MGE detailed information
MGE type: Genomic_island MGE length: 12810 bp
Accession: NZ_CP104328 Location: 2287321..2300130 Organism: Escherichia coli strain THB42-F2 Replicon: chromosome
Accession: NZ_CP104328 Location: 2287321..2300130 Organism: Escherichia coli strain THB42-F2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0499_RS11115 (2287321) | 2287321..2287587 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| N0499_RS11120 (2287587) | 2287587..2288909 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| N0499_RS11125 (2289221) | 2289221..2289429 | + | 209 | Protein_2173 | AraC family transcriptional regulator | - |
| N0499_RS11130 (2289684) | 2289684..2290910 | + | 1227 | Protein_2174 | NADH-specific methylglyoxal reductase | VF |
| N0499_RS11135 (2290924) | 2290924..2291454 | + | 531 | WP_000876763.1 | Ribose operon repressor | VF |
| N0499_RS11140 (2291467) | 2291467..2291970 | + | 504 | WP_000825452.1 | Autoinducer 2 import system permease protein LsrD | VF |
| N0499_RS11145 (2292029) | 2292029..2292943 | + | 915 | WP_000520676.1 | Autoinducer 2-binding protein LsrB | VF |
| N0499_RS11150 (2293277) | 2293277..2295556 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| N0499_RS11155 (2295804) | 2295804..2296001 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| N0499_RS11160 (2296076) | 2296076..2296837 | + | 762 | WP_000060495.1 | acid stress response transcriptional regulator YdeO | - |
| N0499_RS11165 (2297239) | 2297239..2298921 | + | 1683 | WP_001295684.1 | sulfatase | - |
| N0499_RS11170 (2298973) | 2298973..2300130 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| N0499_RS11175 (2300096) | 2300096..2300218 | - | 123 | WP_120795387.1 | protein YneP | - |
| N0499_RS11180 (2300421) | 2300421..2302106 | + | 1686 | WP_072647341.1 | ABC transporter ATP-binding protein/permease | - |
| N0499_RS11185 (2302144) | 2302144..2304516 | + | 2373 | WP_000832437.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.003 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.003 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.003 |