MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 59329 bp
Accession: NZ_CP104644 Location: 1..59329 Organism: Salmonella enterica strain 1020677 Replicon: plasmid unnamed1
Accession: NZ_CP104644 Location: 1..59329 Organism: Salmonella enterica strain 1020677 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5930_RS23020 (N5930_23025) | 1989..2411 | + | 423 | WP_000925628.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N5930_RS23025 (N5930_23030) | 2411..3685 | + | 1275 | WP_000457542.1 | Y-family DNA polymerase | - |
| N5930_RS23030 (N5930_23035) | 3767..4741 | - | 975 | WP_000064277.1 | ParB family protein | - |
| N5930_RS23035 (N5930_23040) | 4741..5946 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| N5930_RS23040 (N5930_23045) | 6361..7302 | + | 942 | WP_000728919.1 | Recombination-promoting nuclease RpnA | VF |
| N5930_RS23045 (N5930_23050) | 7299..7904 | - | 606 | WP_000176303.1 | DUF2913 family protein | - |
| N5930_RS23050 (N5930_23055) | 7961..8377 | - | 417 | WP_000988946.1 | hypothetical protein | - |
| N5930_RS23055 (N5930_23060) | 8480..8896 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| N5930_RS23060 (N5930_23065) | 8982..10097 | - | 1116 | WP_001247117.1 | DNA-binding protein | - |
| N5930_RS23065 (N5930_23070) | 10355..10843 | + | 489 | WP_001135409.1 | hypothetical protein | - |
| N5930_RS23070 (N5930_23075) | 11498..12238 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| N5930_RS23075 (N5930_23080) | 12445..13005 | + | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| N5930_RS23080 (N5930_23085) | 12989..14653 | + | 1665 | WP_000098781.1 | IS481 family transposase ISAzs36 | Transposase |
| N5930_RS23085 (N5930_23090) | 14586..15611 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| N5930_RS23090 (N5930_23095) | 15800..16837 | - | 1038 | WP_001121400.1 | IS630 family transposase ISEc33 | Transposase |
| N5930_RS23095 (N5930_23100) | 17445..18338 | + | 894 | WP_000346690.1 | virulence genes transcriptional activator SpvR | - |
| N5930_RS23100 (N5930_23105) | 18512..18676 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| N5930_RS23105 (N5930_23110) | 18850..19617 | + | 768 | WP_001676649.1 | virulence protein SpvA | - |
| N5930_RS23110 (N5930_23115) | 19580..19747 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| N5930_RS23115 (N5930_23120) | 19799..21574 | + | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| N5930_RS23120 (N5930_23125) | 21855..22580 | + | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| N5930_RS23125 (N5930_23130) | 22842..23492 | + | 651 | WP_001676646.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| N5930_RS23130 (N5930_23135) | 23619..24044 | - | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| N5930_RS23135 (N5930_23140) | 24101..24451 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| N5930_RS23140 (N5930_23145) | 24518..25078 | - | 561 | WP_000900095.1 | Invasin | VF |
| N5930_RS23145 (N5930_23150) | 25234..25521 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| N5930_RS23150 (N5930_23155) | 25798..26283 | - | 486 | WP_000905606.1 | membrane protein | - |
| N5930_RS23155 (N5930_23160) | 26277..26765 | - | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| N5930_RS23160 (N5930_23165) | 26790..27503 | - | 714 | WP_000545756.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| N5930_RS23165 (N5930_23170) | 27512..28294 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| N5930_RS23170 (N5930_23175) | 28329..28850 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| N5930_RS23175 (N5930_23180) | 28847..29137 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| N5930_RS23180 (N5930_23185) | 29139..29444 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| N5930_RS23185 (N5930_23190) | 29446..29664 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| N5930_RS23190 (N5930_23195) | 30340..30861 | + | 522 | WP_077681952.1 | hypothetical protein | - |
| N5930_RS23195 (N5930_23200) | 30905..31333 | - | 429 | Protein_36 | hypothetical protein | - |
| N5930_RS23200 (N5930_23205) | 31345..31640 | + | 296 | Protein_37 | cytoplasmic protein | - |
| N5930_RS23205 (N5930_23210) | 32134..33123 | + | 990 | WP_000461382.1 | RepB family plasmid replication initiator protein | - |
| N5930_RS23210 (N5930_23215) | 33454..33573 | - | 120 | Protein_39 | recombinase | - |
| N5930_RS23215 (N5930_23220) | 33626..34012 | - | 387 | WP_000751876.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N5930_RS23220 (N5930_23225) | 34379..34690 | - | 312 | WP_015059605.1 | hypothetical protein | - |
| N5930_RS23225 (N5930_23230) | 34719..35021 | + | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| N5930_RS23230 (N5930_23235) | 35296..35820 | + | 525 | WP_000748204.1 | hypothetical protein | VF |
| N5930_RS23235 (N5930_23240) | 36047..38455 | + | 2409 | WP_000007891.1 | Outer membrane usher protein FimD | VF |
| N5930_RS23240 (N5930_23245) | 38448..39140 | + | 693 | WP_001038509.1 | Chaperone protein FaeE | VF |
| N5930_RS23245 (N5930_23250) | 39137..39715 | + | 579 | WP_000085742.1 | hypothetical protein | - |
| N5930_RS23250 (N5930_23255) | 39811..40752 | + | 942 | WP_000802750.1 | hypothetical protein | - |
| N5930_RS23255 (N5930_23260) | 41012..41224 | + | 213 | WP_000004289.1 | hypothetical protein | VF |
| N5930_RS23260 (N5930_23265) | 41209..41559 | + | 351 | WP_261742903.1 | Transcriptional regulatory protein RcsB | VF |
| N5930_RS23265 (N5930_23270) | 41803..42459 | + | 657 | WP_077907617.1 | DsbA family protein | - |
| N5930_RS23270 (N5930_23275) | 42449..42595 | + | 147 | WP_001141718.1 | hypothetical protein | - |
| N5930_RS23275 (N5930_23280) | 42646..43491 | + | 846 | WP_000490317.1 | YjiK family protein | - |
| N5930_RS23280 (N5930_23285) | 43581..44138 | + | 558 | WP_000725064.1 | Attachment invasion locus protein | VF |
| N5930_RS23285 (N5930_23290) | 44404..45150 | + | 747 | WP_000417897.1 | AraC family transcriptional regulator | - |
| N5930_RS23290 (N5930_23295) | 45247..45441 | - | 195 | Protein_55 | SdiA-regulated domain-containing protein | - |
| N5930_RS23295 (N5930_23300) | 46324..47205 | - | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| N5930_RS23300 (N5930_23305) | 47186..47263 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| N5930_RS23305 (N5930_23310) | 47513..47779 | - | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| N5930_RS23310 (N5930_23315) | 47890..48450 | - | 561 | Protein_59 | phospholipase D family protein | - |
| N5930_RS23315 (N5930_23320) | 48731..49012 | - | 282 | Protein_60 | disulfide bond formation protein DsbA | - |
| N5930_RS23320 (N5930_23325) | 49129..49551 | - | 423 | Protein_61 | fertility inhibition protein FinO | - |
| N5930_RS23325 (N5930_23330) | 49631..50145 | - | 515 | Protein_62 | type IV conjugative transfer system lipoprotein TraV | - |
| N5930_RS23330 (N5930_23335) | 50142..50366 | - | 225 | WP_016716015.1 | DUF2689 domain-containing protein | - |
| N5930_RS23335 (N5930_23340) | 50344..50940 | - | 597 | WP_000527901.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| N5930_RS23340 (N5930_23345) | 50930..52351 | - | 1422 | WP_000146697.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| N5930_RS23345 (N5930_23350) | 52351..53091 | - | 741 | WP_001230718.1 | type-F conjugative transfer system secretin TraK | - |
| N5930_RS23350 (N5930_23355) | 53078..53644 | - | 567 | WP_000399767.1 | type IV conjugative transfer system protein TraE | - |
| N5930_RS23355 (N5930_23360) | 53666..53977 | - | 312 | WP_000012130.1 | type IV conjugative transfer system protein TraL | - |
| N5930_RS23360 (N5930_23365) | 53992..54354 | - | 363 | WP_001274199.1 | type IV conjugative transfer system pilin TraA | - |
| N5930_RS23365 (N5930_23370) | 54396..54623 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| N5930_RS23370 (N5930_23375) | 54717..55402 | - | 686 | Protein_71 | PAS domain-containing protein | - |
| N5930_RS23375 (N5930_23380) | 55596..55976 | - | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| N5930_RS23380 (N5930_23385) | 56392..56862 | + | 471 | WP_015056628.1 | hypothetical protein | VF |
| N5930_RS23385 (N5930_23390) | 57173..57991 | - | 819 | Protein_74 | DUF945 domain-containing protein | - |
| N5930_RS23390 (N5930_23395) | 58094..58252 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| N5930_RS23395 (N5930_23400) | 58338..58466 | - | 129 | WP_000372430.1 | hypothetical protein | - |
| N5930_RS23400 (N5930_23405) | 58501..59157 | - | 657 | Protein_77 | plasmid SOS inhibition protein A | - |
| N5930_RS23405 (N5930_23410) | 59160..59261 | - | 102 | Protein_78 | conjugation system SOS inhibitor PsiB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|