MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 137582 bp
Accession: NZ_CP104472 Location: 1847071..1984652 Organism: Escherichia coli strain UC4224 Replicon: chromosome
Accession: NZ_CP104472 Location: 1847071..1984652 Organism: Escherichia coli strain UC4224 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4S17_RS08955 (1842328) | 1842328..1843068 | - | 741 | WP_001367953.1 | outer membrane beta-barrel protein | - |
| N4S17_RS08960 (1843501) | 1843501..1845327 | + | 1827 | WP_001106666.1 | two-component system sensor histidine kinase AtoS | - |
| N4S17_RS08965 (1845324) | 1845324..1846709 | + | 1386 | WP_000125284.1 | acetoacetate metabolism transcriptional regulator AtoC | - |
| N4S17_RS08970 (1846905) | 1846905..1847567 | + | 663 | WP_000850528.1 | acetate CoA-transferase subunit alpha | - |
| N4S17_RS08975 (1847567) | 1847567..1848217 | + | 651 | WP_000339054.1 | acetate CoA-transferase subunit beta | - |
| N4S17_RS08980 (1848214) | 1848214..1849536 | + | 1323 | WP_000580275.1 | TIGR00366 family protein | - |
| N4S17_RS08985 (1849567) | 1849567..1850751 | + | 1185 | WP_000786522.1 | acetyl-CoA acetyltransferase | - |
| N4S17_RS08990 (1851161) | 1851161..1851814 | - | 654 | Protein_1762 | IS66 family transposase ISEc23 | Transposase |
| N4S17_RS08995 (1852085) | 1852085..1852323 | + | 239 | Protein_1763 | IS66 family insertion sequence element accessory protein TnpB | - |
| N4S17_RS09000 (1852512) | 1852512..1852817 | - | 306 | WP_001518278.1 | hypothetical protein | - |
| N4S17_RS09005 (1853137) | 1853137..1853330 | + | 194 | Protein_1765 | hypothetical protein | - |
| N4S17_RS09010 (1853691) | 1853691..1853819 | + | 129 | WP_001304210.1 | IS3 family transposase ISKpn1 | Transposase |
| N4S17_RS09015 (1853874) | 1853874..1854001 | + | 128 | Protein_1767 | IS3 family transposase | - |
| N4S17_RS09020 (1854132) | 1854132..1854468 | - | 337 | Protein_1768 | hypothetical protein | - |
| N4S17_RS09025 (1855154) | 1855154..1855375 | - | 222 | WP_000477612.1 | hypothetical protein | - |
| N4S17_RS09030 (1856558) | 1856558..1856749 | - | 192 | Protein_1770 | IS256 family transposase ISEic2 | Transposase |
| N4S17_RS09035 (1856763) | 1856763..1858607 | - | 1845 | WP_198458805.1 | Vitamin B12 transporter BtuB | VF |
| N4S17_RS09040 (1859508) | 1859508..1859765 | - | 258 | WP_001032733.1 | hypothetical protein | - |
| N4S17_RS09045 (1859834) | 1859834..1861531 | - | 1698 | WP_000401036.1 | sulfatase | - |
| N4S17_RS09050 (1861626) | 1861626..1862762 | - | 1137 | WP_001228923.1 | Outer membrane porin protein OmpD | VF |
| N4S17_RS09055 (1863438) | 1863438..1863646 | + | 209 | Protein_1775 | IS66 family insertion sequence element accessory protein TnpB | - |
| N4S17_RS09060 (1863633) | 1863633..1863822 | + | 190 | Protein_1776 | IS66 family insertion sequence element accessory protein TnpB | - |
| N4S17_RS09065 (1863825) | 1863825..1864013 | - | 189 | WP_028985165.1 | DUF1187 family protein | - |
| N4S17_RS09070 (1864536) | 1864536..1864677 | + | 142 | Protein_1778 | IS481 family transposase | - |
| N4S17_RS09075 (1865382) | 1865382..1865636 | + | 255 | WP_000004411.1 | helix-turn-helix transcriptional regulator | - |
| N4S17_RS09080 (1866536) | 1866536..1870627 | + | 4092 | WP_261306974.1 | Serine protease SepA autotransporter | VF |
| N4S17_RS09085 (1870875) | 1870875..1871000 | - | 126 | WP_001344629.1 | hypothetical protein | - |
| N4S17_RS09090 (1871134) | 1871134..1871499 | + | 366 | WP_050864089.1 | hypothetical protein | - |
| N4S17_RS09095 (1871509) | 1871509..1871700 | + | 192 | WP_000264910.1 | hypothetical protein | - |
| N4S17_RS09100 (1871734) | 1871734..1871943 | + | 210 | WP_000323309.1 | hypothetical protein | - |
| N4S17_RS09105 (1871970) | 1871970..1872329 | - | 360 | Protein_1785 | IS66 family transposase ISCro1 | Transposase |
| N4S17_RS09110 (1872441) | 1872441..1873085 | - | 645 | WP_001378814.1 | hypothetical protein | - |
| N4S17_RS09115 (1873106) | 1873106..1873375 | - | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| N4S17_RS09120 (1873454) | 1873454..1874092 | - | 639 | WP_000502848.1 | ParB N-terminal domain-containing protein | - |
| N4S17_RS09125 (1874077) | 1874077..1875309 | - | 1233 | WP_001285503.1 | phosphoadenosine phosphosulfate reductase | - |
| N4S17_RS09130 (1875809) | 1875809..1878490 | - | 2682 | WP_192815545.1 | AAA domain-containing protein | - |
| N4S17_RS09135 (1878731) | 1878731..1878896 | - | 166 | Protein_1791 | hypothetical protein | - |
| N4S17_RS09140 (1878863) | 1878863..1879447 | - | 585 | WP_231318977.1 | hypothetical protein | VF |
| N4S17_RS09145 (1879606) | 1879606..1879911 | - | 306 | WP_032279885.1 | hypothetical protein | - |
| N4S17_RS09150 (1879977) | 1879977..1881722 | - | 1746 | WP_028985514.1 | NERD domain-containing protein/DEAD/DEAH box helicase | - |
| N4S17_RS09155 (1881900) | 1881900..1882475 | - | 576 | WP_000737515.1 | Attachment invasion locus protein | VF |
| N4S17_RS09160 (1882554) | 1882554..1883018 | - | 465 | Protein_1796 | type VI secretion system baseplate subunit TssE | - |
| N4S17_RS09165 (1883019) | 1883019..1883261 | - | 243 | WP_000993065.1 | hypothetical protein | - |
| N4S17_RS09170 (1883268) | 1883268..1883540 | - | 273 | WP_000906735.1 | hypothetical protein | - |
| N4S17_RS09175 (1883675) | 1883675..1883950 | - | 276 | WP_000549471.1 | hypothetical protein | - |
| N4S17_RS09180 (1883979) | 1883979..1884162 | + | 184 | Protein_1800 | transposase domain-containing protein | - |
| N4S17_RS09185 (1884204) | 1884204..1884731 | - | 528 | WP_062865823.1 | hypothetical protein | - |
| N4S17_RS09190 (1885163) | 1885163..1886696 | - | 1534 | Protein_1802 | IS3 family transposase | - |
| N4S17_RS09195 (1887631) | 1887631..1896565 | - | 8935 | Protein_1803 | hemagglutinin repeat-containing protein | - |
| N4S17_RS09200 (1896581) | 1896581..1897110 | - | 530 | Protein_1804 | hypothetical protein | VF |
| N4S17_RS09205 (1897120) | 1897120..1898199 | - | 1080 | WP_223716279.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| N4S17_RS09210 (1898233) | 1898233..1898772 | - | 540 | Protein_1806 | POTRA domain-containing protein | - |
| N4S17_RS09215 (1899448) | 1899448..1899639 | + | 192 | WP_001287885.1 | DUF4222 domain-containing protein | - |
| N4S17_RS09220 (1899692) | 1899692..1899925 | - | 234 | WP_000124190.1 | hypothetical protein | - |
| N4S17_RS09225 (1900021) | 1900021..1900644 | - | 624 | WP_001366001.1 | hypothetical protein | - |
| N4S17_RS09230 (1900733) | 1900733..1901230 | - | 498 | WP_021552435.1 | hypothetical protein | - |
| N4S17_RS09235 (1901580) | 1901580..1902146 | - | 567 | WP_000287898.1 | inovirus-type Gp2 protein | - |
| N4S17_RS09240 (1902174) | 1902174..1902371 | - | 198 | WP_000553835.1 | inovirus-type Gp2 protein | - |
| N4S17_RS09245 (1902620) | 1902620..1903045 | - | 426 | WP_001013306.1 | putative zinc ribbon protein | - |
| N4S17_RS09250 (1903042) | 1903042..1903425 | - | 384 | Protein_1814 | zinc-ribbon domain-containing protein | - |
| N4S17_RS09255 (1903686) | 1903686..1904255 | - | 570 | WP_000221484.1 | inovirus Gp2 family protein | - |
| N4S17_RS09260 (1904459) | 1904459..1904656 | + | 198 | WP_000236763.1 | hypothetical protein | - |
| N4S17_RS09265 (1905002) | 1905002..1905151 | - | 150 | WP_052904223.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| N4S17_RS09270 (1905903) | 1905903..1906109 | + | 207 | WP_000632607.1 | AlpA family transcriptional regulator | - |
| N4S17_RS09275 (1906196) | 1906196..1906798 | + | 603 | WP_000804456.1 | hypothetical protein | - |
| N4S17_RS09280 (1907120) | 1907120..1908604 | - | 1485 | WP_001297234.1 | YfjI family protein | - |
| N4S17_RS09285 (1909834) | 1909834..1910706 | + | 873 | WP_001069673.1 | GTPase family protein | - |
| N4S17_RS09290 (1911034) | 1911034..1914153 | + | 3120 | WP_028985512.1 | autotransporter adhesin Ag43 | - |
| N4S17_RS09295 (1914274) | 1914274..1916214 | + | 1941 | WP_074435018.1 | hypothetical protein | - |
| N4S17_RS09300 (1916221) | 1916221..1916523 | + | 303 | Protein_1824 | IS3 family transposase ISEc31 | Transposase |
| N4S17_RS09305 (1916536) | 1916536..1917688 | - | 1153 | Protein_1825 | IS30-like element IS30 family transposase | - |
| N4S17_RS09310 (1917753) | 1917753..1918658 | + | 906 | Protein_1826 | IS3 family transposase ISCfr6 | Transposase |
| N4S17_RS09315 (1918669) | 1918669..1919103 | + | 435 | Protein_1827 | hypothetical protein | - |
| N4S17_RS09320 (1919179) | 1919179..1919634 | + | 456 | WP_000581504.1 | IrmA family protein | - |
| N4S17_RS09325 (1919713) | 1919713..1919946 | + | 234 | WP_001119729.1 | DUF905 family protein | - |
| N4S17_RS09330 (1920033) | 1920033..1920851 | + | 819 | WP_062865682.1 | DUF932 domain-containing protein | - |
| N4S17_RS09335 (1920906) | 1920906..1921391 | + | 486 | WP_000849591.1 | antirestriction protein | - |
| N4S17_RS09340 (1921407) | 1921407..1921883 | + | 477 | WP_001186726.1 | RadC family protein | - |
| N4S17_RS09345 (1921946) | 1921946..1922167 | + | 222 | WP_000692311.1 | DUF987 domain-containing protein | - |
| N4S17_RS09350 (1922330) | 1922330..1922704 | + | 375 | WP_001280952.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| N4S17_RS09355 (1922751) | 1922751..1923128 | + | 378 | WP_000854904.1 | TA system toxin CbtA family protein | Toxin Detail |
| N4S17_RS09360 (1923125) | 1923125..1923613 | + | 489 | WP_000779174.1 | DUF5983 family protein | - |
| N4S17_RS09365 (1923625) | 1923625..1923822 | + | 198 | WP_000839249.1 | DUF957 domain-containing protein | - |
| N4S17_RS09370 (1923907) | 1923907..1924749 | + | 843 | Protein_1838 | DUF4942 domain-containing protein | - |
| N4S17_RS09375 (1925092) | 1925092..1925628 | - | 537 | WP_000942795.1 | Type II secretion system protein M | VF |
| N4S17_RS09380 (1925630) | 1925630..1926808 | - | 1179 | WP_000094971.1 | hypothetical protein | VF |
| N4S17_RS09385 (1926805) | 1926805..1927785 | - | 981 | WP_261306975.1 | Putative type II secretion system protein K | VF |
| N4S17_RS09390 (1927788) | 1927788..1928387 | - | 600 | WP_001255040.1 | Type II secretion system protein J | VF |
| N4S17_RS09395 (1928384) | 1928384..1928755 | - | 372 | WP_000820117.1 | hypothetical protein | VF |
| N4S17_RS09400 (1928752) | 1928752..1929315 | - | 564 | WP_001115140.1 | Type II secretion system protein H | VF |
| N4S17_RS09405 (1929319) | 1929319..1929774 | - | 456 | WP_000287130.1 | Type II secretion system protein G | VF |
| N4S17_RS09410 (1929791) | 1929791..1931014 | - | 1224 | WP_001173448.1 | Type II secretion system protein F | VF |
| N4S17_RS09415 (1931014) | 1931014..1932507 | - | 1494 | WP_000249348.1 | Type II secretion system protein E | VF |
| N4S17_RS09420 (1932507) | 1932507..1934567 | - | 2061 | WP_000498824.1 | Secretin GspD 2 | VF |
| N4S17_RS09425 (1934597) | 1934597..1935556 | - | 960 | WP_198458816.1 | Type II secretion system protein C 2 | VF |
| N4S17_RS09430 (1935574) | 1935574..1935984 | - | 411 | WP_001298744.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| N4S17_RS09435 (1936050) | 1936050..1936859 | - | 810 | WP_000895880.1 | Prepilin peptidase PppA | VF |
| N4S17_RS09440 (1936989) | 1936989..1941554 | - | 4566 | WP_028985246.1 | hypothetical protein | VF |
| N4S17_RS09445 (1942040) | 1942040..1943722 | - | 1683 | WP_028985245.1 | glycolate permease GlcA | - |
| N4S17_RS09450 (1944078) | 1944078..1946249 | - | 2172 | WP_028985244.1 | malate synthase G | - |
| N4S17_RS09455 (1946271) | 1946271..1946675 | - | 405 | WP_000853256.1 | GlcG family protein | - |
| N4S17_RS09460 (1946680) | 1946680..1947903 | - | 1224 | WP_001194655.1 | glycolate oxidase subunit GlcF | - |
| N4S17_RS09465 (1947914) | 1947914..1948966 | - | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| N4S17_RS09470 (1948966) | 1948966..1950465 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| N4S17_RS09475 (1950716) | 1950716..1951480 | + | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| N4S17_RS09480 (1951487) | 1951487..1952629 | - | 1143 | WP_000388786.1 | protein YghO | - |
| N4S17_RS09485 (1953000) | 1953000..1954721 | + | 1722 | WP_215257534.1 | 4-hydroxyphenylalkanoate adenylyltransferase | VF |
| N4S17_RS09490 (1954718) | 1954718..1955632 | + | 915 | WP_001077143.1 | NAD-dependent epimerase/dehydratase family protein | - |
| N4S17_RS09495 (1955664) | 1955664..1955912 | + | 249 | WP_000248097.1 | acyl carrier protein | - |
| N4S17_RS09500 (1955912) | 1955912..1957084 | + | 1173 | WP_000524966.1 | 8-amino-7-oxononanoate synthase | VF |
| N4S17_RS09505 (1957119) | 1957119..1958198 | - | 1080 | WP_062865680.1 | LPS export ABC transporter permease LptG | - |
| N4S17_RS09510 (1958195) | 1958195..1959265 | - | 1071 | WP_021578793.1 | LPS export ABC transporter permease LptF | - |
| N4S17_RS09515 (1959296) | 1959296..1959856 | - | 561 | WP_001298770.1 | YtfJ family protein | - |
| N4S17_RS09520 (1959868) | 1959868..1960692 | - | 825 | WP_028985243.1 | hypothetical protein | - |
| N4S17_RS09525 (1960692) | 1960692..1962041 | - | 1350 | WP_000896880.1 | lipopolysaccharide biosynthesis protein | - |
| N4S17_RS09530 (1962087) | 1962087..1962845 | - | 759 | WP_000339512.1 | hypothetical protein | - |
| N4S17_RS09535 (1962877) | 1962877..1963590 | - | 714 | WP_001076261.1 | dTMP kinase | - |
| N4S17_RS09540 (1963764) | 1963764..1964456 | + | 693 | WP_001190773.1 | dTMP kinase | - |
| N4S17_RS09545 (1964505) | 1964505..1966004 | - | 1500 | WP_000933299.1 | inorganic phosphate transporter PitB | - |
| N4S17_RS09550 (1966296) | 1966296..1968155 | - | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| N4S17_RS09555 (1968360) | 1968360..1969226 | + | 867 | WP_001298746.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| N4S17_RS09560 (1969526) | 1969526..1970510 | + | 985 | Protein_1876 | IS110 family transposase IS621 | Transposase |
| N4S17_RS09565 (1970632) | 1970632..1970880 | - | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| N4S17_RS09570 (1970893) | 1970893..1971234 | - | 342 | WP_000544952.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| N4S17_RS09575 (1971227) | 1971227..1971715 | - | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| N4S17_RS09580 (1971708) | 1971708..1972202 | - | 495 | WP_001221953.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| N4S17_RS09585 (1972202) | 1972202..1973905 | - | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| N4S17_RS09590 (1973902) | 1973902..1975080 | - | 1179 | WP_000017694.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| N4S17_RS09595 (1975070) | 1975070..1976056 | - | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| N4S17_RS09600 (1976059) | 1976059..1977177 | - | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| N4S17_RS09605 (1977366) | 1977366..1977653 | - | 288 | WP_001059136.1 | DUF2623 family protein YghW | - |
| N4S17_RS09610 (1977772) | 1977772..1978659 | - | 888 | WP_001297303.1 | YghX family hydrolase | - |
| N4S17_RS09615 (1978816) | 1978816..1979856 | + | 1041 | WP_000262156.1 | L-glyceraldehyde 3-phosphate reductase | - |
| N4S17_RS09620 (1979896) | 1979896..1980390 | - | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| N4S17_RS09625 (1980581) | 1980581..1981465 | + | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| N4S17_RS09630 (1981737) | 1981737..1982162 | - | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| N4S17_RS09635 (1982169) | 1982169..1982903 | - | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| N4S17_RS09640 (1983155) | 1983155..1984342 | + | 1188 | WP_000763931.1 | cystathionine beta-lyase | - |
| N4S17_RS09645 (1984482) | 1984482..1985141 | + | 660 | WP_000268419.1 | DedA family general envelope maintenance protein YghB | - |
| N4S17_RS09650 (1985181) | 1985181..1986080 | - | 900 | WP_000817717.1 | DNA-binding transcriptional regulator YqhC | - |
| N4S17_RS09655 (1986274) | 1986274..1987437 | + | 1164 | WP_001058807.1 | alcohol dehydrogenase | - |
| N4S17_RS09660 (1987542) | 1987542..1988369 | + | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| N4S17_RS09665 (1988569) | 1988569..1989495 | + | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|