MGE detailed information
MGE type: Conjugative plasmid MGE length: 126915 bp
Accession: NZ_CP104118 Location: 1..126915 Organism: Escherichia coli strain USDA-ARS-USMARC-50748 Replicon: plasmid pEc1-50748
Accession: NZ_CP104118 Location: 1..126915 Organism: Escherichia coli strain USDA-ARS-USMARC-50748 Replicon: plasmid pEc1-50748
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1709_RS23960 (N1709_23960) | 442..1731 | + | 1290 | WP_000121923.1 | IncI1-type conjugal transfer protein TrbA | - |
| N1709_RS23965 (N1709_23965) | 1728..2846 | + | 1119 | WP_000155608.1 | DsbC family protein | - |
| N1709_RS23970 (N1709_23970) | 2827..5130 | + | 2304 | WP_000077655.1 | F-type conjugative transfer protein TrbC | - |
| N1709_RS23975 (N1709_23975) | 5598..5839 | + | 242 | Protein_3 | TonB-dependent receptor | - |
| N1709_RS23980 (N1709_23980) | 5937..6368 | - | 432 | WP_001335086.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
| N1709_RS23985 (N1709_23985) | 6436..9147 | - | 2712 | WP_000991386.1 | hypothetical protein | Relaxase |
| N1709_RS23990 (N1709_23990) | 9159..9491 | - | 333 | WP_001291058.1 | plasmid mobilization protein MobA | - |
| N1709_RS23995 (N1709_23995) | 9724..10059 | + | 336 | WP_000157096.1 | hypothetical protein | - |
| N1709_RS24000 (N1709_24000) | 10144..10992 | - | 849 | WP_001077046.1 | DUF4942 domain-containing protein | - |
| N1709_RS24005 (N1709_24005) | 11571..11822 | + | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| N1709_RS24010 (N1709_24010) | 11853..12074 | - | 222 | WP_009453089.1 | hypothetical protein | - |
| N1709_RS24015 (N1709_24015) | 12074..13000 | - | 927 | WP_000038345.1 | ISNCY family transposase ISRor2 | VF |
| N1709_RS24020 (N1709_24020) | 12997..13386 | - | 390 | WP_001317525.1 | hypothetical protein | - |
| N1709_RS24025 (N1709_24025) | 13577..13843 | - | 267 | WP_001247861.1 | hypothetical protein | - |
| N1709_RS24030 (N1709_24030) | 13936..14370 | - | 435 | WP_000218850.1 | hypothetical protein | - |
| N1709_RS24035 (N1709_24035) | 15101..15601 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| N1709_RS24040 (N1709_24040) | 16064..16660 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| N1709_RS24045 (N1709_24045) | 16657..17376 | - | 720 | WP_001276263.1 | plasmid SOS inhibition protein A | - |
| N1709_RS24050 (N1709_24050) | 17373..17807 | - | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| N1709_RS24055 (N1709_24055) | 17862..19820 | - | 1959 | WP_001145479.1 | ParB/RepB/Spo0J family partition protein | - |
| N1709_RS24060 (N1709_24060) | 19879..20112 | - | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| N1709_RS24065 (N1709_24065) | 20170..20697 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| N1709_RS24070 (N1709_24070) | 21081..21395 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| N1709_RS24075 (N1709_24075) | 21466..21657 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| N1709_RS24080 (N1709_24080) | 21657..22076 | - | 420 | WP_000271736.1 | DUF1380 family protein | - |
| N1709_RS24085 (N1709_24085) | 22123..22548 | - | 426 | WP_001198938.1 | antirestriction protein | - |
| N1709_RS24090 (N1709_24090) | 22966..23742 | - | 777 | WP_001005043.1 | hypothetical protein | - |
| N1709_RS24095 (N1709_24095) | 23788..24222 | - | 435 | WP_000274500.1 | DUF1380 family protein | - |
| N1709_RS24100 (N1709_24100) | 24236..24457 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| N1709_RS24105 (N1709_24105) | 24458..25141 | - | 684 | WP_000086152.1 | DNA methylase | - |
| N1709_RS24110 (N1709_24110) | 25218..25529 | - | 312 | WP_012680995.1 | hypothetical protein | - |
| N1709_RS24115 (N1709_24115) | 25526..26428 | - | 903 | WP_023842311.1 | DUF1281 domain-containing protein | - |
| N1709_RS24120 (N1709_24120) | 26846..27094 | + | 249 | WP_000619113.1 | DinI-like family protein | - |
| N1709_RS24125 (N1709_24125) | 27091..27528 | + | 438 | WP_000109077.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N1709_RS24130 (N1709_24130) | 27528..28799 | + | 1272 | WP_000457473.1 | Y-family DNA polymerase | - |
| N1709_RS24135 (N1709_24135) | 29011..29637 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| N1709_RS24140 (N1709_24140) | 29634..29936 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| N1709_RS24145 (N1709_24145) | 30383..30568 | + | 186 | Protein_37 | hypothetical protein | - |
| N1709_RS24150 (N1709_24150) | 30588..30935 | - | 348 | WP_000142445.1 | DUF6404 family protein | - |
| N1709_RS24155 (N1709_24155) | 31054..31401 | + | 348 | WP_000762572.1 | colicin E1 family microcin immunity protein | - |
| N1709_RS24160 (N1709_24160) | 31419..33152 | - | 1734 | WP_225379986.1 | colicin Ia central receptor-binding domain-containing protein | - |
| N1709_RS24165 (N1709_24165) | 33159..34910 | - | 1752 | Protein_41 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| N1709_RS24170 (N1709_24170) | 34914..35306 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| N1709_RS24175 (N1709_24175) | 35444..36328 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| N1709_RS24180 (N1709_24180) | 36360..37559 | - | 1200 | WP_021559057.1 | Tetracycline resistance protein, class C | ARG |
| N1709_RS24185 (N1709_24185) | 37665..38315 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| N1709_RS24190 (N1709_24190) | 38347..38589 | - | 243 | WP_000844627.1 | transposase | - |
| N1709_RS24195 (N1709_24195) | 38647..41613 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| N1709_RS24200 (N1709_24200) | 41617..42177 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| N1709_RS24205 (N1709_24205) | 42353..42703 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| N1709_RS24210 (N1709_24210) | 42906..43919 | - | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| N1709_RS24215 (N1709_24215) | 44065..44903 | + | 839 | Protein_51 | Streptomycin 3''-adenylyltransferase | ARG |
| N1709_RS24220 (N1709_24220) | 45023..45922 | + | 900 | WP_000131886.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| N1709_RS24225 (N1709_24225) | 46129..46449 | + | 321 | WP_000535481.1 | co-chaperone GroES | - |
| N1709_RS24230 (N1709_24230) | 46505..48142 | + | 1638 | WP_000719078.1 | 60 kDa chaperonin | VF |
| N1709_RS24235 (N1709_24235) | 48367..49860 | + | 1494 | WP_042038115.1 | IS91 family transposase ISVsa3 | Transposase |
| N1709_RS24240 (N1709_24240) | 50128..51363 | + | 1236 | WP_001137513.1 | IS256 family transposase ISEc58 | Transposase |
| N1709_RS24245 (N1709_24245) | 51581..51928 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| N1709_RS24250 (N1709_24250) | 51922..52761 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| N1709_RS24255 (N1709_24255) | 52889..53161 | + | 273 | WP_004883563.1 | hypothetical protein | - |
| N1709_RS24260 (N1709_24260) | 53343..54347 | - | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| N1709_RS24265 (N1709_24265) | 54485..55189 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| N1709_RS24270 (N1709_24270) | 55311..56216 | + | 906 | WP_040078663.1 | hypothetical protein | ARG |
| N1709_RS24275 (N1709_24275) | 56213..57451 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| N1709_RS24280 (N1709_24280) | 57451..58035 | + | 585 | WP_040078662.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| N1709_RS24285 (N1709_24285) | 58528..59292 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| N1709_RS24290 (N1709_24290) | 59410..59475 | - | 66 | Protein_66 | EAL domain-containing protein | - |
| N1709_RS24295 (N1709_24295) | 59519..59824 | - | 306 | WP_000130000.1 | Transcriptional regulator | Relaxase |
| N1709_RS24300 (N1709_24300) | 59835..61040 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| N1709_RS24305 (N1709_24305) | 61268..62272 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| N1709_RS24310 (N1709_24310) | 62551..62790 | - | 240 | Protein_70 | hypothetical protein | - |
| N1709_RS24315 (N1709_24315) | 63144..63746 | + | 603 | WP_000517694.1 | ProQ/FINO family protein | - |
| N1709_RS24320 (N1709_24320) | 64398..64943 | - | 546 | WP_000926984.1 | hypothetical protein | - |
| N1709_RS24325 (N1709_24325) | 64953..65240 | - | 288 | WP_000222775.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N1709_RS24330 (N1709_24330) | 65237..65488 | - | 252 | WP_001139207.1 | plasmid stabilization protein | Antitoxin Detail |
| N1709_RS24335 (N1709_24335) | 65575..65742 | - | 168 | WP_000841010.1 | hypothetical protein | - |
| N1709_RS24340 (N1709_24340) | 66437..67309 | - | 873 | WP_000729440.1 | incFII family plasmid replication initiator RepA | - |
| N1709_RS24345 (N1709_24345) | 68012..68653 | + | 642 | WP_000335846.1 | transcription termination/antitermination NusG family protein | - |
| N1709_RS24350 (N1709_24350) | 68794..69459 | + | 666 | WP_000154143.1 | hypothetical protein | - |
| N1709_RS24355 (N1709_24355) | 69726..70346 | + | 621 | WP_000176497.1 | DUF1449 family protein | - |
| N1709_RS24360 (N1709_24360) | 70373..72067 | + | 1695 | WP_000482663.1 | flotillin family protein | - |
| N1709_RS24365 (N1709_24365) | 72148..72390 | + | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| N1709_RS24370 (N1709_24370) | 72507..72842 | + | 336 | WP_024174020.1 | hypothetical protein | - |
| N1709_RS24375 (N1709_24375) | 72999..74069 | + | 1071 | WP_001170192.1 | hypothetical protein | VF |
| N1709_RS24380 (N1709_24380) | 74074..74511 | + | 438 | WP_000539685.1 | type IV pilus biogenesis protein PilM | - |
| N1709_RS24385 (N1709_24385) | 74542..76161 | + | 1620 | WP_001034998.1 | Outer membrane lipoprotein BfpB | VF |
| N1709_RS24390 (N1709_24390) | 76182..77477 | + | 1296 | WP_000129889.1 | type 4b pilus protein PilO2 | - |
| N1709_RS24395 (N1709_24395) | 77467..77919 | + | 453 | WP_001112926.1 | type IV pilus biogenesis protein PilP | - |
| N1709_RS24400 (N1709_24400) | 78004..79512 | + | 1509 | WP_000886638.1 | hypothetical protein | VF |
| N1709_RS24405 (N1709_24405) | 79514..80614 | + | 1101 | WP_000670135.1 | hypothetical protein | VF |
| N1709_RS24410 (N1709_24410) | 80688..81224 | + | 537 | WP_001011156.1 | type 4 pilus major pilin | - |
| N1709_RS24415 (N1709_24415) | 81278..81751 | + | 474 | WP_000870986.1 | hypothetical protein | VF |
| N1709_RS24420 (N1709_24420) | 81770..82405 | + | 636 | WP_000478596.1 | prepilin peptidase | - |
| N1709_RS24425 (N1709_24425) | 82410..83774 | + | 1365 | WP_001168072.1 | hypothetical protein | VF |
| N1709_RS24430 (N1709_24430) | 84389..85558 | + | 1170 | WP_000486835.1 | site-specific integrase | - |
| N1709_RS24435 (N1709_24435) | 85600..85890 | + | 291 | WP_000681898.1 | hypothetical protein | - |
| N1709_RS24440 (N1709_24440) | 85982..86302 | - | 321 | WP_000695052.1 | hypothetical protein | - |
| N1709_RS24445 (N1709_24445) | 86445..88058 | - | 1614 | WP_044186286.1 | IS66 family transposase IS682 | Transposase |
| N1709_RS24450 (N1709_24450) | 88089..88439 | - | 351 | WP_000624701.1 | IS66 family transposase IS682 | Transposase |
| N1709_RS24455 (N1709_24455) | 88436..88861 | - | 426 | WP_000435660.1 | IS66 family transposase IS682 | Transposase |
| N1709_RS24460 (N1709_24460) | 89103..89924 | + | 822 | WP_000804090.1 | hypothetical protein | - |
| N1709_RS24465 (N1709_24465) | 90014..91216 | + | 1203 | WP_000980151.1 | conjugal transfer protein TraF | - |
| N1709_RS24470 (N1709_24470) | 91356..91526 | + | 171 | WP_000482367.1 | hypothetical protein | - |
| N1709_RS24475 (N1709_24475) | 91575..92027 | + | 453 | WP_001081198.1 | DotD/TraH family lipoprotein | - |
| N1709_RS24480 (N1709_24480) | 92024..92860 | + | 837 | WP_000848138.1 | hypothetical protein | VF |
| N1709_RS24485 (N1709_24485) | 92844..93992 | + | 1149 | WP_000625246.1 | putative protein YggR | VF |
| N1709_RS24490 (N1709_24490) | 93989..94279 | + | 291 | WP_000817799.1 | hypothetical protein | - |
| N1709_RS24495 (N1709_24495) | 94343..98359 | + | 4017 | WP_021554958.1 | DUF5710 domain-containing protein | - |
| N1709_RS24500 (N1709_24500) | 98376..98726 | + | 351 | WP_001056365.1 | hypothetical protein | - |
| N1709_RS24505 (N1709_24505) | 98738..99433 | + | 696 | WP_001287261.1 | DotI/IcmL family type IV secretion protein | - |
| N1709_RS24510 (N1709_24510) | 99444..100418 | + | 975 | WP_001165565.1 | hypothetical protein | VF |
| N1709_RS24515 (N1709_24515) | 100422..101753 | + | 1332 | WP_009453278.1 | conjugal transfer protein TraO | - |
| N1709_RS24520 (N1709_24520) | 101750..102463 | + | 714 | WP_000787006.1 | conjugal transfer protein TraP | - |
| N1709_RS24525 (N1709_24525) | 102460..102990 | + | 531 | WP_000987022.1 | conjugal transfer protein TraQ | - |
| N1709_RS24530 (N1709_24530) | 103037..103435 | + | 399 | WP_000086067.1 | hypothetical protein | - |
| N1709_RS24535 (N1709_24535) | 103492..103644 | + | 153 | Protein_115 | TraS | - |
| N1709_RS24540 (N1709_24540) | 103658..104476 | + | 819 | WP_072148514.1 | conjugal transfer protein TraT | - |
| N1709_RS24545 (N1709_24545) | 104535..104894 | + | 360 | WP_000379509.1 | hypothetical protein | - |
| N1709_RS24550 (N1709_24550) | 104891..105274 | + | 384 | WP_001369266.1 | hypothetical protein | - |
| N1709_RS24555 (N1709_24555) | 105247..105792 | - | 546 | WP_001369268.1 | hypothetical protein | - |
| N1709_RS24560 (N1709_24560) | 106017..109061 | + | 3045 | WP_001024760.1 | hypothetical protein | - |
| N1709_RS24565 (N1709_24565) | 109061..109678 | + | 618 | WP_000286861.1 | hypothetical protein | - |
| N1709_RS24570 (N1709_24570) | 109639..110844 | + | 1206 | WP_001189539.1 | conjugal transfer protein TraW | - |
| N1709_RS24575 (N1709_24575) | 110841..111410 | + | 570 | WP_000650755.1 | conjugal transfer protein TraX | - |
| N1709_RS24580 (N1709_24580) | 111483..113648 | + | 2166 | WP_000691804.1 | DotA/TraY family protein | - |
| N1709_RS24585 (N1709_24585) | 113719..114372 | + | 654 | WP_001098361.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| N1709_RS24590 (N1709_24590) | 114646..116232 | + | 1587 | WP_000004565.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| N1709_RS24595 (N1709_24595) | 116370..116522 | - | 153 | WP_001597021.1 | Hok/Gef family protein | - |
| N1709_RS24600 (N1709_24600) | 116855..117097 | + | 243 | WP_000064387.1 | hypothetical protein | - |
| N1709_RS24605 (N1709_24605) | 117190..118725 | - | 1536 | WP_001317519.1 | phosphoethanolamine transferase | - |
| N1709_RS24610 (N1709_24610) | 118925..119380 | - | 456 | WP_001205146.1 | DUF2569 family protein | - |
| N1709_RS24615 (N1709_24615) | 119468..120091 | - | 624 | WP_001158020.1 | hypothetical protein | - |
| N1709_RS24620 (N1709_24620) | 120250..120753 | + | 504 | WP_000598957.1 | thermonuclease family protein | - |
| N1709_RS24625 (N1709_24625) | 121118..125209 | + | 4092 | WP_072004513.1 | Serine protease SepA autotransporter | VF |
| N1709_RS24630 (N1709_24630) | 125372..125533 | - | 162 | WP_001317521.1 | hypothetical protein | - |
| N1709_RS24635 (N1709_24635) | 125715..126077 | + | 363 | WP_000997721.1 | hypothetical protein | - |
| N1709_RS24640 (N1709_24640) | 126090..126281 | + | 192 | WP_000264906.1 | hypothetical protein | - |
| N1709_RS24645 (N1709_24645) | 126309..126620 | + | 312 | WP_000203479.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|