MGE detailed information
MGE type: Prophage MGE length: 64400 bp
Accession: NZ_CP104206 Location: 2329757..2394156 Organism: Escherichia coli strain hubt-sl Replicon: chromosome
Accession: NZ_CP104206 Location: 2329757..2394156 Organism: Escherichia coli strain hubt-sl Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1H45_RS11320 (2328315) | 2328315..2329523 | - | 1209 | WP_001339197.1 | IS4-like element ISVsa5 family transposase | - |
| N1H45_RS11325 (2329622) | 2329622..2330095 | + | 474 | WP_077631333.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N1H45_RS11330 (2330193) | 2330193..2330768 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| N1H45_RS11335 (2330768) | 2330768..2333842 | - | 3075 | WP_000279140.1 | phage tail protein | - |
| N1H45_RS11340 (2333907) | 2333907..2334506 | - | 600 | WP_001233072.1 | hypothetical protein | VF |
| N1H45_RS11345 (2334577) | 2334577..2337990 | - | 3414 | WP_000033679.1 | host specificity protein J | - |
| N1H45_RS11350 (2338051) | 2338051..2338623 | - | 573 | WP_000847666.1 | tail assembly protein | - |
| N1H45_RS11355 (2338620) | 2338620..2339363 | - | 744 | WP_001349921.1 | C40 family peptidase | - |
| N1H45_RS11360 (2339369) | 2339369..2340067 | - | 699 | WP_001152622.1 | phage minor tail protein L | - |
| N1H45_RS11365 (2340067) | 2340067..2340396 | - | 330 | WP_000847360.1 | phage tail protein | - |
| N1H45_RS11370 (2340393) | 2340393..2342954 | - | 2562 | WP_000840335.1 | phage tail tape measure protein | - |
| N1H45_RS11375 (2342947) | 2342947..2343381 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| N1H45_RS11380 (2343363) | 2343363..2343785 | - | 423 | WP_000479150.1 | phage minor tail protein G | - |
| N1H45_RS11385 (2343801) | 2343801..2344541 | - | 741 | WP_001349920.1 | phage tail protein | - |
| N1H45_RS11390 (2344549) | 2344549..2344944 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| N1H45_RS11395 (2344941) | 2344941..2345519 | - | 579 | WP_000985119.1 | phage tail protein | - |
| N1H45_RS11400 (2345531) | 2345531..2345884 | - | 354 | WP_000753007.1 | head-tail joining protein | - |
| N1H45_RS11405 (2345896) | 2345896..2346294 | - | 399 | WP_000158921.1 | DNA-packaging protein FI | - |
| N1H45_RS11410 (2346336) | 2346336..2347361 | - | 1026 | WP_000063280.1 | major capsid protein | - |
| N1H45_RS11415 (2347417) | 2347417..2347749 | - | 333 | WP_001295978.1 | head decoration protein | - |
| N1H45_RS11420 (2347759) | 2347759..2349078 | - | 1320 | WP_000123305.1 | S49 family peptidase | - |
| N1H45_RS11425 (2349059) | 2349059..2350660 | - | 1602 | WP_001349919.1 | phage portal protein | - |
| N1H45_RS11430 (2350657) | 2350657..2350863 | - | 207 | WP_000198149.1 | gpW family protein | - |
| N1H45_RS11435 (2350860) | 2350860..2352785 | - | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| N1H45_RS11440 (2352760) | 2352760..2353305 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| N1H45_RS11445 (2353694) | 2353694..2353927 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N1H45_RS11450 (2353985) | 2353985..2354395 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N1H45_RS11455 (2354547) | 2354547..2354720 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N1H45_RS11460 (2354892) | 2354892..2355047 | - | 156 | WP_001309517.1 | protein YnfN | - |
| N1H45_RS11465 (2355127) | 2355127..2355192 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| N1H45_RS11470 (2355195) | 2355195..2355383 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| N1H45_RS11475 (2355394) | 2355394..2355606 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N1H45_RS11480 (2355969) | 2355969..2356466 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N1H45_RS11485 (2356463) | 2356463..2356996 | - | 534 | WP_001092971.1 | lysozyme | - |
| N1H45_RS11490 (2356993) | 2356993..2357304 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| N1H45_RS11495 (2357309) | 2357309..2357524 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N1H45_RS11500 (2357744) | 2357744..2357914 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N1H45_RS11505 (2358278) | 2358278..2358493 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N1H45_RS11510 (2358794) | 2358794..2359006 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N1H45_RS11515 (2359061) | 2359061..2359150 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| N1H45_RS11520 (2359428) | 2359428..2360180 | - | 753 | WP_001047135.1 | antitermination protein | - |
| N1H45_RS11525 (2360194) | 2360194..2361243 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| N1H45_RS11530 (2361245) | 2361245..2361523 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| N1H45_RS11535 (2361590) | 2361590..2361841 | - | 252 | WP_000980994.1 | protein Rem | - |
| N1H45_RS11540 (2362058) | 2362058..2362213 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N1H45_RS11545 (2362285) | 2362285..2362572 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N1H45_RS11550 (2362572) | 2362572..2362811 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N1H45_RS11555 (2362836) | 2362836..2363141 | + | 306 | WP_001326990.1 | protein YdfV | - |
| N1H45_RS11560 (2363344) | 2363344..2363676 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N1H45_RS11565 (2364113) | 2364113..2364262 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| N1H45_RS11570 (2364383) | 2364383..2365405 | - | 1023 | Protein_2264 | ISNCY family transposase ISCARN112 | Transposase |
| N1H45_RS11575 (2366195) | 2366195..2366482 | - | 288 | Protein_2265 | hypothetical protein | - |
| N1H45_RS11580 (2366960) | 2366960..2367449 | - | 490 | Protein_2266 | class I SAM-dependent methyltransferase | - |
| N1H45_RS11585 (2367446) | 2367446..2367868 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| N1H45_RS11590 (2367909) | 2367909..2368874 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| N1H45_RS11595 (2368855) | 2368855..2369376 | - | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| N1H45_RS11600 (2369360) | 2369360..2369590 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N1H45_RS11605 (2369674) | 2369674..2370081 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N1H45_RS11610 (2370248) | 2370248..2370403 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N1H45_RS11615 (2370405) | 2370405..2370533 | + | 129 | WP_000344964.1 | protein YdfB | - |
| N1H45_RS11620 (2370563) | 2370563..2370781 | + | 219 | WP_001171942.1 | protein YdfC | - |
| N1H45_RS11625 (2371349) | 2371349..2371537 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N1H45_RS11630 (2371534) | 2371534..2371725 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N1H45_RS11635 (2371818) | 2371818..2374295 | + | 2478 | WP_000048348.1 | exonuclease | - |
| N1H45_RS11640 (2374368) | 2374368..2374619 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N1H45_RS11645 (2374654) | 2374654..2375934 | + | 1281 | WP_000876956.1 | hypothetical protein ; Integrase | Integrase |
| N1H45_RS11650 (2376104) | 2376104..2377312 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| N1H45_RS11655 (2377460) | 2377460..2378479 | - | 1020 | WP_000836076.1 | Zn-dependent oxidoreductase | - |
| N1H45_RS11660 (2378491) | 2378491..2379705 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N1H45_RS11665 (2379911) | 2379911..2380237 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| N1H45_RS11670 (2380372) | 2380372..2380713 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| N1H45_RS11675 (2380748) | 2380748..2381308 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N1H45_RS11680 (2381311) | 2381311..2382021 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N1H45_RS11685 (2382129) | 2382129..2382434 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| N1H45_RS11690 (2382633) | 2382633..2385059 | + | 2427 | WP_000041685.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N1H45_RS11695 (2385120) | 2385120..2387543 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N1H45_RS11700 (2387554) | 2387554..2388171 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N1H45_RS11705 (2388173) | 2388173..2389027 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N1H45_RS11710 (2389070) | 2389070..2389684 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N1H45_RS11715 (2389843) | 2389843..2391135 | + | 1293 | WP_071524606.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N1H45_RS11720 (2391088) | 2391088..2391783 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N1H45_RS11725 (2391908) | 2391908..2393128 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| N1H45_RS11730 (2393263) | 2393263..2394156 | - | 894 | WP_001019544.1 | hypothetical protein | VF |
| N1H45_RS11735 (2394263) | 2394263..2395516 | + | 1254 | WP_000091840.1 | MFS transporter | - |
| N1H45_RS11740 (2395940) | 2395940..2396248 | + | 309 | WP_001342195.1 | acid resistance repetitive basic protein Asr | - |
| N1H45_RS11745 (2396341) | 2396341..2396424 | + | 84 | WP_000233090.1 | hypothetical protein | - |
| N1H45_RS11750 (2396524) | 2396524..2397345 | + | 822 | WP_001260855.1 | serine protease | - |
| N1H45_RS11755 (2397384) | 2397384..2397713 | - | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| N1H45_RS11760 (2397700) | 2397700..2398065 | - | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|