MGE detailed information
MGE type: Prophage MGE length: 110198 bp
Accession: NZ_CP104639 Location: 4694664..4804861 Organism: Escherichia coli strain PNUSAE014970 Replicon: chromosome
Accession: NZ_CP104639 Location: 4694664..4804861 Organism: Escherichia coli strain PNUSAE014970 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4555_RS23030 (4689704) | 4689704..4690735 | - | 1032 | WP_000559900.1 | low conductance mechanosensitive channel YnaI | - |
| N4555_RS23035 (4690979) | 4690979..4691236 | + | 258 | WP_000605090.1 | DUF2534 family protein | - |
| N4555_RS23040 (4691286) | 4691286..4692236 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| N4555_RS23045 (4692388) | 4692388..4693140 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| N4555_RS23050 (4693335) | 4693335..4693850 | - | 516 | WP_000945010.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| N4555_RS23055 (4693861) | 4693861..4694622 | - | 762 | Protein_4491 | AbgT family transporter | - |
| N4555_RS23060 (4694664) | 4694664..4695876 | - | 1213 | Protein_4492 | IS3 family transposase | - |
| N4555_RS23065 (4695932) | 4695932..4696699 | - | 768 | Protein_4493 | AbgT family transporter | - |
| N4555_RS23070 (4696736) | 4696736..4698181 | - | 1446 | WP_001156434.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| N4555_RS23075 (4698181) | 4698181..4699491 | - | 1311 | WP_000444937.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| N4555_RS23080 (4699667) | 4699667..4700575 | + | 909 | WP_000885454.1 | LysR family transcriptional regulator | - |
| N4555_RS23085 (4700905) | 4700905..4701468 | + | 564 | WP_001046821.1 | DNA endonuclease SmrA | - |
| N4555_RS23090 (4701489) | 4701489..4702721 | - | 1233 | WP_000628061.1 | diguanylate cyclase DgcM | - |
| N4555_RS23095 (4702915) | 4702915..4702962 | + | 48 | WP_211180494.1 | protein YnaN | - |
| N4555_RS23100 (4702976) | 4702976..4703959 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| N4555_RS23105 (4704234) | 4704234..4704404 | + | 171 | WP_001625136.1 | protein YnaL | - |
| N4555_RS23110 (4704437) | 4704437..4705810 | + | 1374 | WP_000123746.1 | ATP-dependent RNA helicase DbpA | - |
| N4555_RS23115 (4705939) | 4705939..4706874 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| N4555_RS23120 (4706926) | 4706926..4708161 | - | 1236 | WP_000040839.1 | Putative defective protein IntQ ; Integrase | Integrase |
| N4555_RS23125 (4708163) | 4708163..4708378 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (4708482) | 4708482..4708660 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (4708482) | 4708482..4708660 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (4708482) | 4708482..4708660 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (4708482) | 4708482..4708660 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| N4555_RS23130 (4708478) | 4708478..4708666 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| N4555_RS23135 (4708704) | 4708704..4708853 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| N4555_RS23140 (4708909) | 4708909..4709718 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| N4555_RS23145 (4709711) | 4709711..4712311 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| N4555_RS23150 (4712413) | 4712413..4712688 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| N4555_RS23155 (4712763) | 4712763..4712933 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| N4555_RS23160 (4712933) | 4712933..4713154 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| N4555_RS23165 (4713596) | 4713596..4714084 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| N4555_RS23170 (4714081) | 4714081..4714236 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| N4555_RS23175 (4714247) | 4714247..4714426 | - | 180 | WP_001326317.1 | hypothetical protein | - |
| N4555_RS23180 (4714669) | 4714669..4715088 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| N4555_RS23185 (4715168) | 4715168..4715422 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| N4555_RS23190 (4715419) | 4715419..4715841 | + | 423 | WP_000693803.1 | toxin YdaT family protein | - |
| N4555_RS23195 (4715919) | 4715919..4716707 | + | 789 | WP_001304174.1 | hypothetical protein | - |
| N4555_RS23200 (4716714) | 4716714..4717460 | + | 747 | WP_000788980.1 | ATP-binding protein | - |
| N4555_RS23205 (4717483) | 4717483..4718244 | + | 762 | WP_000450712.1 | DUF1627 domain-containing protein | - |
| N4555_RS23210 (4718260) | 4718260..4718682 | + | 423 | WP_001141110.1 | DUF977 family protein | - |
| N4555_RS23215 (4718788) | 4718788..4719000 | + | 213 | WP_000935420.1 | hypothetical protein | - |
| N4555_RS23220 (4719033) | 4719033..4719250 | + | 218 | Protein_4524 | DUF4014 family protein | - |
| N4555_RS23225 (4719252) | 4719252..4719515 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| N4555_RS23230 (4719526) | 4719526..4719687 | + | 162 | WP_000208018.1 | hypothetical protein | - |
| N4555_RS23235 (4719745) | 4719745..4719849 | + | 105 | Protein_4527 | hypothetical protein | - |
| N4555_RS23240 (4720443) | 4720443..4721594 | + | 1152 | WP_001100703.1 | DNA cytosine methyltransferase | - |
| N4555_RS23245 (4721562) | 4721562..4722551 | - | 990 | WP_000016656.1 | hypothetical protein | - |
| N4555_RS23250 (4722551) | 4722551..4723942 | - | 1392 | WP_000138556.1 | ATP-binding protein | - |
| N4555_RS23255 (4724442) | 4724442..4725041 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| N4555_RS23260 (4725041) | 4725041..4725331 | + | 291 | WP_000247761.1 | DUF1364 domain-containing protein | - |
| N4555_RS23265 (4725328) | 4725328..4725882 | + | 555 | WP_000640158.1 | DUF1133 family protein | - |
| N4555_RS23280 (4726444) | 4726444..4726875 | + | 432 | WP_000466957.1 | tellurite resistance TerB family protein | - |
| N4555_RS23285 (4726872) | 4726872..4727039 | + | 168 | WP_000216636.1 | DUF3927 family protein | - |
| N4555_RS23290 (4727450) | 4727450..4729303 | + | 1854 | WP_000143079.1 | SASA family carbohydrate esterase | - |
| N4555_RS23295 (4729453) | 4729453..4729668 | + | 216 | WP_000284522.1 | class II holin family protein | - |
| N4555_RS23300 (4729673) | 4729673..4730017 | + | 345 | WP_000731221.1 | YdfR family protein | - |
| N4555_RS23305 (4730068) | 4730068..4730601 | + | 534 | WP_000992086.1 | lysozyme | - |
| N4555_RS23310 (4730875) | 4730875..4731570 | + | 696 | WP_000661712.1 | phage antirepressor protein | - |
| N4555_RS23315 (4731665) | 4731665..4731796 | + | 132 | WP_001280923.1 | hypothetical protein | - |
| N4555_RS23320 (4732019) | 4732019..4732204 | + | 186 | WP_012817877.1 | Rz1 family lipoprotein | - |
| N4555_RS23325 (4732605) | 4732605..4732931 | + | 327 | WP_000828070.1 | TonB family protein | - |
| N4555_RS23330 (4733063) | 4733063..4733263 | - | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| N4555_RS23335 (4733305) | 4733305..4733670 | + | 366 | WP_000829192.1 | HNH endonuclease | - |
| N4555_RS23340 (4733959) | 4733959..4734522 | + | 564 | WP_000958380.1 | terminase small subunit | - |
| N4555_RS23345 (4734519) | 4734519..4736180 | + | 1662 | WP_001411753.1 | terminase large subunit | - |
| N4555_RS23350 (4736244) | 4736244..4738181 | + | 1938 | WP_000173011.1 | phage major capsid protein | - |
| N4555_RS23355 (4738226) | 4738226..4738447 | + | 222 | WP_001063025.1 | hypothetical protein | - |
| N4555_RS23360 (4738393) | 4738393..4740973 | + | 2581 | Protein_4550 | phage portal protein | - |
| N4555_RS23365 (4740970) | 4740970..4741296 | + | 327 | WP_000125984.1 | head-tail connector protein | - |
| N4555_RS23370 (4741306) | 4741306..4741656 | + | 351 | WP_001007911.1 | phage head closure protein | - |
| N4555_RS23375 (4741653) | 4741653..4742099 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| N4555_RS23380 (4742096) | 4742096..4742440 | + | 345 | WP_000133393.1 | DUF3168 domain-containing protein | - |
| N4555_RS23385 (4742509) | 4742509..4743225 | + | 717 | WP_001275479.1 | major tail subunit | - |
| N4555_RS23390 (4743231) | 4743231..4743605 | + | 375 | WP_001030060.1 | phage tail assembly chaperone | - |
| N4555_RS23395 (4743701) | 4743701..4743910 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| N4555_RS23400 (4743962) | 4743962..4747042 | + | 3081 | WP_137054080.1 | phage tail tape measure protein | - |
| N4555_RS23405 (4747035) | 4747035..4747376 | + | 342 | WP_000807954.1 | phage tail protein | - |
| N4555_RS23410 (4747376) | 4747376..4748074 | + | 699 | WP_001179481.1 | phage minor tail protein L | - |
| N4555_RS23415 (4748085) | 4748085..4748828 | + | 744 | WP_000194720.1 | C40 family peptidase | - |
| N4555_RS23420 (4748825) | 4748825..4749406 | + | 582 | WP_001089999.1 | tail assembly protein | - |
| N4555_RS23425 (4749748) | 4749748..4753222 | + | 3475 | Protein_4563 | host specificity protein J | - |
| N4555_RS23430 (4753290) | 4753290..4753889 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N4555_RS23435 (4753954) | 4753954..4755177 | + | 1224 | WP_261628842.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N4555_RS23440 (4755179) | 4755179..4755448 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| N4555_RS23445 (4755607) | 4755607..4756137 | + | 531 | WP_044386033.1 | hypothetical protein | VF |
| N4555_RS23450 (4756848) | 4756848..4757498 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| N4555_RS23455 (4757648) | 4757648..4758043 | + | 396 | Protein_4569 | IS256 family transposase ISEic2 | Transposase |
| N4555_RS23460 (4758081) | 4758081..4759620 | - | 1540 | Protein_4570 | IS66 family transposase ISEc8 | Transposase |
| N4555_RS23465 (4759670) | 4759670..4760017 | - | 348 | WP_261577623.1 | IS66 family transposase ISEc8 | Transposase |
| N4555_RS23470 (4760014) | 4760014..4760394 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| N4555_RS23475 (4760489) | 4760489..4761307 | + | 819 | Protein_4573 | IS256 family transposase IS1414 | Transposase |
| N4555_RS23480 (4761357) | 4761357..4761599 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| N4555_RS23485 (4761777) | 4761777..4762328 | - | 552 | Protein_4575 | Putative defective protein IntQ ; Integrase | Integrase |
| N4555_RS23490 (4762316) | 4762316..4763554 | - | 1239 | Protein_4576 | exonuclease | - |
| N4555_RS23495 (4763647) | 4763647..4763835 | - | 189 | WP_000199475.1 | DUF1482 family protein | - |
| N4555_RS23500 (4763832) | 4763832..4764020 | - | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| N4555_RS23505 (4764585) | 4764585..4764794 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| N4555_RS23510 (4764795) | 4764795..4765433 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| N4555_RS23515 (4765445) | 4765445..4765597 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| N4555_RS23520 (4765890) | 4765890..4766228 | - | 339 | WP_001416688.1 | S24 family peptidase | - |
| N4555_RS23525 (4766620) | 4766620..4766862 | + | 243 | WP_000747948.1 | Cro/CI family transcriptional regulator | - |
| N4555_RS23530 (4766846) | 4766846..4767271 | + | 426 | WP_000693878.1 | toxin YdaT family protein | - |
| N4555_RS23535 (4767340) | 4767340..4768383 | + | 1044 | WP_001262402.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| N4555_RS23540 (4768376) | 4768376..4768837 | + | 462 | WP_000139447.1 | replication protein P | - |
| N4555_RS23545 (4768871) | 4768871..4769587 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| N4555_RS23550 (4769620) | 4769620..4769901 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| N4555_RS23555 (4769898) | 4769898..4770125 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| N4555_RS23560 (4770118) | 4770118..4770429 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| N4555_RS23565 (4770557) | 4770557..4770775 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| N4555_RS23570 (4770777) | 4770777..4771334 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| N4555_RS23575 (4771625) | 4771625..4771780 | + | 156 | WP_000813258.1 | Hok/Gef family protein | - |
| N4555_RS23580 (4771900) | 4771900..4772244 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N4555_RS23585 (4772366) | 4772366..4772638 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| N4555_RS23590 (4772640) | 4772640..4773689 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| N4555_RS23595 (4773702) | 4773702..4774007 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N4555_RS23600 (4774070) | 4774070..4774624 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| N4555_RS23605 (4774849) | 4774849..4775046 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| N4555_RS23610 (4775182) | 4775182..4775895 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| N4555_RS23625 (4776346) | 4776346..4776777 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| N4555_RS23630 (4776774) | 4776774..4776941 | + | 168 | WP_000216636.1 | DUF3927 family protein | - |
| N4555_RS23635 (4777136) | 4777136..4777279 | - | 144 | Protein_4603 | hypothetical protein | - |
| N4555_RS23640 (4777256) | 4777256..4779106 | + | 1851 | WP_000023185.1 | SASA family carbohydrate esterase | - |
| N4555_RS23645 (4779546) | 4779546..4779761 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| N4555_RS23650 (4779766) | 4779766..4780111 | + | 346 | Protein_4606 | YdfR family protein | - |
| N4555_RS23655 (4780162) | 4780162..4780693 | + | 532 | Protein_4607 | lysozyme | - |
| N4555_RS23660 (4780964) | 4780964..4781533 | + | 570 | WP_001056806.1 | phage antirepressor N-terminal domain-containing protein | - |
| N4555_RS23665 (4781533) | 4781533..4781679 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| N4555_RS23670 (4781902) | 4781902..4782087 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| N4555_RS23675 (4782613) | 4782613..4782927 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| N4555_RS23680 (4783009) | 4783009..4783233 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| N4555_RS23685 (4783620) | 4783620..4784165 | + | 546 | WP_000867493.1 | terminase small subunit | - |
| N4555_RS23690 (4784140) | 4784140..4786065 | + | 1926 | WP_001027223.1 | phage terminase large subunit family protein | - |
| N4555_RS23695 (4786062) | 4786062..4786268 | + | 207 | WP_000198153.1 | gpW family protein | - |
| N4555_RS23700 (4786265) | 4786265..4787867 | + | 1603 | Protein_4616 | phage portal protein | - |
| N4555_RS23705 (4787848) | 4787848..4789167 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| N4555_RS23710 (4789177) | 4789177..4789509 | + | 333 | WP_001295978.1 | head decoration protein | - |
| N4555_RS23715 (4789565) | 4789565..4790591 | + | 1027 | Protein_4619 | major capsid protein | - |
| N4555_RS23720 (4790633) | 4790633..4791031 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| N4555_RS23725 (4791043) | 4791043..4791396 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| N4555_RS23730 (4791411) | 4791411..4791944 | + | 534 | WP_000975020.1 | phage tail protein | - |
| N4555_RS23735 (4791941) | 4791941..4792336 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| N4555_RS23740 (4792344) | 4792344..4793096 | + | 753 | WP_261577654.1 | Ig domain-containing protein | - |
| N4555_RS23745 (4793110) | 4793110..4793532 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| N4555_RS23750 (4793559) | 4793559..4793972 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| N4555_RS23755 (4793953) | 4793953..4796564 | + | 2612 | Protein_4627 | phage tail tape measure protein | - |
| N4555_RS23760 (4796561) | 4796561..4796890 | + | 330 | WP_000847298.1 | phage tail protein | - |
| N4555_RS23765 (4796890) | 4796890..4797588 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| N4555_RS23770 (4797599) | 4797599..4798342 | + | 744 | WP_000194798.1 | C40 family peptidase | - |
| N4555_RS23775 (4798339) | 4798339..4798917 | + | 579 | WP_001302798.1 | tail assembly protein | - |
| N4555_RS23780 (4799158) | 4799158..4802634 | + | 3477 | Protein_4632 | host specificity protein J | - |
| N4555_RS23785 (4802702) | 4802702..4803301 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N4555_RS23790 (4803365) | 4803365..4804588 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N4555_RS23795 (4804613) | 4804613..4804861 | + | 249 | WP_001411813.1 | phage tail fiber C-terminal domain-containing protein | - |
| N4555_RS23800 (4804975) | 4804975..4805550 | + | 576 | WP_001131658.1 | DUF1076 domain-containing protein | - |
| N4555_RS23805 (4805623) | 4805623..4806252 | + | 630 | WP_086204797.1 | DUF1076 domain-containing protein | - |
| N4555_RS23810 (4806334) | 4806334..4806975 | + | 642 | WP_001143784.1 | DUF1076 domain-containing protein | - |
| N4555_RS23815 (4807556) | 4807556..4807990 | - | 435 | WP_001295593.1 | universal stress protein UspF | - |
| N4555_RS23820 (4808131) | 4808131..4809244 | - | 1114 | Protein_4640 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|