydrogenase | - |
| N5922_RS11395 (2341485) | 2341485..2342765 | - | 1281 | WP_000876986.1 | Putative defective protein IntQ ; Integrase | Integrase |
| N5922_RS11400 (2342800) | 2342800..2343051 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| N5922_RS11405 (2343124) | 2343124..2345595 | - | 2472 | WP_089584687.1 | exonuclease | - |
| N5922_RS11410 (2345688) | 2345688..2345879 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N5922_RS11415 (2345876) | 2345876..2346064 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N5922_RS11420 (2346632) | 2346632..2346850 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N5922_RS11425 (2346880) | 2346880..2347008 | - | 129 | WP_000344930.1 | protein YdfB | - |
| N5922_RS11430 (2347010) | 2347010..2347165 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N5922_RS11435 (2347332) | 2347332..2347739 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N5922_RS11440 (2347823) | 2347823..2348053 | + | 231 | WP_000920569.1 | dicB transcriptional regulator DicC | - |
| N5922_RS11445 (2348037) | 2348037..2348558 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| N5922_RS11450 (2348539) | 2348539..2349504 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| N5922_RS11455 (2349545) | 2349545..2349967 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| N5922_RS11460 (2349964) | 2349964..2350453 | + | 490 | Protein_2242 | class I SAM-dependent methyltransferase | - |
| N5922_RS11465 (2350931) | 2350931..2351352 | + | 422 | Protein_2243 | hypothetical protein | - |
| N5922_RS11470 (2351987) | 2351987..2352358 | + | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| N5922_RS11475 (2353181) | 2353181..2353330 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| N5922_RS11480 (2353767) | 2353767..2354099 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| N5922_RS11485 (2354302) | 2354302..2354607 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N5922_RS11490 (2354632) | 2354632..2354871 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N5922_RS11495 (2354871) | 2354871..2355158 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N5922_RS11500 (2355230) | 2355230..2355385 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N5922_RS11505 (2355602) | 2355602..2355853 | + | 252 | WP_000980994.1 | protein Rem | - |
| N5922_RS11510 (2355920) | 2355920..2356198 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N5922_RS11515 (2356200) | 2356200..2357249 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N5922_RS11520 (2357263) | 2357263..2358015 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N5922_RS11525 (2358293) | 2358293..2358382 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N5922_RS11530 (2358437) | 2358437..2358649 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N5922_RS11535 (2358950) | 2358950..2359165 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N5922_RS11540 (2359529) | 2359529..2359699 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N5922_RS11545 (2359919) | 2359919..2360134 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N5922_RS11550 (2360139) | 2360139..2360450 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| N5922_RS11555 (2360447) | 2360447..2360980 | + | 534 | WP_001092971.1 | lysozyme | - |
| N5922_RS11560 (2360977) | 2360977..2361474 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N5922_RS11565 (2361837) | 2361837..2362049 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N5922_RS11570 (2362060) | 2362060..2362248 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| N5922_RS11575 (2362251) | 2362251..2362316 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| N5922_RS11580 (2362396) | 2362396..2362551 | + | 156 | WP_001309517.1 | protein YnfN | - |
| N5922_RS11585 (2362723) | 2362723..2362896 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N5922_RS11590 (2363048) | 2363048..2363458 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N5922_RS11595 (2363624) | 2363624..2364321 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| N5922_RS11600 (2364337) | 2364337..2364549 | - | 213 | Protein_2270 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| N5922_RS11605 (2364866) | 2364866..2365099 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N5922_RS11610 (2365168) | 2365168..2365281 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N5922_RS11615 (2365886) | 2365886..2367169 | + | 1284 | Protein_2273 | MHS family MFS transporter YdfJ | - |
| N5922_RS11620 (2367258) | 2367258..2368718 | + | 1461 | WP_000527800.1 | mannitol dehydrogenase family protein | - |
| N5922_RS11625 (2368754) | 2368754..2368957 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N5922_RS11630 (2369134) | 2369134..2369820 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N5922_RS11635 (2369909) | 2369909..2370655 | - | 747 | WP_001324973.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| N5922_RS11640 (2370792) | 2370792..2372837 | + | 2046 | WP_000210376.1 | peptidyl-dipeptidase Dcp | - |
| N5922_RS11645 (2372882) | 2372882..2373400 | - | 519 | WP_016242129.1 | 2-oxo-tetronate isomerase | - |
| N5922_RS11650 (2373676) | 2373676..2374068 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| N5922_RS11655 (2374323) | 2374323..2375213 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| N5922_RS11660 (2375328) | 2375328..2375432 | - | 105 | WP_211180496.1 | protein MgtT | - |
| N5922_RS11665 (2375432) | 2375432..2375527 | - | 96 | WP_000901367.1 | protein MgtS | - |
| N5922_RS11670 (2375654) | 2375654..2376841 | - | 1188 | WP_001054189.1 | efflux MFS transporter YdeE | - |
| N5922_RS11675 (2377036) | 2377036..2377935 | + | 900 | WP_000087216.1 | O-acetylserine/cysteine exporter | - |
| N5922_RS11680 (2377980) | 2377980..2378678 | - | 699 | WP_029403739.1 | GntR family transcriptional regulator | - |
| N5922_RS11685 (2378877) | 2378877..2379188 | + | 312 | WP_000722572.1 | PTS sugar transporter subunit IIB | - |
| N5922_RS11690 (2379303) | 2379303..2379992 | + | 690 | Protein_2288 | PTS transporter subunit EIIC | - |
| N5922_RS11700 (2380745) | 2380745..2381401 | + | 657 | Protein_2290 | PTS transporter subunit EIIC | - |
| N5922_RS11705 (2381429) | 2381429..2381740 | + | 312 | WP_001459752.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| N5922_RS11710 (2381796) | 2381796..2383468 | + | 1673 | Protein_2292 | carbohydrate porin | - |
| N5922_RS11715 (2383493) | 2383493..2384932 | + | 1440 | WP_016242123.1 | 6-phospho-beta-glucosidase | - |
| N5922_RS11720 (2384989) | 2384989..2385207 | - | 219 | WP_000803522.1 | multiple antibiotic resistance protein MarB | - |
| N5922_RS11725 (2385239) | 2385239..2385622 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|