MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 59573 bp
Accession: NZ_CP104642 Location: 1..59573 Organism: Salmonella enterica strain 1019942 Replicon: plasmid unnamed1
Accession: NZ_CP104642 Location: 1..59573 Organism: Salmonella enterica strain 1019942 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5927_RS23015 (N5927_23020) | 281..841 | + | 561 | WP_000900095.1 | Invasin | VF |
| N5927_RS23020 (N5927_23025) | 908..1258 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| N5927_RS23025 (N5927_23030) | 1315..1740 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| N5927_RS23030 (N5927_23035) | 1867..2517 | - | 651 | WP_001676646.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| N5927_RS23035 (N5927_23040) | 2779..3504 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| N5927_RS23040 (N5927_23045) | 3785..5560 | - | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| N5927_RS23045 (N5927_23050) | 5612..5779 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| N5927_RS23050 (N5927_23055) | 5742..6509 | - | 768 | WP_001676649.1 | virulence protein SpvA | - |
| N5927_RS23055 (N5927_23060) | 6683..6847 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| N5927_RS23060 (N5927_23065) | 7021..7914 | - | 894 | WP_000346690.1 | virulence genes transcriptional activator SpvR | - |
| N5927_RS23065 (N5927_23070) | 8522..9559 | + | 1038 | WP_001121400.1 | IS630 family transposase ISEc33 | Transposase |
| N5927_RS23070 (N5927_23075) | 9748..10773 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| N5927_RS23075 (N5927_23080) | 10706..12370 | - | 1665 | WP_000098781.1 | IS481 family transposase ISAzs36 | Transposase |
| N5927_RS23080 (N5927_23085) | 12354..12914 | - | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| N5927_RS23085 (N5927_23090) | 13121..13861 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| N5927_RS23090 (N5927_23095) | 14516..15004 | - | 489 | WP_001135409.1 | hypothetical protein | - |
| N5927_RS23095 (N5927_23100) | 15262..16377 | + | 1116 | WP_001247117.1 | DNA-binding protein | - |
| N5927_RS23100 (N5927_23105) | 16463..16879 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| N5927_RS23105 (N5927_23110) | 16982..17398 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| N5927_RS23110 (N5927_23115) | 17455..18060 | + | 606 | WP_000176303.1 | DUF2913 family protein | - |
| N5927_RS23115 (N5927_23120) | 18057..18998 | - | 942 | WP_000728919.1 | ISNCY family transposase ISSen7 | VF |
| N5927_RS23120 (N5927_23125) | 19413..20618 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| N5927_RS23125 (N5927_23130) | 20618..21592 | + | 975 | WP_000064277.1 | ParB family protein | - |
| N5927_RS23130 (N5927_23135) | 21674..22948 | - | 1275 | WP_000457542.1 | Y-family DNA polymerase | - |
| N5927_RS23135 (N5927_23140) | 22948..23370 | - | 423 | WP_000925628.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N5927_RS23140 (N5927_23145) | 23671..25392 | + | 1722 | Protein_25 | ParB/RepB/Spo0J family partition protein | - |
| N5927_RS23145 (N5927_23150) | 25432..25533 | + | 102 | Protein_26 | conjugation system SOS inhibitor PsiB | - |
| N5927_RS23150 (N5927_23155) | 25536..26192 | + | 657 | Protein_27 | plasmid SOS inhibition protein A | - |
| N5927_RS23155 (N5927_23160) | 26227..26355 | + | 129 | WP_000372430.1 | hypothetical protein | - |
| N5927_RS23160 (N5927_23165) | 26441..26599 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| N5927_RS23165 (N5927_23170) | 26702..27520 | + | 819 | Protein_30 | DUF945 domain-containing protein | - |
| N5927_RS23170 (N5927_23175) | 27831..28301 | - | 471 | WP_015056628.1 | hypothetical protein | VF |
| N5927_RS23175 (N5927_23180) | 28717..29097 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| N5927_RS23180 (N5927_23185) | 29291..29976 | + | 686 | Protein_33 | PAS domain-containing protein | - |
| N5927_RS23185 (N5927_23190) | 30070..30297 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| N5927_RS23190 (N5927_23195) | 30339..30701 | + | 363 | WP_001274199.1 | type IV conjugative transfer system pilin TraA | - |
| N5927_RS23195 (N5927_23200) | 30716..31027 | + | 312 | WP_000012130.1 | type IV conjugative transfer system protein TraL | - |
| N5927_RS23200 (N5927_23205) | 31049..31615 | + | 567 | WP_000399767.1 | type IV conjugative transfer system protein TraE | - |
| N5927_RS23205 (N5927_23210) | 31602..32342 | + | 741 | WP_001230718.1 | type-F conjugative transfer system secretin TraK | - |
| N5927_RS23210 (N5927_23215) | 32342..33763 | + | 1422 | WP_000146697.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| N5927_RS23215 (N5927_23220) | 33753..34349 | + | 597 | Protein_40 | conjugal transfer protein TraP | - |
| N5927_RS23220 (N5927_23225) | 34327..34551 | + | 225 | WP_016716015.1 | DUF2689 domain-containing protein | - |
| N5927_RS23225 (N5927_23230) | 34548..35062 | + | 515 | Protein_42 | type IV conjugative transfer system lipoprotein TraV | - |
| N5927_RS23230 (N5927_23235) | 35142..35564 | + | 423 | Protein_43 | fertility inhibition protein FinO | - |
| N5927_RS23235 (N5927_23240) | 35681..35962 | + | 282 | Protein_44 | disulfide bond formation protein DsbA | - |
| N5927_RS23240 (N5927_23245) | 36243..36803 | + | 561 | Protein_45 | phospholipase D family protein | - |
| N5927_RS23245 (N5927_23250) | 36914..37180 | + | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| N5927_RS23250 (N5927_23255) | 37430..37507 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| N5927_RS23255 (N5927_23260) | 37488..38369 | + | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| N5927_RS23260 (N5927_23265) | 39252..39446 | + | 195 | Protein_49 | SdiA-regulated domain-containing protein | - |
| N5927_RS23265 (N5927_23270) | 39543..40289 | - | 747 | WP_000417897.1 | AraC family transcriptional regulator | - |
| N5927_RS23270 (N5927_23275) | 40555..41112 | - | 558 | WP_000725064.1 | Attachment invasion locus protein | VF |
| N5927_RS23275 (N5927_23280) | 41202..42047 | - | 846 | WP_000490317.1 | YjiK family protein | - |
| N5927_RS23280 (N5927_23285) | 42098..42244 | - | 147 | WP_001141718.1 | hypothetical protein | - |
| N5927_RS23285 (N5927_23290) | 42234..42890 | - | 657 | WP_077907617.1 | DsbA family protein | - |
| N5927_RS23290 (N5927_23295) | 43134..43484 | - | 351 | WP_000135399.1 | Transcriptional regulatory protein RcsB | VF |
| N5927_RS23295 (N5927_23300) | 43469..43681 | - | 213 | WP_000004289.1 | hypothetical protein | VF |
| N5927_RS23300 (N5927_23305) | 43941..44882 | - | 942 | WP_000802750.1 | hypothetical protein | - |
| N5927_RS23305 (N5927_23310) | 44978..45556 | - | 579 | WP_000085742.1 | hypothetical protein | - |
| N5927_RS23310 (N5927_23315) | 45553..46245 | - | 693 | WP_001038509.1 | Chaperone protein FaeE | VF |
| N5927_RS23315 (N5927_23320) | 46238..48646 | - | 2409 | WP_000007891.1 | Outer membrane usher protein FimD | VF |
| N5927_RS23320 (N5927_23325) | 48873..49397 | - | 525 | WP_000748204.1 | hypothetical protein | VF |
| N5927_RS23325 (N5927_23330) | 49672..49974 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| N5927_RS23330 (N5927_23335) | 50003..50314 | + | 312 | WP_015059605.1 | hypothetical protein | - |
| N5927_RS23335 (N5927_23340) | 50681..51067 | + | 387 | WP_000751876.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N5927_RS23340 (N5927_23345) | 51120..51239 | + | 120 | Protein_65 | recombinase | - |
| N5927_RS23345 (N5927_23350) | 51570..52559 | - | 990 | WP_000461382.1 | RepB family plasmid replication initiator protein | - |
| N5927_RS23350 (N5927_23355) | 53053..53348 | - | 296 | Protein_67 | cytoplasmic protein | - |
| N5927_RS23355 (N5927_23360) | 53360..53788 | + | 429 | Protein_68 | hypothetical protein | - |
| N5927_RS23360 (N5927_23365) | 53832..54353 | - | 522 | WP_077681952.1 | hypothetical protein | - |
| N5927_RS23365 (N5927_23370) | 55029..55247 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| N5927_RS23370 (N5927_23375) | 55249..55554 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| N5927_RS23375 (N5927_23380) | 55556..55846 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| N5927_RS23380 (N5927_23385) | 55843..56364 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| N5927_RS23385 (N5927_23390) | 56399..57181 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| N5927_RS23390 (N5927_23395) | 57190..57903 | + | 714 | WP_000545756.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| N5927_RS23395 (N5927_23400) | 57928..58416 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| N5927_RS23400 (N5927_23405) | 58410..58895 | + | 486 | WP_000905606.1 | membrane protein | - |
| N5927_RS23405 (N5927_23410) | 59142..59495 | + | 354 | Protein_78 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|