MGE detailed information
MGE type: Conjugative plasmid MGE length: 138718 bp
Accession: NZ_CP104452 Location: 1..138718 Organism: Raoultella ornithinolytica strain MQB_Silv_108 Replicon: plasmid pIncFIB_Silv108
Accession: NZ_CP104452 Location: 1..138718 Organism: Raoultella ornithinolytica strain MQB_Silv_108 Replicon: plasmid pIncFIB_Silv108
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2J37_RS28765 (N2J37_28765) | 1..221 | + | 221 | WP_193938092.1 | EamA family transporter | - |
| N2J37_RS28770 (N2J37_28770) | 218..553 | + | 336 | WP_016236507.1 | hypothetical protein | - |
| N2J37_RS28775 (N2J37_28775) | 775..1796 | + | 1022 | Protein_2 | IS110 family transposase IS1618 | Transposase |
| N2J37_RS28780 (N2J37_28780) | 1893..2597 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N2J37_RS28785 (N2J37_28785) | 2912..3412 | + | 501 | WP_001752509.1 | non-heme ferritin-like protein | - |
| N2J37_RS28790 (N2J37_28790) | 3729..4709 | - | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| N2J37_RS28795 (N2J37_28795) | 4987..5268 | - | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| N2J37_RS28800 (N2J37_28800) | 5249..5578 | - | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N2J37_RS28805 (N2J37_28805) | 5988..6296 | + | 309 | Protein_8 | Tn3 family transposase | - |
| N2J37_RS28810 (N2J37_28810) | 6375..7379 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| N2J37_RS28815 (N2J37_28815) | 7839..8159 | + | 321 | WP_001137910.1 | DUF134 domain-containing protein | - |
| N2J37_RS28820 (N2J37_28820) | 8134..8595 | + | 462 | WP_000626969.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| N2J37_RS28825 (N2J37_28825) | 8756..9193 | + | 438 | WP_016241611.1 | PaaI family thioesterase | - |
| N2J37_RS28830 (N2J37_28830) | 9308..9784 | + | 477 | WP_000043177.1 | hypothetical protein | VF |
| N2J37_RS28835 (N2J37_28835) | 10089..10439 | - | 351 | WP_000928911.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| N2J37_RS28840 (N2J37_28840) | 10601..12259 | + | 1659 | WP_078309976.1 | FAD-dependent oxidoreductase | - |
| N2J37_RS28845 (N2J37_28845) | 12505..12969 | + | 465 | WP_001243598.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| N2J37_RS28850 (N2J37_28850) | 13249..14229 | - | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| N2J37_RS28855 (N2J37_28855) | 14312..14563 | - | 252 | Protein_18 | IS6 family transposase ISEas1 | Transposase |
| N2J37_RS28860 (N2J37_28860) | 15062..15385 | + | 324 | WP_017900603.1 | DUF1778 domain-containing protein | - |
| N2J37_RS28865 (N2J37_28865) | 15369..15917 | + | 549 | WP_017900604.1 | GNAT family N-acetyltransferase | - |
| N2J37_RS28870 (N2J37_28870) | 16182..16313 | - | 132 | Protein_21 | IS5/IS1182 family transposase | - |
| N2J37_RS28875 (N2J37_28875) | 16420..19101 | - | 2682 | WP_032744126.1 | AAA family ATPase | - |
| N2J37_RS28880 (N2J37_28880) | 19387..20319 | - | 933 | WP_020805035.1 | S-4TM family putative pore-forming effector | - |
| N2J37_RS28885 (N2J37_28885) | 20323..21318 | - | 996 | WP_032744124.1 | hypothetical protein | - |
| N2J37_RS28890 (N2J37_28890) | 21749..21853 | - | 105 | Protein_25 | reverse transcriptase/maturase | - |
| N2J37_RS28895 (N2J37_28895) | 21942..22349 | - | 408 | WP_004364961.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| N2J37_RS28900 (N2J37_28900) | 22445..23341 | + | 897 | WP_004364974.1 | cation transporter | - |
| N2J37_RS28905 (N2J37_28905) | 23345..23857 | + | 513 | WP_003821921.1 | Lipoprotein signal peptidase | VF |
| N2J37_RS28910 (N2J37_28910) | 23879..25168 | + | 1290 | WP_004574636.1 | ISL3 family transposase ISPst9 | Transposase |
| N2J37_RS28915 (N2J37_28915) | 25304..25447 | + | 144 | Protein_30 | transposase | - |
| N2J37_RS28920 (N2J37_28920) | 26199..28391 | + | 2193 | WP_032743941.1 | 1,4-alpha-glucan branching enzyme | - |
| N2J37_RS28925 (N2J37_28925) | 28521..29804 | + | 1284 | WP_032690514.1 | glucose-1-phosphate adenylyltransferase | - |
| N2J37_RS28930 (N2J37_28930) | 29894..31327 | + | 1434 | WP_004197677.1 | glycogen synthase GlgA | - |
| N2J37_RS28935 (N2J37_28935) | 31346..33793 | + | 2448 | WP_032690516.1 | glycogen phosphorylase | - |
| N2J37_RS28940 (N2J37_28940) | 33898..35541 | + | 1644 | WP_032743938.1 | phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) | - |
| N2J37_RS28945 (N2J37_28945) | 35688..36257 | + | 570 | WP_032743937.1 | helix-turn-helix transcriptional regulator | - |
| N2J37_RS28950 (N2J37_28950) | 36341..36772 | - | 432 | WP_050597435.1 | MFS transporter | - |
| N2J37_RS28955 (N2J37_28955) | 36942..37145 | - | 204 | WP_049077905.1 | HHA domain-containing protein | - |
| N2J37_RS28960 (N2J37_28960) | 37179..37547 | - | 369 | WP_048293716.1 | hypothetical protein | - |
| N2J37_RS28965 (N2J37_28965) | 37591..38085 | - | 495 | WP_048293717.1 | hypothetical protein | - |
| N2J37_RS28970 (N2J37_28970) | 38116..38691 | - | 576 | WP_020317495.1 | hypothetical protein | - |
| N2J37_RS28975 (N2J37_28975) | 38679..38948 | - | 270 | WP_020804424.1 | hypothetical protein | - |
| N2J37_RS28980 (N2J37_28980) | 39262..39441 | + | 180 | WP_003026777.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| N2J37_RS28985 (N2J37_28985) | 39428..39526 | + | 99 | WP_004118688.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N2J37_RS28990 (N2J37_28990) | 39563..39725 | + | 163 | Protein_45 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N2J37_RS28995 (N2J37_28995) | 39905..40339 | - | 435 | WP_004118347.1 | hypothetical protein | - |
| N2J37_RS29000 (N2J37_29000) | 40555..41955 | - | 1401 | WP_002436614.1 | copper resistance membrane spanning protein PcoS | - |
| N2J37_RS29005 (N2J37_29005) | 41952..42632 | - | 681 | WP_001188930.1 | Transcriptional activator protein CopR | VF |
| N2J37_RS29010 (N2J37_29010) | 42687..43616 | - | 930 | WP_004118344.1 | copper resistance inner membrane protein PcoD | - |
| N2J37_RS29015 (N2J37_29015) | 43621..44001 | - | 381 | WP_000025662.1 | copper resistance system metallochaperone PcoC | - |
| N2J37_RS29020 (N2J37_29020) | 44041..44931 | - | 891 | WP_001378118.1 | copper resistance outer membrane transporter PcoB | - |
| N2J37_RS29025 (N2J37_29025) | 44937..46754 | - | 1818 | WP_000925242.1 | multicopper oxidase PcoA | - |
| N2J37_RS29030 (N2J37_29030) | 46989..47438 | + | 450 | WP_001023257.1 | copper resistance protein | - |
| N2J37_RS29035 (N2J37_29035) | 47727..48464 | + | 738 | WP_004118669.1 | Murein DD-endopeptidase MepM | VF |
| N2J37_RS29040 (N2J37_29040) | 48498..48695 | - | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| N2J37_RS29045 (N2J37_29045) | 48736..51207 | - | 2472 | WP_128306664.1 | Ag(+)-translocating P-type ATPase SilP | - |
| N2J37_RS29050 (N2J37_29050) | 51305..51745 | - | 441 | WP_002436620.1 | DUF411 domain-containing protein | - |
| N2J37_RS29055 (N2J37_29055) | 51832..54978 | - | 3147 | WP_076752081.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| N2J37_RS29060 (N2J37_29060) | 54989..56281 | - | 1293 | WP_023602553.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| N2J37_RS29065 (N2J37_29065) | 56395..56748 | - | 354 | WP_001246153.1 | cation efflux system protein CusF | - |
| N2J37_RS29070 (N2J37_29070) | 56777..58162 | - | 1386 | WP_260990877.1 | Cation efflux system protein CusC | VF |
| N2J37_RS29075 (N2J37_29075) | 58352..59032 | + | 681 | WP_000697968.1 | Transcriptional regulatory protein CusR | VF |
| N2J37_RS29080 (N2J37_29080) | 59025..60500 | + | 1476 | WP_004118652.1 | copper/silver sensor histidine kinase SilS | - |
| N2J37_RS29085 (N2J37_29085) | 60751..61182 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| N2J37_RS29090 (N2J37_29090) | 61326..61676 | + | 351 | WP_015387186.1 | DUF305 domain-containing protein | - |
| N2J37_RS29095 (N2J37_29095) | 62090..62998 | - | 909 | WP_001372261.1 | HNH endonuclease | - |
| N2J37_RS29100 (N2J37_29100) | 63636..64610 | + | 975 | WP_069602500.1 | sensor domain-containing diguanylate cyclase | - |
| N2J37_RS29105 (N2J37_29105) | 65179..65541 | + | 363 | WP_000533745.1 | hypothetical protein | - |
| N2J37_RS29110 (N2J37_29110) | 65559..66368 | + | 810 | WP_047727565.1 | hypothetical protein | - |
| N2J37_RS29115 (N2J37_29115) | 66933..68606 | + | 1674 | WP_000026497.1 | hypothetical protein | - |
| N2J37_RS29120 (N2J37_29120) | 68831..69103 | + | 273 | WP_155075505.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| N2J37_RS29125 (N2J37_29125) | 69090..69420 | + | 331 | Protein_72 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N2J37_RS29130 (N2J37_29130) | 69444..69719 | - | 276 | WP_155075503.1 | hypothetical protein | - |
| N2J37_RS29135 (N2J37_29135) | 69752..70492 | + | 741 | WP_022064517.1 | tyrosine-type recombinase/integrase | - |
| N2J37_RS29140 (N2J37_29140) | 71190..72200 | - | 1011 | WP_000200070.1 | RepB family plasmid replication initiator protein | - |
| N2J37_RS29145 (N2J37_29145) | 72951..74117 | + | 1167 | WP_000523812.1 | hypothetical protein | VF |
| N2J37_RS29150 (N2J37_29150) | 74117..75088 | + | 972 | WP_076752159.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| N2J37_RS29155 (N2J37_29155) | 76414..76719 | - | 306 | WP_047368871.1 | hypothetical protein | - |
| N2J37_RS29160 (N2J37_29160) | 76773..77024 | - | 252 | WP_004206783.1 | plasmid stabilization protein | - |
| N2J37_RS29165 (N2J37_29165) | 77103..78374 | - | 1272 | WP_004206782.1 | Y-family DNA polymerase | - |
| N2J37_RS29170 (N2J37_29170) | 78374..78799 | - | 426 | WP_009309980.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N2J37_RS29175 (N2J37_29175) | 79014..79244 | + | 231 | WP_004206779.1 | hypothetical protein | - |
| N2J37_RS29180 (N2J37_29180) | 79765..80190 | + | 426 | WP_004206777.1 | antirestriction protein | - |
| N2J37_RS29185 (N2J37_29185) | 80427..80681 | + | 255 | WP_047727563.1 | DNA polymerase III subunit theta | - |
| N2J37_RS29190 (N2J37_29190) | 80716..81036 | + | 321 | WP_032426243.1 | hypothetical protein | - |
| N2J37_RS29195 (N2J37_29195) | 81625..82167 | + | 543 | WP_004206772.1 | single-stranded DNA-binding protein | - |
| N2J37_RS29200 (N2J37_29200) | 82216..82464 | + | 249 | WP_004206771.1 | DUF905 domain-containing protein | - |
| N2J37_RS29205 (N2J37_29205) | 82533..84532 | + | 2000 | Protein_88 | ParB/RepB/Spo0J family partition protein | - |
| N2J37_RS29210 (N2J37_29210) | 84577..85008 | + | 432 | WP_038992715.1 | conjugation system SOS inhibitor PsiB | - |
| N2J37_RS29215 (N2J37_29215) | 85005..85733 | + | 729 | WP_040107916.1 | plasmid SOS inhibition protein A | - |
| N2J37_RS29220 (N2J37_29220) | 85730..86056 | + | 327 | WP_038992719.1 | hypothetical protein | - |
| N2J37_RS29225 (N2J37_29225) | 86245..87614 | + | 1370 | WP_087654045.1 | IS3 family transposase ISKpn8 | Transposase |
| N2J37_RS29230 (N2J37_29230) | 87832..88182 | + | 351 | WP_012540252.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| N2J37_RS29235 (N2J37_29235) | 88230..88592 | + | 363 | WP_012540111.1 | arsenite efflux transporter metallochaperone ArsD | - |
| N2J37_RS29240 (N2J37_29240) | 88610..90361 | + | 1752 | WP_137055843.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| N2J37_RS29245 (N2J37_29245) | 90409..91698 | + | 1290 | WP_012540054.1 | arsenite efflux transporter membrane subunit ArsB | - |
| N2J37_RS29250 (N2J37_29250) | 91711..92136 | + | 426 | WP_013087165.1 | glutaredoxin-dependent arsenate reductase | - |
| N2J37_RS29255 (N2J37_29255) | 92171..92707 | - | 537 | WP_013087166.1 | Phosphinothricin N-acetyltransferase | VF |
| N2J37_RS29260 (N2J37_29260) | 92832..94583 | - | 1752 | WP_175406650.1 | Arsenical pump-driving ATPase | VF |
| N2J37_RS29265 (N2J37_29265) | 94610..94972 | - | 363 | WP_013087168.1 | arsenic metallochaperone ArsD family protein | - |
| N2J37_RS29270 (N2J37_29270) | 95048..95593 | - | 546 | WP_047365773.1 | sigma-70 family RNA polymerase sigma factor | - |
| N2J37_RS29275 (N2J37_29275) | 95602..96315 | - | 714 | WP_013087170.1 | arsenical resistance protein ArsH | - |
| N2J37_RS29280 (N2J37_29280) | 96317..96640 | - | 324 | WP_013087171.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| N2J37_RS29285 (N2J37_29285) | 96941..97207 | + | 267 | WP_012540086.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| N2J37_RS29290 (N2J37_29290) | 97195..97680 | + | 486 | WP_076752153.1 | GNAT family N-acetyltransferase | Toxin Detail |
| N2J37_RS29295 (N2J37_29295) | 97964..98116 | + | 153 | WP_223526259.1 | DUF5431 family protein | - |
| N2J37_RS29300 (N2J37_29300) | 98064..98180 | + | 117 | WP_223176086.1 | type I toxin-antitoxin system Hok family toxin | - |
| N2J37_RS29305 (N2J37_29305) | 99085..99357 | + | 273 | WP_137055850.1 | hypothetical protein | - |
| N2J37_RS29310 (N2J37_29310) | 99460..99807 | + | 348 | WP_076752140.1 | hypothetical protein | - |
| N2J37_RS29315 (N2J37_29315) | 99896..100126 | + | 231 | WP_076752138.1 | hypothetical protein | - |
| N2J37_RS29320 (N2J37_29320) | 100173..101006 | + | 834 | WP_076752137.1 | N-6 DNA methylase | - |
| N2J37_RS29325 (N2J37_29325) | 101210..101440 | - | 231 | WP_076752135.1 | hypothetical protein | - |
| N2J37_RS29330 (N2J37_29330) | 101632..102162 | + | 531 | WP_076752134.1 | antirestriction protein | - |
| N2J37_RS29335 (N2J37_29335) | 102200..102676 | - | 477 | WP_076752132.1 | hypothetical protein | VF |
| N2J37_RS29340 (N2J37_29340) | 103108..103500 | + | 393 | WP_032736874.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| N2J37_RS29345 (N2J37_29345) | 103739..104440 | + | 702 | WP_223526258.1 | hypothetical protein | - |
| N2J37_RS29350 (N2J37_29350) | 104525..104725 | + | 201 | WP_060415469.1 | TraY domain-containing protein | - |
| N2J37_RS29355 (N2J37_29355) | 104794..105162 | + | 369 | WP_032736871.1 | type IV conjugative transfer system pilin TraA | - |
| N2J37_RS29360 (N2J37_29360) | 105176..105481 | + | 306 | WP_032736870.1 | type IV conjugative transfer system protein TraL | - |
| N2J37_RS29365 (N2J37_29365) | 105501..106067 | + | 567 | WP_032736869.1 | type IV conjugative transfer system protein TraE | - |
| N2J37_RS29370 (N2J37_29370) | 106054..106788 | + | 735 | WP_032736867.1 | type-F conjugative transfer system secretin TraK | - |
| N2J37_RS29375 (N2J37_29375) | 106788..108209 | + | 1422 | WP_032736866.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| N2J37_RS29380 (N2J37_29380) | 108202..108363 | + | 162 | WP_154235504.1 | hypothetical protein | - |
| N2J37_RS29385 (N2J37_29385) | 108383..108952 | + | 570 | WP_042946293.1 | type IV conjugative transfer system lipoprotein TraV | - |
| N2J37_RS29390 (N2J37_29390) | 109064..109342 | + | 279 | WP_032736865.1 | hypothetical protein | - |
| N2J37_RS29395 (N2J37_29395) | 109427..109828 | + | 402 | WP_032736864.1 | hypothetical protein | - |
| N2J37_RS29400 (N2J37_29400) | 109825..110124 | + | 300 | WP_032736863.1 | hypothetical protein | - |
| N2J37_RS29405 (N2J37_29405) | 110212..110595 | + | 384 | WP_042946290.1 | hypothetical protein | - |
| N2J37_RS29410 (N2J37_29410) | 110688..113327 | + | 2640 | WP_032736861.1 | type IV secretion system protein TraC | - |
| N2J37_RS29415 (N2J37_29415) | 113327..113716 | + | 390 | WP_032736860.1 | type-F conjugative transfer system protein TrbI | - |
| N2J37_RS29420 (N2J37_29420) | 113713..114339 | + | 627 | WP_042946288.1 | type-F conjugative transfer system protein TraW | - |
| N2J37_RS29425 (N2J37_29425) | 114383..115342 | + | 960 | WP_088912317.1 | conjugal transfer pilus assembly protein TraU | - |
| N2J37_RS29430 (N2J37_29430) | 115355..115981 | + | 627 | WP_032736857.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| N2J37_RS29435 (N2J37_29435) | 115978..117921 | + | 1944 | WP_032736856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| N2J37_RS29440 (N2J37_29440) | 118035..118646 | + | 612 | WP_032736855.1 | hypothetical protein | - |
| N2J37_RS29445 (N2J37_29445) | 118636..118872 | + | 237 | WP_076752122.1 | conjugal transfer protein TrbE | - |
| N2J37_RS29450 (N2J37_29450) | 118869..119054 | + | 186 | WP_032736852.1 | hypothetical protein | - |
| N2J37_RS29455 (N2J37_29455) | 119101..119427 | + | 327 | WP_032736851.1 | hypothetical protein | - |
| N2J37_RS29460 (N2J37_29460) | 119448..120200 | + | 753 | WP_042946285.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| N2J37_RS29465 (N2J37_29465) | 120211..120447 | + | 237 | WP_032736848.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| N2J37_RS29470 (N2J37_29470) | 120434..120997 | + | 564 | WP_224250969.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| N2J37_RS29475 (N2J37_29475) | 120984..122354 | + | 1371 | WP_076752120.1 | conjugal transfer pilus assembly protein TraH | - |
| N2J37_RS29480 (N2J37_29480) | 122354..125197 | + | 2844 | WP_076752118.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| N2J37_RS29485 (N2J37_29485) | 125208..125735 | + | 528 | WP_032736843.1 | hypothetical protein | - |
| N2J37_RS29490 (N2J37_29490) | 125942..128236 | + | 2295 | WP_032736842.1 | type IV conjugative transfer system coupling protein TraD | - |
| N2J37_RS29495 (N2J37_29495) | 128236..133494 | + | 5259 | WP_076752116.1 | Multifunctional conjugation protein TraI | Relaxase |
| N2J37_RS29500 (N2J37_29500) | 133578..134297 | + | 720 | WP_032736839.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| N2J37_RS29505 (N2J37_29505) | 134458..135051 | + | 594 | WP_009653903.1 | fertility inhibition protein FinO | - |
| N2J37_RS29510 (N2J37_29510) | 135164..135955 | + | 792 | WP_076752115.1 | DsbA family protein | - |
| N2J37_RS29515 (N2J37_29515) | 135995..136249 | + | 255 | Protein_150 | hypothetical protein | - |
| N2J37_RS29520 (N2J37_29520) | 136235..136336 | + | 102 | Protein_151 | hypothetical protein | - |
| N2J37_RS29525 (N2J37_29525) | 136439..136981 | + | 543 | WP_032736899.1 | Cardiolipin synthase B | VF |
| N2J37_RS29530 (N2J37_29530) | 137119..137388 | + | 270 | WP_032736837.1 | replication regulatory protein RepA | - |
| N2J37_RS29535 (N2J37_29535) | 137670..138542 | + | 873 | WP_009653904.1 | incFII family plasmid replication initiator RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|