MGE detailed information
MGE type: Prophage MGE length: 57276 bp
Accession: NZ_CP104639 Location: 4991746..5049021 Organism: Escherichia coli strain PNUSAE014970 Replicon: chromosome
Accession: NZ_CP104639 Location: 4991746..5049021 Organism: Escherichia coli strain PNUSAE014970 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4555_RS24595 (4988260) | 4988260..4989006 | + | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| N4555_RS24600 (4989095) | 4989095..4989781 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N4555_RS24605 (4989958) | 4989958..4990161 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N4555_RS24610 (4990197) | 4990197..4991657 | - | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| N4555_RS24615 (4991746) | 4991746..4993029 | - | 1284 | Protein_4799 | MHS family MFS transporter YdfJ | - |
| N4555_RS24620 (4993161) | 4993161..4993403 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N4555_RS24625 (4993565) | 4993565..4994206 | - | 642 | WP_001143808.1 | hypothetical protein | VF |
| N4555_RS24630 (4994288) | 4994288..4994917 | - | 630 | WP_136804942.1 | hypothetical protein | VF |
| N4555_RS24635 (4994990) | 4994990..4995565 | - | 576 | WP_001131659.1 | hypothetical protein | VF |
| N4555_RS24640 (4995678) | 4995678..4995947 | - | 270 | WP_001023992.1 | phage tail fiber C-terminal domain-containing protein | - |
| N4555_RS24645 (4995949) | 4995949..4997262 | - | 1314 | WP_000268955.1 | ISNCY family transposase KIS | Transposase |
| N4555_RS24650 (4997327) | 4997327..4997926 | - | 600 | WP_001230550.1 | Outer membrane protein X | VF |
| N4555_RS24655 (4997997) | 4997997..5001494 | - | 3498 | WP_261628844.1 | host specificity protein J | - |
| N4555_RS24660 (5001628) | 5001628..5002155 | + | 528 | WP_000649830.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| N4555_RS24665 (5002348) | 5002348..5002929 | - | 582 | WP_001090031.1 | tail assembly protein | - |
| N4555_RS24670 (5002926) | 5002926..5003669 | - | 744 | WP_000194760.1 | C40 family peptidase | - |
| N4555_RS24675 (5003680) | 5003680..5004378 | - | 699 | WP_045896506.1 | phage minor tail protein L | - |
| N4555_RS24680 (5004378) | 5004378..5004719 | - | 342 | WP_000807964.1 | phage tail protein | - |
| N4555_RS24685 (5004712) | 5004712..5007956 | - | 3245 | Protein_4813 | phage tail tape measure protein | - |
| N4555_RS24690 (5008004) | 5008004..5008213 | - | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| N4555_RS24695 (5008309) | 5008309..5008683 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| N4555_RS24700 (5008698) | 5008698..5009414 | - | 717 | WP_001275434.1 | major tail subunit | - |
| N4555_RS24705 (5009480) | 5009480..5009824 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| N4555_RS24710 (5009821) | 5009821..5010267 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| N4555_RS24715 (5010264) | 5010264..5010614 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| N4555_RS24720 (5010624) | 5010624..5010950 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| N4555_RS24725 (5010953) | 5010953..5013532 | - | 2580 | Protein_4821 | phage portal protein | - |
| N4555_RS24730 (5013478) | 5013478..5013699 | - | 222 | WP_001063094.1 | hypothetical protein | - |
| N4555_RS24735 (5013744) | 5013744..5015682 | - | 1939 | Protein_4823 | phage major capsid protein | - |
| N4555_RS24740 (5015746) | 5015746..5017407 | - | 1662 | WP_001301491.1 | terminase large subunit | - |
| N4555_RS24745 (5017404) | 5017404..5017969 | - | 566 | Protein_4825 | terminase small subunit | - |
| N4555_RS24750 (5018260) | 5018260..5018625 | - | 366 | WP_000279786.1 | HNH endonuclease | - |
| N4555_RS24755 (5018667) | 5018667..5018894 | + | 228 | WP_000095736.1 | YlcI/YnfO family protein | - |
| N4555_RS24760 (5019320) | 5019320..5019505 | - | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| N4555_RS24765 (5019728) | 5019728..5019874 | - | 147 | WP_000539795.1 | hypothetical protein | - |
| N4555_RS24770 (5019874) | 5019874..5020445 | - | 572 | Protein_4830 | hypothetical protein | - |
| N4555_RS24775 (5020716) | 5020716..5021247 | - | 532 | Protein_4831 | lysozyme | - |
| N4555_RS24780 (5021298) | 5021298..5021624 | - | 327 | WP_071531760.1 | YdfR family protein | - |
| N4555_RS24785 (5021648) | 5021648..5021863 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N4555_RS24790 (5022302) | 5022302..5024153 | - | 1852 | Protein_4834 | DUF1737 domain-containing protein | - |
| N4555_RS24795 (5024130) | 5024130..5024272 | + | 143 | Protein_4835 | hypothetical protein | - |
| N4555_RS24800 (5024467) | 5024467..5024634 | - | 168 | WP_000216653.1 | DUF3927 family protein | - |
| N4555_RS24805 (5024631) | 5024631..5025059 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| N4555_RS24825 (5025700) | 5025700..5026389 | - | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| N4555_RS24830 (5026386) | 5026386..5026745 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N4555_RS24835 (5026758) | 5026758..5027808 | - | 1051 | Protein_4840 | DUF968 domain-containing protein | - |
| N4555_RS24840 (5027810) | 5027810..5028088 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| N4555_RS24845 (5028256) | 5028256..5028411 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| N4555_RS24850 (5028657) | 5028657..5028761 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| N4555_RS24855 (5028877) | 5028877..5029461 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| N4555_RS24860 (5029518) | 5029518..5029913 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| N4555_RS24865 (5029929) | 5029929..5030698 | - | 770 | Protein_4846 | DUF1627 domain-containing protein | - |
| N4555_RS24870 (5030724) | 5030724..5031464 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| N4555_RS24875 (5031471) | 5031471..5032433 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| N4555_RS24880 (5032456) | 5032456..5032881 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| N4555_RS24885 (5032878) | 5032878..5033180 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| N4555_RS24890 (5033278) | 5033278..5033649 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| N4555_RS24895 (5033670) | 5033670..5033861 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| N4555_RS24900 (5033863) | 5033863..5034141 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N4555_RS24905 (5034494) | 5034494..5034793 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| N4555_RS24910 (5034865) | 5034865..5035083 | + | 219 | WP_001171930.1 | protein YdfC | - |
| N4555_RS24915 (5035652) | 5035652..5035840 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| N4555_RS24920 (5035837) | 5035837..5036028 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| N4555_RS24925 (5036121) | 5036121..5038592 | + | 2472 | WP_000048458.1 | exonuclease | - |
| N4555_RS24930 (5038665) | 5038665..5038916 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N4555_RS24935 (5038951) | 5038951..5039633 | + | 683 | Protein_4860 | DUF3596 domain-containing protein | - |
| N4555_RS24940 (5039613) | 5039613..5039699 | - | 87 | Protein_4861 | hypothetical protein | - |
| N4555_RS24945 (5039905) | 5039905..5040231 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| N4555_RS24950 (5040366) | 5040366..5040707 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| N4555_RS24955 (5040742) | 5040742..5041302 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N4555_RS24960 (5041305) | 5041305..5042015 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| N4555_RS24965 (5042123) | 5042123..5042428 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| N4555_RS24970 (5042627) | 5042627..5045053 | + | 2427 | WP_000041704.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N4555_RS24975 (5045114) | 5045114..5047537 | + | 2424 | WP_001414236.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N4555_RS24980 (5047548) | 5047548..5048165 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N4555_RS24985 (5048167) | 5048167..5049021 | + | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N4555_RS24990 (5049064) | 5049064..5049678 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N4555_RS24995 (5049836) | 5049836..5051128 | + | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N4555_RS25000 (5051081) | 5051081..5051776 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N4555_RS25005 (5051901) | 5051901..5053121 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|