MGE detailed information
MGE type: Prophage MGE length: 45078 bp
Accession: NZ_CP104478 Location: 839710..884787 Organism: Staphylococcus aureus strain DSM 20231 Replicon: chromosome
Accession: NZ_CP104478 Location: 839710..884787 Organism: Staphylococcus aureus strain DSM 20231 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1060_RS04020 (N1060_04020) | 835583..836344 | + | 762 | WP_000168845.1 | Fe-S cluster assembly ATPase SufC | - |
| N1060_RS04025 (N1060_04025) | 836442..837749 | + | 1308 | WP_000205572.1 | Fe-S cluster assembly protein SufD | - |
| N1060_RS04030 (N1060_04030) | 837855..839105 | + | 1251 | WP_001006454.1 | cysteine desulfurase | - |
| N1060_RS04035 (N1060_04035) | 839095..839559 | + | 465 | WP_001010508.1 | SUF system NifU family Fe-S cluster assembly protein | - |
| N1060_RS04040 (N1060_04040) | 839710..841107 | + | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| N1060_RS04045 (N1060_04045) | 841175..842224 | - | 1050 | WP_001145725.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| N1060_RS04050 (N1060_04050) | 842336..842536 | + | 201 | WP_000143212.1 | excisionase | - |
| N1060_RS04055 (N1060_04055) | 842473..843378 | - | 906 | WP_000391592.1 | hypothetical protein | - |
| N1060_RS04060 (N1060_04060) | 843410..844135 | - | 726 | WP_000661437.1 | PH domain-containing protein | - |
| N1060_RS04065 (N1060_04065) | 844163..844837 | - | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| N1060_RS04070 (N1060_04070) | 844854..845186 | - | 333 | WP_001055143.1 | helix-turn-helix transcriptional regulator | - |
| N1060_RS04075 (N1060_04075) | 845449..845643 | + | 195 | WP_000108122.1 | helix-turn-helix transcriptional regulator | - |
| N1060_RS04080 (N1060_04080) | 845643..846410 | + | 768 | WP_001002757.1 | phage antirepressor Ant | - |
| N1060_RS04085 (N1060_04085) | 846411..846635 | + | 225 | WP_000187184.1 | hypothetical protein | - |
| N1060_RS04090 (N1060_04090) | 846675..847124 | + | 450 | WP_001836220.1 | hypothetical protein | - |
| N1060_RS04095 (N1060_04095) | 847138..847359 | + | 222 | WP_000977381.1 | hypothetical protein | - |
| N1060_RS04100 (N1060_04100) | 847352..847513 | + | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| N1060_RS04105 (N1060_04105) | 847607..847909 | + | 303 | WP_000165363.1 | DUF2482 family protein | - |
| N1060_RS04110 (N1060_04110) | 847914..848174 | + | 261 | WP_001836221.1 | DUF1108 family protein | - |
| N1060_RS04115 (N1060_04115) | 848187..848723 | + | 537 | WP_001004336.1 | host-nuclease inhibitor Gam family protein | - |
| N1060_RS04120 (N1060_04120) | 848724..849374 | + | 651 | WP_000840496.1 | ERF family protein | - |
| N1060_RS04125 (N1060_04125) | 849371..849814 | + | 444 | WP_001099009.1 | single-stranded DNA-binding protein | - |
| N1060_RS04130 (N1060_04130) | 849826..850500 | + | 675 | WP_000057263.1 | putative HNHc nuclease | - |
| N1060_RS04135 (N1060_04135) | 850497..850646 | + | 150 | WP_001081076.1 | hypothetical protein | - |
| N1060_RS04140 (N1060_04140) | 850639..850920 | - | 282 | WP_000414755.1 | hypothetical protein | - |
| N1060_RS04145 (N1060_04145) | 850986..851756 | + | 771 | WP_001836222.1 | conserved phage C-terminal domain-containing protein | - |
| N1060_RS04150 (N1060_04150) | 851766..852545 | + | 780 | WP_000803062.1 | ATP-binding protein | - |
| N1060_RS04155 (N1060_04155) | 852539..852697 | + | 159 | WP_000256589.1 | hypothetical protein | - |
| N1060_RS04160 (N1060_04160) | 852710..852931 | + | 222 | WP_001123695.1 | DUF3269 family protein | - |
| N1060_RS04165 (N1060_04165) | 852941..853345 | + | 405 | WP_001836225.1 | DUF1064 domain-containing protein | - |
| N1060_RS04170 (N1060_04170) | 853350..853535 | + | 186 | WP_001187243.1 | DUF3113 family protein | - |
| N1060_RS04175 (N1060_04175) | 853536..853841 | + | 306 | WP_000101252.1 | hypothetical protein | - |
| N1060_RS04180 (N1060_04180) | 853969..854325 | + | 357 | WP_000029376.1 | SA1788 family PVL leukocidin-associated protein | - |
| N1060_RS04185 (N1060_04185) | 854329..854571 | + | 243 | WP_001562543.1 | SAV1978 family virulence-associated passenger protein | - |
| N1060_RS04190 (N1060_04190) | 854580..854951 | + | 372 | WP_001557190.1 | hypothetical protein | - |
| N1060_RS04195 (N1060_04195) | 854944..855195 | + | 252 | WP_001836226.1 | DUF1024 family protein | Toxin Detail |
| N1060_RS04200 (N1060_04200) | 855185..855367 | + | 183 | WP_000028421.1 | hypothetical protein | Antitoxin Detail |
| N1060_RS04205 (N1060_04205) | 855360..855890 | + | 531 | WP_000185651.1 | dUTP pyrophosphatase | - |
| N1060_RS04210 (N1060_04210) | 855927..856133 | + | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| N1060_RS04215 (N1060_04215) | 856130..856324 | + | 195 | WP_000132920.1 | hypothetical protein | - |
| N1060_RS04220 (N1060_04220) | 856321..856524 | + | 204 | WP_001072794.1 | hypothetical protein | - |
| N1060_RS04225 (N1060_04225) | 856517..856690 | + | 174 | WP_001657250.1 | transcriptional activator RinB | - |
| N1060_RS04230 (N1060_04230) | 856691..856837 | + | 147 | WP_000990005.1 | hypothetical protein | - |
| N1060_RS04235 (N1060_04235) | 856861..857283 | + | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| N1060_RS04240 (N1060_04240) | 857471..857965 | + | 495 | WP_001038244.1 | terminase small subunit | - |
| N1060_RS04245 (N1060_04245) | 857968..859263 | + | 1296 | WP_001836232.1 | PBSX family phage terminase large subunit | - |
| N1060_RS04250 (N1060_04250) | 859274..860812 | + | 1539 | WP_000909970.1 | phage portal protein | - |
| N1060_RS04255 (N1060_04255) | 860819..861814 | + | 996 | WP_001133044.1 | minor capsid protein | - |
| N1060_RS04260 (N1060_04260) | 861887..862057 | + | 171 | WP_000072208.1 | hypothetical protein | - |
| N1060_RS04265 (N1060_04265) | 862085..862178 | + | 94 | Protein_828 | hypothetical protein | - |
| N1060_RS04270 (N1060_04270) | 862166..862786 | + | 621 | WP_000392146.1 | DUF4355 domain-containing protein | - |
| N1060_RS04275 (N1060_04275) | 862800..863774 | + | 975 | WP_001836233.1 | phage major capsid protein | - |
| N1060_RS04280 (N1060_04280) | 863796..864083 | + | 288 | WP_001836234.1 | hypothetical protein | - |
| N1060_RS04285 (N1060_04285) | 864092..864424 | + | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| N1060_RS04290 (N1060_04290) | 864421..864723 | + | 303 | WP_025175363.1 | hypothetical protein | - |
| N1060_RS04295 (N1060_04295) | 864723..865070 | + | 348 | WP_001017815.1 | HK97 gp10 family phage protein | - |
| N1060_RS04300 (N1060_04300) | 865082..865465 | + | 384 | Protein_835 | hypothetical protein | - |
| N1060_RS04305 (N1060_04305) | 865484..866065 | + | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| N1060_RS04310 (N1060_04310) | 866127..866492 | + | 366 | WP_001100161.1 | tail assembly chaperone | - |
| N1060_RS04315 (N1060_04315) | 866522..866866 | + | 345 | WP_000105584.1 | hypothetical protein | - |
| N1060_RS04320 (N1060_04320) | 866883..870350 | + | 3468 | WP_000141480.1 | hypothetical protein | - |
| N1060_RS04325 (N1060_04325) | 870363..871310 | + | 948 | WP_000350675.1 | phage tail family protein | - |
| N1060_RS04330 (N1060_04330) | 871319..873217 | + | 1899 | WP_000152718.1 | SGNH/GDSL hydrolase family protein | - |
| N1060_RS04335 (N1060_04335) | 873232..875142 | + | 1911 | WP_001836235.1 | hypothetical protein | - |
| N1060_RS04340 (N1060_04340) | 875142..876965 | + | 1824 | WP_000634521.1 | phage baseplate upper protein | - |
| N1060_RS04345 (N1060_04345) | 876965..877342 | + | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| N1060_RS04350 (N1060_04350) | 877346..877519 | + | 174 | WP_000782200.1 | XkdX family protein | - |
| N1060_RS04355 (N1060_04355) | 877559..877858 | + | 300 | WP_000466777.1 | DUF2951 domain-containing protein | - |
| N1060_RS04360 (N1060_04360) | 877995..879893 | + | 1899 | WP_001836236.1 | hypothetical protein | VF |
| N1060_RS04365 (N1060_04365) | 879906..881144 | + | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| N1060_RS04370 (N1060_04370) | 881150..881545 | + | 396 | WP_000398872.1 | hypothetical protein | - |
| N1060_RS04375 (N1060_04375) | 881601..881876 | + | 276 | WP_000351119.1 | phage holin | - |
| N1060_RS04380 (N1060_04380) | 881863..883275 | + | 1413 | WP_001141517.1 | N-acetylmuramoyl-L-alanine amidase | - |
| N1060_RS04385 (N1060_04385) | 883335..883892 | - | 558 | WP_001035620.1 | DUF4888 domain-containing protein | - |
| N1060_RS04390 (N1060_04390) | 884267..884419 | + | 153 | WP_001788502.1 | hypothetical protein | - |
| N1060_RS04395 (N1060_04395) | 884490..884600 | + | 111 | WP_000139423.1 | hypothetical protein | - |
| N1060_RS04400 (N1060_04400) | 884602..884787 | + | 186 | WP_001286805.1 | hypothetical protein | - |
| N1060_RS04405 (N1060_04405) | 885472..885609 | + | 138 | WP_001790198.1 | chorismate mutase | - |
| N1060_RS04410 (N1060_04410) | 885615..885929 | - | 315 | WP_000274029.1 | hypothetical protein | - |
| N1060_RS04415 (N1060_04415) | 886294..887334 | + | 1041 | WP_000582332.1 | HlyC/CorC family transporter | - |
| N1060_RS04420 (N1060_04420) | 887348..888415 | + | 1068 | WP_000267247.1 | nitronate monooxygenase family protein | - |
| N1060_RS04425 (N1060_04425) | 888482..888580 | + | 99 | WP_001791752.1 | hypothetical protein | - |
| N1060_RS04430 (N1060_04430) | 888628..889476 | + | 849 | WP_000608129.1 | DUF72 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|