MGE detailed information
MGE type: Prophage MGE length: 69294 bp
Accession: NZ_CP104117 Location: 2399423..2468716 Organism: Escherichia coli strain USDA-ARS-USMARC-50748 Replicon: chromosome
Accession: NZ_CP104117 Location: 2399423..2468716 Organism: Escherichia coli strain USDA-ARS-USMARC-50748 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1709_RS11810 (2395321) | 2395321..2396541 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| N1709_RS11815 (2396666) | 2396666..2397361 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| N1709_RS11820 (2397314) | 2397314..2398606 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N1709_RS11825 (2398766) | 2398766..2399380 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N1709_RS11830 (2399423) | 2399423..2400277 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N1709_RS11835 (2400279) | 2400279..2400896 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N1709_RS11840 (2400907) | 2400907..2403330 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N1709_RS11845 (2403391) | 2403391..2405817 | - | 2427 | WP_000041535.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N1709_RS11850 (2406016) | 2406016..2406321 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| N1709_RS11855 (2406429) | 2406429..2407139 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N1709_RS11860 (2407142) | 2407142..2407702 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| N1709_RS11865 (2407737) | 2407737..2408078 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| N1709_RS11870 (2408213) | 2408213..2408539 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| N1709_RS11875 (2408745) | 2408745..2409959 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N1709_RS11880 (2409971) | 2409971..2410990 | + | 1020 | WP_000836064.1 | Zn-dependent oxidoreductase | - |
| N1709_RS11885 (2411178) | 2411178..2412458 | - | 1281 | WP_260252640.1 | Putative defective protein IntQ ; Integrase | Integrase |
| N1709_RS11890 (2412493) | 2412493..2412744 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| N1709_RS11895 (2412817) | 2412817..2415288 | - | 2472 | WP_260252644.1 | exonuclease | - |
| N1709_RS11900 (2415381) | 2415381..2415572 | - | 192 | WP_260252645.1 | lysis protein YdfD | - |
| N1709_RS11905 (2415569) | 2415569..2415757 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N1709_RS11910 (2416325) | 2416325..2416543 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N1709_RS11915 (2416573) | 2416573..2416701 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N1709_RS11920 (2416703) | 2416703..2416858 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N1709_RS11925 (2417025) | 2417025..2417432 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N1709_RS11930 (2417516) | 2417516..2417746 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N1709_RS11935 (2417730) | 2417730..2418251 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| N1709_RS11940 (2418232) | 2418232..2419197 | + | 966 | WP_260252647.1 | hypothetical protein | - |
| N1709_RS11945 (2419238) | 2419238..2419660 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| N1709_RS11950 (2419657) | 2419657..2420146 | + | 490 | Protein_2338 | class I SAM-dependent methyltransferase | - |
| N1709_RS11955 (2420624) | 2420624..2420749 | + | 126 | WP_260252986.1 | hypothetical protein | - |
| N1709_RS11965 (2422002) | 2422002..2422306 | + | 305 | Protein_2341 | hypothetical protein | - |
| N1709_RS11970 (2422962) | 2422962..2424032 | + | 1071 | Protein_2342 | ISNCY family transposase ISCARN112 | Transposase |
| N1709_RS11975 (2424105) | 2424105..2424254 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| N1709_RS11980 (2424691) | 2424691..2425023 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N1709_RS11985 (2425226) | 2425226..2425531 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N1709_RS11990 (2425556) | 2425556..2425795 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N1709_RS11995 (2425795) | 2425795..2426082 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N1709_RS12000 (2426154) | 2426154..2426309 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N1709_RS12005 (2426526) | 2426526..2426777 | + | 252 | WP_000980994.1 | protein Rem | - |
| N1709_RS12010 (2426844) | 2426844..2427122 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N1709_RS12015 (2427124) | 2427124..2428173 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N1709_RS12020 (2428187) | 2428187..2428939 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N1709_RS12025 (2429217) | 2429217..2429306 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N1709_RS12030 (2429361) | 2429361..2429573 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N1709_RS12035 (2429874) | 2429874..2430089 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N1709_RS12040 (2430453) | 2430453..2430623 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N1709_RS12045 (2430843) | 2430843..2431058 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N1709_RS12050 (2431063) | 2431063..2431374 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| N1709_RS12055 (2431371) | 2431371..2431904 | + | 534 | WP_001092971.1 | lysozyme | - |
| N1709_RS12060 (2431901) | 2431901..2432398 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N1709_RS12065 (2432761) | 2432761..2432973 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N1709_RS12070 (2432984) | 2432984..2433172 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| N1709_RS12075 (2433175) | 2433175..2433240 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| N1709_RS12080 (2433320) | 2433320..2433475 | + | 156 | WP_001309517.1 | protein YnfN | - |
| N1709_RS12085 (2433647) | 2433647..2433820 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N1709_RS12090 (2433972) | 2433972..2434382 | - | 411 | WP_260252648.1 | DUF1398 domain-containing protein | - |
| N1709_RS12095 (2434440) | 2434440..2434673 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N1709_RS12100 (2435062) | 2435062..2435607 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| N1709_RS12105 (2435582) | 2435582..2437507 | + | 1926 | WP_001027293.1 | phage terminase large subunit family protein | - |
| N1709_RS12110 (2437504) | 2437504..2437710 | + | 207 | WP_000198149.1 | gpW family protein | - |
| N1709_RS12115 (2437707) | 2437707..2439308 | + | 1602 | WP_260252649.1 | phage portal protein | - |
| N1709_RS12120 (2439289) | 2439289..2440608 | + | 1320 | WP_000123311.1 | S49 family peptidase | - |
| N1709_RS12125 (2440618) | 2440618..2440950 | + | 333 | WP_012304872.1 | head decoration protein | - |
| N1709_RS12130 (2441006) | 2441006..2442031 | + | 1026 | WP_024232991.1 | major capsid protein | - |
| N1709_RS12135 (2442073) | 2442073..2442468 | + | 396 | WP_032318908.1 | DNA-packaging protein FI | - |
| N1709_RS12140 (2442480) | 2442480..2442833 | + | 354 | WP_000753001.1 | head-tail joining protein | - |
| N1709_RS12145 (2442845) | 2442845..2443423 | + | 579 | WP_001541219.1 | phage tail protein | - |
| N1709_RS12150 (2443420) | 2443420..2443815 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| N1709_RS12155 (2443823) | 2443823..2444563 | + | 741 | WP_024232989.1 | phage tail protein | - |
| N1709_RS12160 (2444579) | 2444579..2445001 | + | 423 | WP_000479146.1 | phage minor tail protein G | - |
| N1709_RS12165 (2444983) | 2444983..2445417 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| N1709_RS12170 (2445410) | 2445410..2447971 | + | 2562 | WP_054626332.1 | phage tail tape measure protein | - |
| N1709_RS12175 (2447968) | 2447968..2448297 | + | 330 | WP_000847345.1 | phage tail protein | - |
| N1709_RS12180 (2448297) | 2448297..2448995 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| N1709_RS12185 (2449000) | 2449000..2449743 | + | 744 | WP_227443613.1 | C40 family peptidase | - |
| N1709_RS12190 (2449740) | 2449740..2450312 | + | 573 | WP_000847668.1 | tail assembly protein | - |
| N1709_RS12195 (2450373) | 2450373..2453852 | + | 3480 | WP_213852968.1 | host specificity protein J | - |
| N1709_RS12200 (2453920) | 2453920..2454519 | + | 600 | WP_001233110.1 | Outer membrane protein X | VF |
| N1709_RS12205 (2454584) | 2454584..2457934 | + | 3351 | WP_072279701.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N1709_RS12210 (2457934) | 2457934..2458509 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| N1709_RS12215 (2458607) | 2458607..2459197 | - | 591 | WP_000086525.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N1709_RS12220 (2459514) | 2459514..2459747 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N1709_RS12225 (2459816) | 2459816..2459929 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N1709_RS12230 (2460533) | 2460533..2461816 | + | 1284 | Protein_2394 | MHS family MFS transporter YdfJ | - |
| N1709_RS12235 (2461905) | 2461905..2463365 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| N1709_RS12240 (2463401) | 2463401..2463604 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N1709_RS12245 (2463782) | 2463782..2464468 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N1709_RS12250 (2464557) | 2464557..2465303 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| N1709_RS12255 (2465440) | 2465440..2467485 | + | 2046 | WP_001315525.1 | peptidyl-dipeptidase Dcp | - |
| N1709_RS12260 (2467530) | 2467530..2468048 | - | 519 | WP_001024810.1 | 2-oxo-tetronate isomerase | - |
| N1709_RS12265 (2468324) | 2468324..2468716 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| N1709_RS12270 (2468971) | 2468971..2469861 | + | 891 | WP_000592826.1 | diguanylate cyclase DgcZ | - |
| N1709_RS12275 (2469976) | 2469976..2470080 | - | 105 | WP_211180496.1 | protein MgtT | - |
| N1709_RS12280 (2470080) | 2470080..2470175 | - | 96 | WP_000901367.1 | protein MgtS | - |
| N1709_RS12285 (2470302) | 2470302..2471489 | - | 1188 | Protein_2405 | efflux MFS transporter YdeE | - |
| N1709_RS12290 (2471684) | 2471684..2472583 | + | 900 | WP_000087192.1 | O-acetylserine/cysteine exporter | - |
| N1709_RS12295 (2472628) | 2472628..2473326 | - | 699 | WP_000577184.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|