MGE detailed information
MGE type: Genomic_island MGE length: 20029 bp
Accession: NZ_CP104326 Location: 3982044..4002072 Organism: Escherichia coli strain THB42-F1 Replicon: chromosome
Accession: NZ_CP104326 Location: 3982044..4002072 Organism: Escherichia coli strain THB42-F1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0470_RS19410 (3977523) | 3977523..3978026 | - | 504 | WP_072647342.1 | type 1 fimbria minor subunit FimG | - |
| N0470_RS19415 (3978039) | 3978039..3978569 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| N0470_RS19420 (3978579) | 3978579..3981215 | - | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| N0470_RS19425 (3981282) | 3981282..3982007 | - | 726 | WP_000066547.1 | type 1 fimbria chaperone FimC | - |
| N0470_RS19430 (3982044) | 3982044..3982583 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| N0470_RS19435 (3982648) | 3982648..3983196 | - | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| N0470_RS19440 (3983678) | 3983678..3984232 | - | 555 | WP_000983104.1 | Tyrosine recombinase XerD | VF |
| N0470_RS19450 (3985528) | 3985528..3986130 | - | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| N0470_RS19455 (3987586) | 3987586..3988302 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| N0470_RS19460 (3988322) | 3988322..3989428 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| N0470_RS19465 (3989493) | 3989493..3990473 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| N0470_RS19470 (3990583) | 3990583..3990788 | + | 206 | Protein_3803 | HNH endonuclease | - |
| N0470_RS19475 (3991056) | 3991056..3992296 | - | 1241 | Protein_3804 | helicase YjhR | - |
| N0470_RS19480 (3992412) | 3992412..3992543 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| N0470_RS19485 (3993034) | 3993034..3993291 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| N0470_RS19490 (3993303) | 3993303..3993848 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| N0470_RS19495 (3993904) | 3993904..3994650 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| N0470_RS19500 (3994819) | 3994819..3995037 | + | 219 | Protein_3809 | hypothetical protein | - |
| N0470_RS19505 (3995075) | 3995075..3995191 | + | 117 | Protein_3810 | VOC family protein | - |
| N0470_RS19510 (3995436) | 3995436..3996557 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| N0470_RS19515 (3996554) | 3996554..3996832 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| N0470_RS19520 (3996844) | 3996844..3998157 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| N0470_RS19525 (3998170) | 3998170..3998976 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| N0470_RS19530 (3999107) | 3999107..3999538 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| N0470_RS19535 (3999550) | 3999550..4000182 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| N0470_RS19540 (4000199) | 4000199..4000981 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| N0470_RS19545 (4001284) | 4001284..4002072 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| N0470_RS19550 (4002077) | 4002077..4002982 | + | 906 | WP_000714563.1 | dihydrodipicolinate synthase family protein | - |
| N0470_RS19555 (4002993) | 4002993..4004960 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| N0470_RS19560 (4005067) | 4005067..4006416 | + | 1350 | WP_001128363.1 | GntP family permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|